#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 17, 2026; 14:51 GMT

TreeBASE (cc) 1994-2008

Study reference:
Mehl J.W., Slippers B., Roux J., & Wingfield M.J. 2017. Overlap of latent pathogens
in the Botryosphaeriaceae on a native and agricultural host. Fungal Biology,
121(4): 405-419.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19055]

[ The following blocks are input data for analysis step 20428 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep20428;
        DIMENSIONS NTAX=16;
        TAXLABELS
            Melanops_indica_CMW25198b
            Melanops_indica_CMW25214b
            Melanops_indica_CMW28377b
            Melanops_indica_CMW28412b
            Melanops_indica_MAN210236b
            Melanops_indica_MAN210316b
            Melanops_indica_MAN27316b
            Neofusicoccum_kwambonambiense_CMW14023_Syz_cordatum
            Neofusicoccum_kwambonambiense_CMW14123_Syz_cordatum
            Neofusicoccum_parvum_CBS110301_V_vinifera
            Neofusicoccum_parvum_CMW9081_Populus_nigra
            Neofusicoccum_umdonicola_CMW14058_Syz_cordatum
            Neofusicoccum_umdonicola_CMW14106_Syz_cordatum
            Sclerocarya_birrea_MAR11328
            Sclerocarya_birrea_MAR21022
            Sclerocarya_birrea_MAR2134
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M35839]

	TITLE 'Parvum-ribis BT dataset';
	LINK TAXA = TaxaForAnalysisStep20428;
	DIMENSIONS NCHAR=420;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420]
[                                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Melanops_indica_CMW25198b                               TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Melanops_indica_CMW25214b                               TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Melanops_indica_CMW28377b                               TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Melanops_indica_CMW28412b                               TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Melanops_indica_MAN210236b                              TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCACGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
Melanops_indica_MAN210316b                              TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGGAACAACTG
Melanops_indica_MAN27316b                               TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Neofusicoccum_kwambonambiense_CMW14023_Syz_cordatum     TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Neofusicoccum_kwambonambiense_CMW14123_Syz_cordatum     TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Neofusicoccum_parvum_CBS110301_V_vinifera               TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
Neofusicoccum_parvum_CMW9081_Populus_nigra              TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
Neofusicoccum_umdonicola_CMW14058_Syz_cordatum          TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCACGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
Neofusicoccum_umdonicola_CMW14106_Syz_cordatum          TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCACGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
Sclerocarya_birrea_MAR11328                             ????????????????????????????????????????????????????????????????????GGCAGCACCATTTCTGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTAGGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
Sclerocarya_birrea_MAR21022                             TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
Sclerocarya_birrea_MAR2134                              TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
;
END;

[ The following blocks are output data for analysis step 20428 ]
BEGIN TREES;
      TITLE 'Parvum-ribis complex BT ML tree';
      LINK TAXA = TaxaForAnalysisStep20428;
      TREE 'Parvum-ribis complex BT ML tree' = [&R] ((((Sclerocarya_birrea_MAR11328:0.0177019328,Neofusicoccum_parvum_CMW9081_Populus_nigra:1.0E-10):2.38E-7,Neofusicoccum_parvum_CBS110301_V_vinifera:1.0E-10)0.828:0.0043013307,((((((Melanops_indica_MAN210316b:0.0024032709,Neofusicoccum_kwambonambiense_CMW14023_Syz_cordatum:1.0E-10):2.711E-7,Neofusicoccum_kwambonambiense_CMW14123_Syz_cordatum:1.0E-10):2.569E-7,Melanops_indica_CMW25198b:1.0E-10):1.927E-7,Melanops_indica_CMW28412b:1.0E-10):1.927E-7,Melanops_indica_MAN27316b:1.0E-10)0.934:0.0094101678,(Sclerocarya_birrea_MAR2134:1.0E-10,(Sclerocarya_birrea_MAR21022:1.0E-10,(Melanops_indica_CMW28377b:1.0E-10,Melanops_indica_CMW25214b:1.0E-10):1.0E-10):1.0E-10)0.757:0.0029012274):0.0049163775):0.0014553341,(Melanops_indica_MAN210236b:1.0E-10,(Neofusicoccum_umdonicola_CMW14106_Syz_cordatum:1.0E-10,Neofusicoccum_umdonicola_CMW14058_Syz_cordatum:1.0E-10):1.0E-10)0.781:0.0014553341);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr94997]


END;