#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 08, 2026; 3:13 GMT

TreeBASE (cc) 1994-2008

Study reference:
Riggs J.W., Cavales P.C., Chapiro S.M., & Callis J. 2017. Identification and biochemical
characterization of the fructokinase gene family in Arabidopsis thaliana.
BMC Plant Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S20814]

[ The following blocks are input data for analysis step 20452 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep20452;
        DIMENSIONS NTAX=22;
        TAXLABELS
            Arabidopsis_thaliana_AT1G06020
            Arabidopsis_thaliana_AT1G06030
            Arabidopsis_thaliana_AT1G06730
            Arabidopsis_thaliana_AT1G17160
            Arabidopsis_thaliana_AT1G19600
            Arabidopsis_thaliana_AT1G22940
            Arabidopsis_thaliana_AT1G49350
            Arabidopsis_thaliana_AT1G66430
            Arabidopsis_thaliana_AT1G69200
            Arabidopsis_thaliana_AT2G31390
            Arabidopsis_thaliana_AT3G09820
            Arabidopsis_thaliana_AT3G54090
            Arabidopsis_thaliana_AT3G59480
            Arabidopsis_thaliana_AT4G10260
            Arabidopsis_thaliana_AT4G27600
            Arabidopsis_thaliana_AT4G28706
            Arabidopsis_thaliana_AT5G03300
            Arabidopsis_thaliana_AT5G19150
            Arabidopsis_thaliana_AT5G37850
            Arabidopsis_thaliana_AT5G43910
            Arabidopsis_thaliana_AT5G51830
            Arabidopsis_thaliana_AT5G58730
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41020]

	TITLE Arabidopsis_PFKB_matrix;
	LINK TAXA = TaxaForAnalysisStep20452;
	DIMENSIONS NCHAR=333;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=X GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330   ]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .   ]
Arabidopsis_thaliana_AT1G06020     STGEKGLIVSFGEMLIDFVPTVSGVSLS----ESPGFLKAPGGAPANVAIAVSRLGGRAAFVGKLGDDDFGHMLAGILRKNGVDDQGINFDEGARTALAFVTLR-SDGEREFMFYRNPSADMLLRP---DELNLELIRSAKVFHYGSISLITEPCRSAHMKAMEVAKEAGALLSYDPNLREPLWPSPEEARTQIMSIWDKADIIKVSDVELEFLTENKTMDDKTAMLWHPNLKLLLVTLGEKGCTYFTKKFHGSVETFHVD-A-----VDTTGAGDSFVGALLQQIVDDQSVLEDEARLRKVLRFANACGAITTTKKGAIPALPTDIEALSFL
Arabidopsis_thaliana_AT1G06030     NGDNKGLVVSFGEMLIDFVPTESGVSLS----ESSGFLKAPGGAPANVAIAVSRLGGRAAFVGKLGDDEFGHMLAGILRKNDVDDQGINFDKGARTALAFVTLR-SDGEREFMFYRNPSADMLLRP---DELNLELIRSAKVFHYGSISLITEPCRSAHMKAMEVAKEAGALLSYDPNLREPLWPSPEEARKQIMSIWDKADIIKVSDVELEFLTGNKTIDDETAMLWHPNLKLLLVTLGENGCRYYTKDFHGSVETFHVD-A-----VDTTGAGDSFVGALLNQIVDDQSVLEEEERLRKVLRFANACGAITTTKKGAIPALPTDCEALSFL
Arabidopsis_thaliana_AT1G06730     VVEKPIDVSTLGNLCVDIVLSVHELPPPELSMSPPDKKYWEAGGNCNMAIAAARLGLHCVAIGHVGDEIYGEFLLDVLHEEGIGTVALNGGTNEKDTSSFICWVVDPLQRHGFCSRADEEPAFSWITDLSDEVKMAIRQSKVLFCNGYDFD-DFSPSFIMSTIDYAAKVGTAIFFDPGPRKSLSKGTPDERRALAHFLRMSDVLLLTSEEVEALTGIRPVKAGQEIRNGKGTKWVIVKMGPKGSILVTKSSVSVAPAFKVE-V-----VDTVGCGDSFVAAIALGYIRNMP-------LVNTLTIANAVGAATAMGCGAGRNVAKRHQVVDLM
Arabidopsis_thaliana_AT1G17160     -----------GSANADIYVEIERLPKEGETISAKTGQTLAGGKGANQAACGAKLMYPTYFVGRLGEDAHGKLIAEALGDDGVHLDYVRSVNNEPTGHAVVMLQ-SDGQNSIIIVGGA--NMKAWPEIMSDDDLEIVRNAGI-----VLLQREIPDSINIQVAKAVKKAG----------VPVILDVGGMDTPINELLDSIDILSPNETELSRLTGMPETFEQISQCHKLGVKQVLVKLGSKGSALFIQ---GEKPIQQSI-IPAAQVVDTTGAGDTFTAAFAVAMVEGKS-------HEECLRFAAAAASLCVQVKGAIPSMPDRKSVLKLL
Arabidopsis_thaliana_AT1G19600     KCPEAPLVLGLAALIDNVAPVDWSLSIADAHISVAPLKKMAGGSVTNVRGLSVGFGVATGIIGAYGDDEQGQLFVSNMGFSGVSISRLRKKKGSTAQCVC-LVD-DSGNRTMRPCLSS--AVKIQA---DELSKEDFTGSKVLRYAVLNLQ------VIQAAIRFAKQEGLSVSLDLAS-FEMVRNSKSELRQLES--GNIDLCFANEDEAAELLRGEEAGPEAALFLGRHCRWAVVTLGSKGCIAKHDKEVVHISAIGET-V----ATDATGAGDLFASGFLYGLIKGLS-------LEECCKVGSCSGGSVIRALGGE-VTPENHKQLQLK
Arabidopsis_thaliana_AT1G22940     AGIQADLKVCAGVYCASVITAVTAQVQSKSVLSDFEFDVVKTGMLPSVEVLLQNLSDFPVMVSTSGHVLAGSSILSIFRERLLPIADIITPNVKEASALLDGFRETVAEMRSAAKSLHGPRFVLVK---GGDLPDSSDSVDVYFDGKEFHELRSPRIATRNTHGTGCTLASCIAAELAKGSSMLSAVKVAKRFVDNALDYSKIGSGMQGPFDHFFGLKSIFNPDDLKWNRSIVDALKAAIEGGATIITREFHGVSLLINDR-IDIALACDADGVGQSLLGPDKIIGVSCKTPEQAHQAWKDGADYIGSGGVFPTNTKANLDGLKEVCEASKLP
Arabidopsis_thaliana_AT1G49350     ---MEPVI--IGALILDVHAKPSTTPIS-GTTVPGQVLFAPGGVARNVADCIFKLGITPFMIGTLGLDGPANVL---LKEWKLSMKGILRREDISTPIVS-LVD-TNGEVAAGVAGVDAVENFLTP--------EWIQRFEISSARLLMVDANLSSLALEASCKLAAESS----------VPVWFEPSVTKSQRASIAKYVTIVSPNQDELIAMANALFRSDENKLLLKNGVKVVIVTLGSNGALLCSKGNSGEFKAMHFP-TIPAKVKKLTGAGDCLVGGTVASLSDGLD-------LIQSLAVGIASAKAAVESDDNVPPEFKLDLI----
Arabidopsis_thaliana_AT1G66430     STQESPYVVCFGEMLIDFVPTTSGLSLA----DAPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGEDEFGYMLANILKDNNVNNDGMRFDPGARTALAFVTLT-NEGEREFMFYRNPSADMLLEE---SELDFDLIKKAKIFHYGSISLITEPCKSAHISAAKAAKEAGVILSYDPNLRLPLWPSADNAREEILSIWETADIIKISEEEIVFLTKGEDPYDDNVVLFHPKLKLLLVTEGPEGCRYYTKDFSGRVHGLKVD-V-----VDTTGAGDAFVAGILSQLANDLSLLQDEERLREALMFANACGALTVKVRGAIPALPTKEAVHEAL
Arabidopsis_thaliana_AT1G69200     TYGWPPLVCCFGSAQHAFVPSGRPANRLDAKWAPEKYIRAPGGCAGGVAIALASLGGKVAFMGKLGADDYGQAMLYYLNVCKVQTRSVKIDGKRVTACSTMKIS-KRGRLKSTCIKPCAEDSLS-K---SEINVDVLKEAKMFYFSTHSLLDKKMMSTTIQAIKISKQLGNVIFYDLNLPLPLWHSSEETKSFIQEVWNLADVIEITKQELEFLCGIEEEFDTENNLWHENLKVLFVTNGTSKIHYYTKEHNGAVSGMEDV-PITPFTRDMSASGDGIVAGLIRMLTVQPDLMNNKGYLERTARYAIECGIIDQWLLAQTRGYPPKDDMEEEE
Arabidopsis_thaliana_AT2G31390     SNGDKGLIVSFGEMLIDFVPTESGVSLA----EAPGFLKAPGGAPANVAIAVSRLGGRSAFVGKLGDDEFGHMLAGILRKNGVDDQGINFDTGARTALAFVTLR-ADGDREFMFYRNPSADMLLRP---DELNLDLIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGALLSYDPNLREPLWPSKEEAKTQIMSIWDKAEIIKVSDVELEFLTGSNKIDDETALLWHPNLKLLLVTLGEKGCRYYTKTFKGAVDPFHVN-A-----VDTTGAGDSFVGALLNQIVDDRSVLEDEERLRKVLRFANACGAITTTKKGAIPALPSDAEVRSFL
Arabidopsis_thaliana_AT3G09820     SSDFDGILLGMGNPLLDVSAVVDQQNAIDEMSQKFNVEYIAGGATQNVAQWMLQVPGATSYMGSIGKDKYGEAMKKDATAAGVYVHYYEDEATPTGTCGVCVLG---GE-RSLIANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIQLVREHAAANNK----VFTMNLSAPFIC---EFFKDVEKCLPYMDYIFGNETEARTFSRVHETDDVEQIASGTYKRTTVITQGADPVVVAED---GKVKKYPVIPLPKEKLVDTNGAGDAFVGGFLSQLVHGKG-------IEECVRAGCYASNVVIQRSGCT--YPEKPDFN---
Arabidopsis_thaliana_AT3G54090     PYDDPPLVCCFGAVQKEFVPVVRVHDNPMLQWDPPEFGRAPGGPPSNVAISHVRLGGRAAFMGKVGEDDFGDELVLMMNQERVQTRAVKFDENSKTACTRVKIK-KDGKMMAETVKEPPEDSLF-A---SELNLAVLKEARIFHFNSEVLTSPTMQSTLFTAIQWSKKFGGLIFFDLNLPLPLWRSRNETRKLIKKAWNEANIIEVSQQELEFLLDEDEDFDQTKNLWHDKLKLLVVTDGTLRLHYYTPTFDGVVIGTEDV-LITPFTCDRTGSGDAVVAGIMRKLTTCPEMFEDQDVMERQLRFAVAAGIIAQWTIGAVRGFPTESATQNLK
Arabidopsis_thaliana_AT3G59480     SNGEKSLIVSFGEMLIDFVPTVSGVSLA----DAPGFIKAPGGAPANVAIAISRLGGRAAFVGKLGDDEFGHMLAGILKQNGVSAEGINFDTGARTALAFVTLR-SDGEREFMFYRNPSADMLLRP---DELNLDVIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGALLSYDPNLRLPLWPSKEEAQKQILSIWDKAEVIKVSDEELMFLTGSDKVDDETALLWHSNLKLLLVTLGEKGCRYYTKSFRGSVDPFHVD-A-----VDTTGAGDSFVGALLCKIVDDRAVLEDEARLREVLRLANACGAITTTKKGAIPALPTESEVQSLL
Arabidopsis_thaliana_AT4G10260     -MANTPLIVSFGEMLIDFVPDTSGVSLA----ESTGFLKAPGGAPANVACAITKLGGKSAFIGKFGDDEFGHMLVNILKKNGVNSEGVCFDTNARTALAFVTLK-KDGEREFMFYRNPSADMLLKE---SELNKDLIKKAKIFHYGSISLISEPCRTAHMAAMKTAKDAGVLLSYDPNVRLPLWPSTEAAIEGIKSIWNEADIIKVSDDEVTFLTRGDAEKDDVVLLMHDKLKLLIVTDGEKGCRYYTKKFKGRVPGYAVK-A-----VDTTGAGDSFVGAFLVSLGKDGSILDDEGKLKEALAFANACGAVCTTQKGAIPALPTPADAQKLM
Arabidopsis_thaliana_AT4G27600     ASPERWDVLGLGQAMVDFSGVVDDETRKLQAMDGCSYKAAAGGSLSNTLVALARLGSQSAMAGSIGGDPLGSFYGTKLRRANVNFLSAPIKDGTTGTVI--VLT-PDAQRTMLAYQGT--SSVVNY---DSCLASLIAKTNVFVVEGYLFELPDTIRTITKACEEAHRNGALVAVTA----SDVSCIERHYDDFDIVGNYADIVFANSDEARAFCHFSEESPISATYMSHFVPFVSVTDGINGSYIGVKGEAIYIPPSPCV-P-----VDTCGAGDAYASGILYGILRGVS------DLKGMGDMAATIAATVVGQQGTRLRVQDAVELA---
Arabidopsis_thaliana_AT4G28706     PPPDNAIVLGCGGIAVDFLATVDSYPQADDKIRSTSLKVQGGGNAANALTCAARLGLNSRLISKVANDSQGKGMLEELEADGVDTSFIVVSKEGNSPFTYILV--DNQTKTRTCIHTPGDPPMLPTDLSQSSMLSALDRASIVYFDVRLHE---------TALVIAKEAS-------RKKIPILVDTEKKRDGLDDLLPFADYVVCPENFPQTWTEVSTPGALVSMLRLPKLKFVIVTSGEHGCLMVVGTMTGRFLGTAEK-IPPEELVDTTGAGDAFIGAVLYAICAGMP-------PEKMLPFAAQVAGCSCRALGARTGLPHRPRLVPFL
Arabidopsis_thaliana_AT5G03300     SSNYDGILLGMGNPLLDISAVVDDENAIDEMSSKFNVEYIAGGATQNVAQWMLQIPGATSYMGSIGKDKYGEAMKKDATAAGVNVHYYEDESAPTGTCGVCVVG---GE-RSLIANLSAANCYKVDHLKKPENWALVEKAKFYYIAGFFLTVSPESIQLVSEHAAANNK----VFTMNLSAPFIC---EFFKDVEKFLPYMDFVFGNETEARTFSRVHETEDVEQIATGTYKRTTVITQGADPVVVAED---GKVKKYPVIPLPKEKLVDTNGAGDAFVGGFMSQLVKEKS-------IEECVKAGCYASNVVIQRSGCT--YPEKPDFN---
Arabidopsis_thaliana_AT5G19150     ------------------TSEADAESVLRTVTPSLDLKRHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVF----------CTKDAAPVIKSYPELIHPVLEESYSISQLSEEDKREVQDKVLGEVGKWMERFDCLVIGPGLGRDPFLLECVSIIMLLAKKSN----------VPFVI--DGDGLFLTNSIDLVHVLTPNVNEYKRLVQKVEVDEQNAELAKQIGGVTILRKGKSDLIS-----NGEVKSVSIYGS-----PRRCGGGDILSGGVAVFLSWAQQLKSDPESPSENPAILGCIAASGLLRKAASLAFTKHSDIIECL
Arabidopsis_thaliana_AT5G37850     TPPVLSLALPSGRVLSIQSHTVQGYVGN----KSAVFPLQLLGYDVD-PINSVQFSNHTGYPTFKGQVLNGQQLCDLI--EGLEANDLLFYTHVLTGYI--------GSVSF-----------------LDTILEVINKLR-----------SVNPNLTYVCDPVMGDEGKL------------YVPEELVHVYEKVVPLASMLTPNQFEAEKLTGLRSEEDGREALHAAGPSKVVITSITIGGILLHQKEKGLPEQFKIL--IHKIPAYFTGTGD-LMTALLLGWSNKYP-----DNLDKAAELAVSTLQALLRRTLDRAGYDPTSSSLEIR
Arabidopsis_thaliana_AT5G43910     AIPGQPIVLGCGQLCLDYLVTVASFPIPDQKIRGTSFKVQGGGNTGNALTCVARLGLPCRILAKVADDSHGRYMVEELESSGVDTSFCMSAKDGASHFNYVIV--DNQTNTRTCIYTPGYPPLLPDDLTESLLLDVLDGVRVLYVNGRSRE---------AELLLAQK-A-------HSKIPILINAEKKRTGLDELIDLADYAICSTNFPQEWTGAPSPSALLSMIRLPKLKFVIMTLGEHGCVMLTGNVTGRVIVTAEK-IPSSELIDTTGAGDAFTGALLYGLCTGMA-------LEEMLTFASRVAACCCRGLGARTSLPYRPNLATFL
Arabidopsis_thaliana_AT5G51830     TRDSETLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGVSRLGGSSAFIGKVGDDEFGRMLADILRLNNVDNSGMRFDHNARTALAFVTLR-GDGEREFLFFRHPSADMLLLE---SELDKNLIQKAKIFHYGSISLIEEPCRSTQLVAMKIAKAAGSLLSYDPNLRLPLWPSEEAARKEIMSIWNLADVIKISEDEITFLTGGDDPYDDDVVLFHPNLKLLVVSEGPNGCRYYTQEFKGRVGGVKVK-P-----VDTTGAGDAFVSGLLNSLASDLTLLKDEKKLREALLFANACGAITVTERGAIPAMPSMDAVQDLL
Arabidopsis_thaliana_AT5G58730     IPNRRVLI--VGNYCHDVLIQNGSV-----------VAETLGGAASFISNVLDSSSVSCDLVSKVGHD---------FRYEVTHSPIVAPEKETTVFEAYFDLGDGIGHADRVLKRVSACDPILPS----DIPDSRFDFGMAVGVGGEILPETLEKMVEICDVVAVDIQALIRVFDPVDGAVKLVDLKE--SGFYHILHRIGFLKASSDEALFMDVEQ----------MKHLCCVVVTNGEKGCRIYHKDDEMTVPPFLAK-Q-----VDPTGAGDSFLGGLIVGLVEGLT-------VPDAALLGNLFGSITVEHIGQMMLQKVKDEVQRRK
;
END;

[ The following blocks are output data for analysis step 20452 ]
BEGIN TREES;
      TITLE Arabidopsis_PFKB;
      LINK TAXA = TaxaForAnalysisStep20452;
      TREE Fig._1 = [&R] (((((((Arabidopsis_thaliana_AT1G06020:0.039846,Arabidopsis_thaliana_AT1G06030:0.037452):0.066834,Arabidopsis_thaliana_AT2G31390:0.029256):0.051545,Arabidopsis_thaliana_AT3G59480:0.061366):0.177344,Arabidopsis_thaliana_AT4G10260:0.226047):0.068449,(Arabidopsis_thaliana_AT1G66430:0.176608,Arabidopsis_thaliana_AT5G51830:0.18731):0.082703):0.036028,(Arabidopsis_thaliana_AT3G54090:0.289285,Arabidopsis_thaliana_AT1G69200:0.580325):0.785176):0.677069,Arabidopsis_thaliana_AT1G17160:1.051649,Arabidopsis_thaliana_AT1G19600:1.241299,(Arabidopsis_thaliana_AT1G22940:2.795794,Arabidopsis_thaliana_AT5G58730:1.599276):0.259539,Arabidopsis_thaliana_AT1G49350:1.475911,(Arabidopsis_thaliana_AT3G09820:0.059895,Arabidopsis_thaliana_AT5G03300:0.016979):1.498004,Arabidopsis_thaliana_AT4G27600:1.584547,(Arabidopsis_thaliana_AT4G28706:0.320219,Arabidopsis_thaliana_AT5G43910:0.25042):0.939521,Arabidopsis_thaliana_AT5G19150:2.604661,Arabidopsis_thaliana_AT5G37850:2.300504,Arabidopsis_thaliana_AT1G06730:1.426301):0.0;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr103924]


END;