#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 11, 2025; 19:44 GMT TreeBASE (cc) 1994-2008 Study reference: Koch M., & Al-shehbaz I. 2004. Taxonomic and phylogenetic evaluation of the AmericanThlaspi species: Identity and relationships to the Eurasian genus Noccaea (Brassicaceae). Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1147] [ The following blocks are input data for analysis step 2075 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2075; DIMENSIONS NTAX=25; TAXLABELS Thlaspi_alpinum Thlaspi_bulbosum Thlaspi_calaminare Thlaspi_cepaeifolium Thlaspi_densiflorum Thlaspi_jankae Thlaspi_magellanicum_13 Thlaspi_magellanicum_4 Thlaspi_montanum Thlaspi_montanum_var_fendleri_10 Thlaspi_montanum_var_fendleri_21 Thlaspi_montanum_var_idahoense_11 Thlaspi_montanum_var_idahoense_8 Thlaspi_montanum_var_montanum_1 Thlaspi_montanum_var_montanum_14 Thlaspi_montanum_var_montanum_2 Thlaspi_montanum_var_montanum_3 Thlaspi_montanum_var_montanum_5 Thlaspi_montanum_var_montanum_9 Thlaspi_montanum_var_siskiyouense Thlaspi_natolicum Thlaspi_nevadense Thlaspi_perfoliatum_15 Thlaspi_perfoliatum_N Thlaspi_perfoliatum_S ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2435] TITLE ITS_Fig._2; LINK TAXA = TaxaForAnalysisStep2075; DIMENSIONS NCHAR=656; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Thlaspi_alpinum GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCAGCGGGCC-GGTTTCTTAGCCGATTCTGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTC-TATCAAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGA-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTATGCGGTTGGCCAAAATCCGAGCTAAGGGCGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGGTATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_bulbosum GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCCTGGTTTCTTAGCCGATTCTGTGCCCGCCGATTCCATGGTTTTGC-GAGTGGTTC-TATCAAGAT-----TTTTAATCCTGATTGGGCTATCAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCAAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGATGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGGTATTGTTGAACGCTCCTGTCCGAAGCTTTAGATGACCCAAAGATCTCAACGC Thlaspi_calaminare GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCAGCGGGGC-GGTTTCTTAGCCGATTCTGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTC-TATCAAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTTGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGAAGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGGTATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_cepaeifolium GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCAGCGGGCC-GGTTTCTTAGCCGATTCTGTGCCCGCTGGTTCCGTGGTTTTGC-GAGTGGTTC-TATCAAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGA-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCTTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGGTATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_densiflorum GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTATCCGATTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-GATCAAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCACGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTTCGCCGTCCTGGAAACAGTGAGTGTGCGGGATGCTGT-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCATCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATATAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_jankae GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGATTCTGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTC-TCTCAAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCTTGGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGGCGCCTGGAGCGTCTTGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAATATGACCCAAAGACCTCAACGC Thlaspi_magellanicum_13 GTGAACCTGCGGAAGGATCATTGCCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_magellanicum_4 GTGAACCTGCGGAAGGATCATTGCCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGATTCTGTGCCCGCCGATTCCGTGGTTTTGC-TAGTGGTTC-TATCGAGAT-----TATTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCGCCCCGGAAACGGTAAGTGTGCGGGATGCTGT-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCTTGGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCCCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_fendleri_10 GTGAACCTGCGGAAGGATCATTGTCGATACCTTGTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTAAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATACTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_fendleri_21 GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTCATCATCACTCTCAGCGGGCC-GGTTTCTTAGCTGACTCTGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATAATGATTGGGCTGTGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGCCAATGCAACTAAACAGCCTGCTTCCGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_idahoense_11 GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTCCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAAGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_idahoense_8 -------TGCGGAAGGATCATTGTCGATACCTTGTCCAAAACAGAACGA-CCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTCCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAA-TGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAAGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAAC-- Thlaspi_montanum_var_montanum_1 GTGAACCTGCGGAAGGATCATTGTCGACACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTGTGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_montanum_14 GTGAACCTGCGGAAGGATCATTGTCGACACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_montanum_2 GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCACGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_montanum_3 GTGAACCTGCGGAAGGATCATTGTCGATACCTTGTCCAAAACAGAATGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCTGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATAAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_montanum_var_montanum_5 GTGAACCTGCGGAAGGATCATTGTCGATACCTTGTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCCGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTAAATCCTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thlaspi_montanum_var_montanum_9 -------TGCGGAAGGATCATTGTCGATACCTTGTCCAAAACAGAACGACCCGAGAACGATTGATCATCACCCTCGGCGGGCC-GGTTTCTTAGCTGACTCTGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCTTGATTGGGCTATGAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAA-TGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATTCGGTGGTGAATTCAAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAAC-- Thlaspi_montanum_var_siskiyouense GTGAACCTGCGGAAGGATCATTGTCGATACCTTGTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCCGACTCTGTGCCTGCCGATTCCGTGGTTTTGC-GAGTGGTTC-TATCGAGAT-----TTTTAATCCTGATTGGGCTATAAGCTTAGCTTTCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGT-GCTGCGATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCGAGCCTCTTGATATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_natolicum -----------------------TGGATACCT-GTCCGAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTTGCAGATCTCGTGCCCGCTGATTCCGTGGTTTTGCTAAGTGGCTCCTGTCCGGATATATATTTTAATACTGATTGGGCCATGTGCTTAGCTTCCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCTCCCCGGAGACGGTGTGTGTGCGGGATGCTGT-GCTGCGATCTAAAGTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGTCCCCTATCCTCCTCTAAGGATACAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCGGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCGTCATACCGTCGAACGCTCTCGTCCGAAGCTTTAGATGACCCAAAGTCCTCAAC-- Thlaspi_nevadense GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCAAAACAGAACGACCCGAGAACGATTGATCATCACTCTCAGCGGGCC-GGTTTCTTAGCCGATTCTGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTC-TATCAAGAT-----TTTTAATCCTGATTGGGCTATGAGCTTAGCTTTCGGGAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCTGCCGCCCCGGAAACGGTGAGTGTGCGGGATGCTGA-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCAATCCTCTAAGGATAGAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTGGTATTGTTGAACGCTCCTGTCCGAAGCTTAAGATGACCCAAAGACCTCAACGC Thlaspi_perfoliatum_15 GTGAACCTGCGGAAGGATCATTGTCGATACCT-GTCCGAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCAGATCCCGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTCCTATCAGGATTTAT-TTTTATCCTTGATTGGGCTATGAGCTTAGCTTCCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTGAACAGCCTGCTTCCGCCTCCCCGGAGACGGTGTGTGTGCGGGATGCTGC-GCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCT-GGGTGTCACAAA---TCGTCGTCCCCTATCCTCTAAGGATACAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTGAGGACGCCGGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCGTCATACTGTCGAACGCTCTCGTCCGAAGCTTTAGATGACCCAAAGTCCTCAACGC Thlaspi_perfoliatum_N -----------------------TCGATACCT-GTCCGAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCGGATCCCGTGCCCGCTGATTCCGTGGTTTTGC-GAGTGGTTCCTATCAGGATTTA--TTTTATCCTTGATTGGGCTATGAGCTTAGCTTCCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTGAACAGCCTGCTTCCGCCTCCCCGGAGACGGTGTGTGTGCGGGATGCTCT-GCTGCGATCTAAAGTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGTCCCCTATCCTCTAAGGATACAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTGAGGACGCCGGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCGTCATACTGTCGAACGCTCCCGTCCGAAGCTTTAGATGACCCAAAGTCCTCAAC-- Thlaspi_perfoliatum_S -----------------------TCGATACCT-GTCCGAAACAGAACGACCCGAGAACGATTGATCATCACTCTCGGCGGGCC-GGTTTCTTAGCGGATCCCGTGCCCGCTGATTCCGTGGTTTTGC-GCGAGGCTCCTTTCAG--TGTATGTTTTTATCCTGATTGGGCTATGTGCTCAGCTTCCGGAAATTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACTAAACAGCCTGCTTCCGCCTCCCCGGAGACGGTGTGTGTGCGGGATGCTGA-GCTGCGATCTAAAGTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGTCCCCTATCCTCCTCTAAGGATACAGGACGGAAACTGGTCTCCCGTGTGTTACCGTACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCGGGAGCGTCTCGACATGCGGTGGTGAATTCAAGCCTCTTCATACTGTCGAACGCTCTCGTCCGAAGCTTTAGATGACCCAATGTCCTCAAC-- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_Fig._2) = N: 1-656; CODONPOSSET CodonPositions (CHARACTERS = ITS_Fig._2) = N: 1-656; END; [ The following blocks are output data for analysis step 2075 ] BEGIN TREES; TITLE Tb6850; LINK TAXA = TaxaForAnalysisStep2075; TREE Fig._2b = [&R] (((((Thlaspi_magellanicum_4,Thlaspi_magellanicum_13),Thlaspi_montanum_var_montanum_2,(Thlaspi_montanum_var_idahoense_11,Thlaspi_montanum_var_idahoense_8),(Thlaspi_montanum_var_montanum_1,Thlaspi_montanum_var_montanum_14),(Thlaspi_montanum_var_montanum_3,Thlaspi_montanum_var_siskiyouense),(Thlaspi_montanum_var_fendleri_10,Thlaspi_montanum_var_montanum_5),(Thlaspi_montanum_var_fendleri_21,Thlaspi_montanum_var_montanum_9)),Thlaspi_montanum),Thlaspi_densiflorum,Thlaspi_bulbosum,(Thlaspi_calaminare,Thlaspi_alpinum,Thlaspi_nevadense,Thlaspi_cepaeifolium),Thlaspi_jankae),(Thlaspi_perfoliatum_15,Thlaspi_perfoliatum_N),(Thlaspi_natolicum,Thlaspi_perfoliatum_S)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1771] END;