#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 10, 2025; 23:58 GMT TreeBASE (cc) 1994-2008 Study reference: Cacciali P., Morando M., Medina C.D., Koehler G., Motte M., & Avila L.J. 2017. Taxonomic analysis of Paraguayan samples of Homonota fasciata Duméril & Bibron (1836) with the revalidation of Homonota horrida Burmeister (1861) (Reptilia: Squamata: Phyllodactylidae) and the description of a new species. PeerJ, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20987] [ The following blocks are input data for analysis step 20786 ] BEGIN TAXA; TITLE TaxaForAnalysisStep20786; DIMENSIONS NTAX=21; TAXLABELS Homonota_andicola_LJAMMCNP12490 Homonota_andicola_LJAMMCNP12495 Homonota_borellii_LJAMMCNP12116 Homonota_borellii_LJAMMCNP12125 Homonota_darwinii_LJAMMCNP11432 Homonota_darwinii_LJAMMCNP9266 Homonota_rupicola_RUPI1 Homonota_rupicola_RUPI2 Homonota_spa_LJAMMCNP10577 Homonota_spa_LJAMMCNP5047 Homonota_spb_MNHNP11406 Homonota_spb_MNHNP11409 Homonota_taragui_LJAMMCNP14419 Homonota_taragui_LJAMMCNP14420 Homonota_underwoodi_LJAMMCNP10923 Homonota_underwoodi_LJAMMCNP10931 Homonota_uruguayensis_UFRGS1568 Homonota_uruguayensis_UFRGS2579 Homonota_whitii_LJAMMCNP12111 Homonota_williamsii_LJAMMCNP4467 Homonota_williamsii_LJAMMCNP6517 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41111] TITLE 19b_Matrix; LINK TAXA = TaxaForAnalysisStep20786; DIMENSIONS NCHAR=642; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Homonota_andicola_LJAMMCNP12490 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATTGATAAATGACACTCTAGACTCTATT----TATTTATTTA---------AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAAAAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACCTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCTTGTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_andicola_LJAMMCNP12495 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATTGATAAATGACACTCTATACTCTATT----TATTTATTTA---------AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAAAAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACCTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCTTGTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_borellii_LJAMMCNP12116 ?????????????????????????????????????GTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT-T---AAAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTGAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_borellii_LJAMMCNP12125 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT-TT---AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTGAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_darwinii_LJAMMCNP11432 ?????????????????????????????????????????????GTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTTTTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGATTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATTTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_darwinii_LJAMMCNP9266 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTTTTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGATTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATTTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_rupicola_RUPI1 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTGTTTATTT--AAAAAACAAACAAACATGTCTTGCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGCTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_rupicola_RUPI2 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTGTTTATTT--AAAAAACAAACAAACATGTCTTGCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGCTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_spa_LJAMMCNP10577 ?????????????????????????????????????GTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTTATTTATTTATTTATTTATTT-AAAAAAACAAAGAAACATGTCT-GATGTTCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACAAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_spa_LJAMMCNP5047 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTATTT-AAAAAAACAAAGAAACATGTCT-GATGT{GT}CTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACAAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_spb_MNHNP11406 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGATCACGGGACTCAGGAATCTGA Homonota_spb_MNHNP11409 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGATCACGGGACTCAGGAATCTGA Homonota_taragui_LJAMMCNP14419 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT---TAAAAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGATCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_taragui_LJAMMCNP14420 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT---TAAAAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGATCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_underwoodi_LJAMMCNP10923 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCT{AC}GACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAACTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_underwoodi_LJAMMCNP10931 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTCGACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAACTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_uruguayensis_UFRGS1568 ?????????????????????????????????????GTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTATTTATTTAAAAAAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAACCAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATACTGGATTATAACTTTGACACA-TTTCCTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAGGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACATAGGTCTAAGAACTGGACTAAATGTATTGGGGGG?????????????????????????????????? Homonota_uruguayensis_UFRGS2579 ??????????????????????????????????????TTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTATTTTAAAAAAACAAAC{AC}AACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATACTGGATTATAACTTTGACACA-TTTCCTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAGGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACATAGGTCTAAGAACTGGACTAAATGTATTGGGGG??????????????????????????????????? Homonota_whitii_LJAMMCNP12111 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATTGATAAATGACACTCTAGACTCTATT----TATTTATTTT---------AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAAAAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACCTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTAAGTCTTTCCTTGTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_williamsii_LJAMMCNP4467 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGATTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCA{AT}TACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_williamsii_LJAMMCNP6517 ????????????????????????????????????????TTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAAT{GT}TATTGGGGGG?????????????????????????????????? ; END; [ The following blocks are output data for analysis step 20786 ] BEGIN TREES; TITLE 19b_BI; LINK TAXA = TaxaForAnalysisStep20786; TREE con_50_majrule = [&R] (((Homonota_spa_LJAMMCNP10577:0.002283549,Homonota_spa_LJAMMCNP5047:0.001520966):0.005158715,(Homonota_spb_MNHNP11406:0.001603785,Homonota_spb_MNHNP11409:0.001580017):0.003646016):0.0040240565,((Homonota_underwoodi_LJAMMCNP10923:0.001518768,Homonota_underwoodi_LJAMMCNP10931:0.002157755):0.004900934,(((Homonota_andicola_LJAMMCNP12490:0.001514455,Homonota_andicola_LJAMMCNP12495:0.003598722,Homonota_whitii_LJAMMCNP12111:0.005572961):0.007516052,(Homonota_williamsii_LJAMMCNP6517:0.001643926,(Homonota_williamsii_LJAMMCNP4467:0.001566578,(Homonota_darwinii_LJAMMCNP11432:0.001600275,Homonota_darwinii_LJAMMCNP9266:0.001544441):0.005583095):0.003613693):0.006213847):0.008702338,((Homonota_borellii_LJAMMCNP12116:0.001611006,Homonota_borellii_LJAMMCNP12125:0.001556041):0.003539929,(Homonota_rupicola_RUPI1:0.001600033,Homonota_rupicola_RUPI2:0.00160202):0.005533148,(Homonota_taragui_LJAMMCNP14419:0.001561785,Homonota_taragui_LJAMMCNP14420:0.00154509):0.003656462,(Homonota_uruguayensis_UFRGS1568:0.01234245,Homonota_uruguayensis_UFRGS2579:0.003819425):0.009986215):0.005557396):0.01851073):0.0040240565); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr104070] END;