#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 10, 2025; 23:56 GMT TreeBASE (cc) 1994-2008 Study reference: Cacciali P., Morando M., Medina C.D., Koehler G., Motte M., & Avila L.J. 2017. Taxonomic analysis of Paraguayan samples of Homonota fasciata Duméril & Bibron (1836) with the revalidation of Homonota horrida Burmeister (1861) (Reptilia: Squamata: Phyllodactylidae) and the description of a new species. PeerJ, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20987] [ The following blocks are input data for analysis step 20787 ] BEGIN TAXA; TITLE TaxaForAnalysisStep20787; DIMENSIONS NTAX=22; TAXLABELS Homonota_andicola_LJAMMCNP12490 Homonota_andicola_LJAMMCNP12495 Homonota_borellii_LJAMMCNP12116 Homonota_borellii_LJAMMCNP12125 Homonota_darwinii_LJAMMCNP11424 Homonota_darwinii_LJAMMCNP9266 Homonota_rupicola_RUPI1 Homonota_rupicola_RUPI2 Homonota_spa_LJAMMCNP10577 Homonota_spa_LJAMMCNP5047 Homonota_spb_MNHNP11406 Homonota_spb_MNHNP11409 Homonota_taragui_LJAMM_CNP14419 Homonota_taragui_LJAMM_CNP14420 Homonota_underwoodi_LJAMMCNP10923 Homonota_underwoodi_LJAMMCNP10931 Homonota_uruguayensis_UFRGS1568 Homonota_uruguayensis_UFRGS2579 Homonota_whitii_LJAMMCNP12110 Homonota_whitii_LJAMMCNP14388 Homonota_williamsii_LJAMMCNP4467 Homonota_williamsii_LJAMMCNP6517 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41122] TITLE 30b_Matrix; LINK TAXA = TaxaForAnalysisStep20787; DIMENSIONS NCHAR=664; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Homonota_andicola_LJAMMCNP12490 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCCGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTATTGCACTGTATATTTCTCCTTCCTTCGA Homonota_andicola_LJAMMCNP12495 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCC{AC}GTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTATTGCACTGTATATTTCTCCTTCCTTCGA Homonota_borellii_LJAMMCNP12116 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCT{AG}TATGAGCACCAGGGCGCATGGCAGACACTGCA{CT}GAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_borellii_LJAMMCNP12125 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGCGCATGGCAGACACTGCA{CT}GAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_darwinii_LJAMMCNP11424 ???????????????????????????GTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCGTCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACATCTTGTTGATTAACTGATCACCGCTTGATCACCACTTGTGAGCAGGAAGGGTGTTTGGGCACCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTTTTTTTAAGATTCATTCCAACTTAGTCTGACGAAGTGCATGCCATGAACGAAAGCTCACTAAAAATATAATATTGTTGGTCTTAAAGGTGCAATTGGAATCTATCTTTTTTCTTTGGGTTCTTCTTGTTTGGCATCTGGTTTCTTTCTTCCCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAACTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTCTATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATTTCTCCTTCCTTCGA Homonota_darwinii_LJAMMCNP9266 ?????????????????????????????AGATCAGAAGCCAATTCCTTGCTGAACCCTCATCGTCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACATCTTGTTGATTAACTGATCACCGCTTGATCACCACTTGTGAGCAGGAAGGGTGTTTGGGCACCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTTTTTTTAAGATTCATTCCAACTTAGTCTGACGAAGTGCATGCCATGAACGAAAGCTCACTAAAAATATAATATTGTTGGTCTTAAAGGTGCAATTGGAATCTATCTTTTTTCTTTGGGTTCTTCTTGTTTTGCATCTGGTTTCTTTCTTCCCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAACTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTCTATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATTTCTCCTTCCTTCGA Homonota_rupicola_RUPI1 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTGGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTGACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCTGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTATTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGCGCATGGCAGACACTGCACAAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_rupicola_RUPI2 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTGGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTGACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCTGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTATTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGCGCATGGCAGACACTGCACAAGTGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_spa_LJAMMCNP10577 ??????????????????????????????????????????????CTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATGAACTGATCACCCCTTGACCACCCCTTGTGAACAG{AG}AAGGG------------------------------TGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGG{CT}ATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAG{GT}CCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCGGGCCACATGGCAGATAC??????????????????????????????????????????????? Homonota_spa_LJAMMCNP5047 ?????????????????????????????????????????????????????????????TCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGGCAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGAT{CG}AACTGATCACC{AC}CTTGACCACCCC{GT}TGTGAACAG{AG}AAGGGTGTTTGGGCATCCCTAATGAAAA{CT}AGTAGTTGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGG{CT}ATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAG{GT}CCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCGGGCCACATGGCAGATAC??????????????????????????????????????????????? Homonota_spb_MNHNP11406 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGGCAGTTCTTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGGCAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGACCACCACGTGTGAACAGGAAAGGTGTTTGGGCATCCCTAATGAAAACAGTATTTGC-------------AGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTG-TTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTGAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAG{AC}CAGCTATATGAGCACCGGGCCACATGGCAGATACCGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_spb_MNHNP11409 ????????????????????????????????????AAGGCAGTTCTTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTG{AG}TGGCTACAAGTAGGCAGTTCCTGCAGACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGACCACCACGTGTGAACAGGAAAGGTGTTTGGGCATCCCTAATGAAAACAGTATTTGC-------------AGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTG-TTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTGAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAG{AC}CAGCTATATGAGCACCGGGCCACATGGCAGATACCGCACAAGCATGTTG???????????????????????????????? Homonota_taragui_LJAMM_CNP14419 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCCTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTGTATGAGCACCAGGGCGCATGGCAGACACTGCACGAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_taragui_LJAMM_CNP14420 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCCTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTGTATGAGCACCAGGGCGCATGGCAGACACTGCACGAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_underwoodi_LJAMMCNP10923 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAGTTCCTTG{CT}TGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGGCAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCCCTTGACCACCCCTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATACTAGTTGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAAACAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTTTCTTAAGCCAGCTGTATGAGCACCAGGCCACATGGCAGATACCGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_underwoodi_LJAMMCNP10931 ???????????????GAAATCTCACCAGTAGATCAGAAGCCAGTTCCTTG{CT}TGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAG{AG}CAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCCCTTGACCACCCCTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATACTAGTTGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAAACAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTGTATGAGCACCAGGCCACATGGCAGATACCGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_uruguayensis_UFRGS1568 ???????????????????????????????????????????TTCCTTGCTGAACCCTCACCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAACAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCATTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGTGCATGGCAGACACTGCACGAGCGTGTTGTCTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_uruguayensis_UFRGS2579 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCACCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAACAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCATTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGTGCATGGCAGACACTGCACGAGCGTGTTGTCTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_whitii_LJAMMCNP12110 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACCGTGACTGTGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_whitii_LJAMMCNP14388 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACC{CG}TGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTCTTGC{AG}CTGTATATTTCTCCTTCCTTCGA Homonota_williamsii_LJAMMCNP4467 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCTTTGCTGAACCCTCATCGTCTGGGAGTCTGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGATCGCCACTTGTGAACAGGAAGGGTGTTCGGTCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCGTGGCTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTGCCCTTACAAC{AG}GCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGCAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTACATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATCTCTCCTTCCTTCGA Homonota_williamsii_LJAMMCNP6517 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCGTCTGGGAGTCTGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGATCGCCACTTGTGAACAGGAAGGGTGTTCGGTCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCGTGGCTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTGCCCTTACAACAGCTTCTGTTATGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTACATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATCTCTCCTTCCTTCGA ; END; [ The following blocks are output data for analysis step 20787 ] BEGIN TREES; TITLE 30b_ML; LINK TAXA = TaxaForAnalysisStep20787; TREE tree_1 = [&R] (((Homonota_spb_MNHNP11406:1.20367509047041E-6,Homonota_spb_MNHNP11409:0.0021389999021307594):0.014280258947740045,((Homonota_spa_LJAMMCNP10577:0.002439728908847707,Homonota_spa_LJAMMCNP5047:1.20367509047041E-6):0.0028041053619869295,(Homonota_underwoodi_LJAMMCNP10923:0.0019275426584180928,Homonota_underwoodi_LJAMMCNP10931:0.0018738313399781661):0.009266951524331733):0.006128907988714546):0.007765281492800542,(((Homonota_darwinii_LJAMMCNP11424:1.20367509047041E-6,Homonota_darwinii_LJAMMCNP9266:0.0016020928646318508):0.020396686023997967,((Homonota_williamsii_LJAMMCNP4467:0.003914825849704154,Homonota_williamsii_LJAMMCNP6517:0.0019357714571436161):0.019351403063067436,((Homonota_andicola_LJAMMCNP12490:1.20367509047041E-6,Homonota_andicola_LJAMMCNP12495:1.20367509047041E-6):0.0037861998487960314,(Homonota_whitii_LJAMMCNP12110:0.00188249959745531,Homonota_whitii_LJAMMCNP14388:1.20367509047041E-6):1.20367509047041E-6):0.012068916478558175):0.004065023986260742):0.003835218802588729,((Homonota_rupicola_RUPI1:1.20367509047041E-6,Homonota_rupicola_RUPI2:0.0018515226474127655):0.007794588086901254,((Homonota_uruguayensis_UFRGS1568:1.20367509047041E-6,Homonota_uruguayensis_UFRGS2579:1.20367509047041E-6):0.015255560313659357,(Homonota_borellii_LJAMMCNP12125:1.20367509047041E-6,(Homonota_borellii_LJAMMCNP12116:1.20367509047041E-6,(Homonota_taragui_LJAMM_CNP14419:1.20367509047041E-6,Homonota_taragui_LJAMM_CNP14420:1.20367509047041E-6):0.003728555650022987):1.20367509047041E-6):1.20367509047041E-6):0.001587315111570194):0.018637528594090756):0.007765281492800542); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr104092] END;