#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 22, 2026; 16:56 GMT

TreeBASE (cc) 1994-2008

Study reference:
Abreu V.P., & Pereira O.L. 2017. Dictyosporina ferruginea. Fungal Diversity Notes,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S21221]

[ The following blocks are input data for analysis step 21172 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep21172;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Dictyosporina_ferruginea_COAD2272
            Mycosphaerella_punctiformis_CBS113265
            Neoceratosperma_eucalypti_CPC23465
            Pseudocercospora_vitis_CBS132012
            Stigmina_platani
            'Stigmina platani STE-U4299'
            Xenomycosphaerella_elongata_CBS120735
            Xenomycosphaerella_yunnanensis_CBS119975
            Xenosonderhenia_syzygii_CPC19790
            Xenostigmina_zilleri_CBS115686
            Xenostigmina_zilleri_CBS124108
            Zasmidium_cellare_CBS146.36
            Zasmidium_cellare_TEA096
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41697]

	TITLE Dictyosporina_ferruginea_ITS;
	LINK TAXA = TaxaForAnalysisStep21172;
	DIMENSIONS NCHAR=527;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                    10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       ]
[                                                     .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]
Dictyosporina_ferruginea_COAD2272            ????????????????????????????????????????????????????????????????????????????CGGGGGCGACCCTGCCGT---TCCGACGGCG----AGCGCCCCCGGAGA--CCGTCCAACGC---TGCATCCGTG---CGTCCGAGTCTGAATC-AAATCAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCGCGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCCGGCTTGGTATTGGG----CGCCGCGTCTC------GACGCGCGCCTCAAAGTCTC-CCGGCTGAGCCGTCCGTCTCCCAGCGTTGTG-ACCCAGTG-----TCGC-TGCGGAG-CACAGGTGGCCGCGGCCGTTCTA-ACTTTTCGAAAGGTTGACCTCGGATCAGGTAGGGAT
Mycosphaerella_punctiformis_CBS113265        ?????AGGGATCATTACTGAGTGAGGGCTTCCGGCCCG-ACCTCCAACCC--TTTGTGAA-CACATCTTGTTGCTTCGGGGGCGACCCTGCCGT----------TCGCGGCATTCCCCCCGGAGG-TCATCAAAACAC---TGCATTCTTA---CGTCGGAGTAAAAAGT-TAATTTAATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTCGCTTGGTATTGGG----CGTCGCGAGTC-----TCTCGCGCGCCTCAAAGTCT--CCGGCTGTGCGGTTCGTCTCCCAGCGTTGTG-GCAACTAT----TTCGC-AGTGGAG-TTCGAGTCGTCGTGGCCGTTAAATCTTT---CAAAGGTTGACCTCGGATCAGG???????
Neoceratosperma_eucalypti_CPC23465           TGCGGAGGGATCATTACTGAGTGAGGACCCCGCGTCCG-ACCTCCAACCC--TCTGTGAACCAACACT-GTTGCTTCGGGGGCTCCCCTGCCGT----TCGGGCTCG-----GGGCCCCCGGAGG-AAATCAAAACGC---TGCATCTGTG---CGTCGGAGTATCAATC-AAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTAGCTTGGTATTGGG----CGTCGCGGCTC--------CGCGCGCCTCAAAGTCT--CCGGCTGAGCTGTCCGTCTCCTAGCGTTGTG-ACACACGA-----TCGC--TCCGAG-TTCGAACAGCCGCGGCCGTTAAA--CTTCATCAAAGGTTGACCTCGGATCAGGTAGGGAT
Pseudocercospora_vitis_CBS132012             ?????????ATCATTACTGAGTGAGGGC-TCGCGCCCG-ACCTCCAACCC--TTTGTGAACCAAATCCTGTTGCTTCGGGGGCGACCCTGCCGGCACACCGTCGCCG----GGCGCCCCCGGAGG--TCTTCAAACAC---TGCATCTTTG---CGTCGGAGTTTAAATC-AAATTAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTAGCTTGGTATTGGG----CGTCGCGGCTC--------CGCGCGCCTTAAAGTCT--CCGGCTGAGCTGTCCGTCTCTAAGCGTTGTG-GAAATTCAACTATTCGC-TTCGGAG-TGCGGGCGGCCGCGGCCGTTAAATCTTTATTCAAAGGTTGACC?????????????????
Stigmina_platani                             T-CGGAGGGATCATTAGTGAGTGAGGGC-TCACGCCCGAACCTCCAACCC--TTTG-GAAACACATCT-GGTGCTTCGGGGGCGACCCGGCCGG--------TGCCG----GGCGCCCCCGGAGG-TCTTCTCAACAC---TGCATTTTTG---CGTCCGAGTCTGATAC-AAATCAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGTCGCGGCTC------CCCGCGCGCCTTAAAGTCC--CCGGCTGAGCTGTCCGTCTCCAAGCGTTGTG-GCATTCAA-CTATTCGC-TTTGGAG-CACGGGCGGCCGCGGCCGTTAAATCCTCGCACAA--GCTTATCAAGAGCGAAGGAG????
'Stigmina platani STE-U4299'                 ?????AGGGATCATTACTGAGTGAGGGC-TCACGCCCG-ACCTCCAACCC--TTTGTGAA-CACATCTCGTTGCTTCAGAGGCGACCCGGCCGG--------TGCCG----GGCGCCCCCGGAGG-TCTTCTCAACAC---TGCATTTTTG---CGTCCGAGTCTGATAC-AAATCAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGTCGCGGCTC------CCCGCGCGCCTTAAAGTCC--CCGGCTGAGCTGTCCGTCTCCAAGCGTTGTG-GCATTTCAACTATTCGC-TTTGGAG-CGCGGGCGGCCGCGGCCGTTAAATCCTCACACAA-GGTTGACCTCGGATCAGGTAGGGAT
Xenomycosphaerella_elongata_CBS120735        ?????????ATCATTACTGAGTGAGGGT-TCACGCCCG-ACCTCCAACCC--CATGTGAATTCGACT--GTTGCTTCGGGGGCGACCCTGCCGT----TCGACGGCG----AGCGCTCCCGGGGA--TCATTAAACTC---TGCATCATTG---CGTCGGAGTATCAATCAAAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGCCGCGTCTC------GACGCGCGCCTCAAAGTCTC-CCGGCTGAGCCGCCCGTCTCCCAGCGTTGTA-ATATATGA-----TCGC-TTCGGAG-TGCGGGTGGCCGCGGCCGTTAAACTCTTTATCAAAGGTTGACC?????????????????
Xenomycosphaerella_yunnanensis_CBS119975     ?????????ATCATTACTGAGTGAGGGCCTCCGGTCCG-ACCTCCAACCC--TTTGTGAACCAACACT-GTTGCTTCGGGGGCGACCCTGCCTT---TCGGGC--AG----TGCGCCCCCGGAGG-ATATCAAAACGC---TGCATCTTTG---CGTCGGAGTATCAATC-AAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGTCGCGAGTC--------CGCGCGCCTCAAAGTCT--CCGGCTGAGCTGTCCGTCTCCCAGCGTTGTG-AATCTCAT-----TCGC-TACGGAGTCTCGGGCAGCCGCGGCCGTTAAAC--TTATCTAAAGGTTGACC?????????????????
Xenosonderhenia_syzygii_CPC19790             TGCGGAGGGATCATTACCGAGTGAGGGC-TCACGCCCG-ACCTCCAACCC--CATGTGAACCGCGACC-GTTGCTTCGGGGGCGACCCTGCCGT---TCCGACGGCG----AGCGCCCCCGGAGG--CCATCGAACTC---TGCATCTCTG---CGTCGGAGTATCAATC-AAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGCCGCGTCTC------GACGCGCGCCTCAAAGTCTC-CCGGCTGAGCTGTCCGTCTCCCAGCGTTGTG-ACACATTA-----TCGC-TCCGGAG-TGCGGGTGGTCGCGGCCGTTAAATTCTTAATCAAAGGTTGACCTCGGATCAGGTAGGGAT
Xenostigmina_zilleri_CBS115686               ?????AAGGATCATTACCGTGGGGATTCGTCCCCATTG-AGATAGCACCC--TTTGTTCATGAGTACC-CTTGTTTCCTCGGCGGGCCTGCC---------------------CGCCAGTAGGACAATATCAAAACCCTTTTGCAGTAGTAGTAACTTCAGTTAATAAAC-AAAT--ATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCGTTGGGCATGCCTGTTCGAGCGTCATTTAAACCTTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCCGCCTCAGCGCGTGGACTCGCCTCAAATCCA-------TTGGCAGCCGGTATGTTGGCTTCGTGCGCAGCACA-----TTGCAAGCGGAA-CTCAGCAGACCTCCTCCCACAAGCCCTTTTTTTA--CTTGACCTCGGATCAGGTAGG???
Xenostigmina_zilleri_CBS124108               TGCGGAAGGATCATTACCGTGGGGATTCGTCCCCATTG-AGATAGCACCC--TTTGTTCATGAGTACC-CTTGTTTCCTCGGCGGGCCTGCC---------------------CGCCAGTAGGACAATATCAAAACCCTTTTGCAGTAGTAGTAACTTCAGTTAATAAAC-AAAT--ATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCGTTGGGCATGCCTGTTCGAGCGTCATTTAAACCTTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCCGCCTCAGCGCGTGGACTCGCCTCAAATCCA-------TTGGCAGCCGGTATGTTGGCTTCGTGCGCAGCACA-----TTGCAAGCGGAA-CTCAGCAGACCTCCTCCCACAAGCCCTTTTTTTA--CTTGACCTCGGATCAGGTAGGGAT
Zasmidium_cellare_CBS146.36                  ??????GGGATCATTACTGAGTGAGGGT-TCCGGCCCG-ACCTCCAACCCTTTTTGTGAACCACCTC--GTTGCCTCGGGGGCGACCCTGCCGTGCTCTCGGGTGCGGTG-GGGGCTCCCGGCGGCCCCTTCAAACCC---TGCGTAACTGAGCCGTCGGAGTTTAAAC--AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCGGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACGCCAATCGAGCCTGGCTCGGTGTTGGG----CGTCGCGGGCTGCGCAGCCCGCGCGCCTTAAAGTCTCACCGGCTGAGCGACCCTCCTCTAAGCGTTGTG-GAAACTAT-----TCGC-GGCGAGG--GCGGGCGG-CGCGGCCGTTAAACACCCCATCAAAGGTTGACCTCGGATCAGGTA?????
Zasmidium_cellare_TEA096                     TGCGGAGGGATCATTACTGAGCGAGGGT-TCCGGCCCG-ACCTCCAACCCCTTTTGTGAACCACCTC--GTTGCCTCGGGGGCGACCCTGCCGTGCTCTCGGGTGCGGTGCGGGGCTCCCGGCGGCCCCTTCAATCCC---TGCGTAACTGAGCCGTCGGAGTTTAAAC--AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCGGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACGCCAATCGAGCCTGGCTCGGTGTTGGG----CGTCGCGGGCTGCGCAGCCCGCGCGCCTTAAAGTCTCACCGGCTGAGCGACCCTCCTCTAAGCGTTGTG-GAAACTAT-----TCGC-GGCGAGG--GCGGGCGG-CGCGGCCGTTAAATACCCCATCAAAGGTTGACCTCGGATCAGGTAGGGAT
;
END;

[ The following blocks are output data for analysis step 21172 ]
BEGIN TREES;
      TITLE Dictyosporina_ferruginea_ITS;
      LINK TAXA = TaxaForAnalysisStep21172;
      TREE con_50_majrule = [&R] ((Xenostigmina_zilleri_CBS115686:0.001575807,Xenostigmina_zilleri_CBS124108:0.001564906):0.3575365,(Mycosphaerella_punctiformis_CBS113265:0.1009864,(Zasmidium_cellare_CBS146.36:0.003541123,Zasmidium_cellare_TEA096:0.007960551):0.1754311,(Pseudocercospora_vitis_CBS132012:0.0186298,('Stigmina platani STE-U4299':0.004814873,Stigmina_platani:0.04693874):0.06736111):0.02481532,((Xenomycosphaerella_yunnanensis_CBS119975:0.04483606,Neoceratosperma_eucalypti_CPC23465:0.0561782):0.02801847,(Xenosonderhenia_syzygii_CPC19790:0.01604411,(Dictyosporina_ferruginea_COAD2272:0.09356719,Xenomycosphaerella_elongata_CBS120735:0.05400061):0.01233146):0.04328945):0.03338384):0.3575365);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr105570]


END;