#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 01, 2024; 15:51 GMT TreeBASE (cc) 1994-2008 Study reference: Fujiwara T., Uehara A., Iwasina T., Matsumoto S., Chao Y.S., Chang Y.H., & Watano Y. 2017. Allotetraploid cryptic species in Asplenium normale in the Japanese Archipelago, detected by chemotaxonomical and multi-locus genotype approaches. American Journal of Botany, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21348] [ The following blocks are input data for analysis step 21298 ] BEGIN TAXA; TITLE TaxaForAnalysisStep21298; DIMENSIONS NTAX=32; TAXLABELS Asplenium_boreale_Allele_1_018 Asplenium_boreale_Taiwan_368 Asplenium_normale_Allele_a_MLG3_O Asplenium_normale_Allele_a_MLG4_N Asplenium_normale_Allele_a_MLG7_N Asplenium_normale_Allele_b_MLG6_N Asplenium_normale_Allele_d_MLG6_O Asplenium_normale_Taiwan_360 Asplenium_normale_Taiwan_369_N Asplenium_normale_Taiwan_369_O Asplenium_normale_Taiwan_373 Asplenium_normale_Taiwan_378 Asplenium_normale_Taiwan_384 Asplenium_oligophlebium_var_iezimaense_342 Asplenium_oligophlebium_var_oligophlebium_029 Asplenium_oligophlebium_var_oligophlebium_153 Asplenium_oligophlebium_var_oligophlebium_164 Asplenium_shimurae_Alele_1_085 Asplenium_shimurae_Allele_2_085 Asplenium_trichomanes_066 allele_2_Asplenium_boreale_018 allele_a_MLG1_N allele_a_MLG1_O allele_a_MLG3_N allele_a_MLG5_N allele_a_MLG7_O allele_b_MLG2_N allele_b_MLG2_O allele_b_MLG8_N allele_c_MLG4_O allele_d_MLG5_O allele_e_MLG8_O ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41998] TITLE Asplenium_PGI; LINK TAXA = TaxaForAnalysisStep21298; DIMENSIONS NCHAR=411; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Asplenium_boreale_Allele_1_018 TACAACAGGCAATTTCTTCTATTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGCTTATTTTTAGCGTGAGTGTTCATAAGGTC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCATGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCGTAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACA???????AATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_boreale_Taiwan_368 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_normale_Allele_a_MLG3_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_normale_Allele_a_MLG4_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC Asplenium_normale_Allele_a_MLG7_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC Asplenium_normale_Allele_b_MLG6_N TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_normale_Allele_d_MLG6_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGATGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_360 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_369_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_369_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_373 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_378 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_384 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_iezimaense_342 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCAGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_oligophlebium_029 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTCTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATACTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_oligophlebium_153 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGATGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_oligophlebium_164 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCAGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_shimurae_Alele_1_085 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC Asplenium_shimurae_Allele_2_085 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTTCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_trichomanes_066 TACAACAGGCAATTCCTTATTCTCTATATGTTTGAGAAGCAAAAGCTGACCATATTATTGAATGCACATTTATTTCTGGTGATATTTAAGACCTGCCTGTTTA?TTTTAGCGCGAGTGTTCATAATGTTGTTGCCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGCTACCTCCCCTCCCCCTTTCCAACCGGCCTCTCCTCCTTCCTAGTCCCTGCCTCCACGTCCCTGCCCTG?????????TCTCTATACGACATTGTTCGTAGTGCATATTGCATAATAAAGAGAGGGATCCAGTTTGGAACATAGAATAAGTCTAGGGGATGCTGCTTTATGCTTTTCCTGCTTTTTGC allele_2_Asplenium_boreale_018 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCGTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_a_MLG1_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_a_MLG1_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_a_MLG3_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_a_MLG5_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_a_MLG7_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_b_MLG2_N TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC allele_b_MLG2_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTCTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATACTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_b_MLG8_N TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC allele_c_MLG4_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGGTC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAAAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTAAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_d_MLG5_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGATGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_e_MLG8_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCAGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41999] TITLE Asplenium_PGI_indels; LINK TAXA = TaxaForAnalysisStep21298; DIMENSIONS NCHAR=8; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z" MISSING=? GAP= -; MATRIX Asplenium_boreale_Allele_1_018 01001011 Asplenium_boreale_Taiwan_368 01011010 Asplenium_normale_Allele_a_MLG3_O 01011010 Asplenium_normale_Allele_a_MLG4_N 00101000 Asplenium_normale_Allele_a_MLG7_N 00101000 Asplenium_normale_Allele_b_MLG6_N 00001000 Asplenium_normale_Allele_d_MLG6_O 01010010 Asplenium_normale_Taiwan_360 00001000 Asplenium_normale_Taiwan_369_N 00101000 Asplenium_normale_Taiwan_369_O 01011010 Asplenium_normale_Taiwan_373 00001000 Asplenium_normale_Taiwan_378 00001000 Asplenium_normale_Taiwan_384 00001000 Asplenium_oligophlebium_var_iezimaense_342 01010010 Asplenium_oligophlebium_var_oligophlebium_029 01010010 Asplenium_oligophlebium_var_oligophlebium_153 01010010 Asplenium_oligophlebium_var_oligophlebium_164 01010010 Asplenium_shimurae_Alele_1_085 00101000 Asplenium_shimurae_Allele_2_085 00001000 Asplenium_trichomanes_066 1000?1?0 allele_2_Asplenium_boreale_018 01011010 allele_a_MLG1_N 00101000 allele_a_MLG1_O 01011010 allele_a_MLG3_N 00101000 allele_a_MLG5_N 00101000 allele_a_MLG7_O 01011010 allele_b_MLG2_N 00001000 allele_b_MLG2_O 01010010 allele_b_MLG8_N 00001000 allele_c_MLG4_O 01011010 allele_d_MLG5_O 01010010 allele_e_MLG8_O 01010010 ; END; [ The following blocks are output data for analysis step 21298 ] BEGIN TREES; TITLE 'Asplenium PgiC_ML'; LINK TAXA = TaxaForAnalysisStep21298; TREE bestREP6 = [&R] ((((allele_a_MLG1_N:1.0E-8,allele_a_MLG3_N:1.0E-8,Asplenium_normale_Allele_a_MLG4_N:1.0E-8,allele_a_MLG5_N:1.0E-8,Asplenium_normale_Allele_a_MLG7_N:1.0E-8,Asplenium_normale_Taiwan_369_N:1.0E-8,Asplenium_shimurae_Alele_1_085:1.0E-8):0.0193692,(allele_b_MLG2_N:1.0E-8,Asplenium_normale_Allele_b_MLG6_N:1.0E-8,allele_b_MLG8_N:1.0E-8,Asplenium_normale_Taiwan_360:1.0E-8,Asplenium_normale_Taiwan_373:1.0E-8,Asplenium_normale_Taiwan_378:1.0E-8,Asplenium_normale_Taiwan_384:1.0E-8):0.00423454,Asplenium_shimurae_Allele_2_085:0.00211231):0.00710964,(((((allele_b_MLG2_O:1.0E-8,Asplenium_oligophlebium_var_oligophlebium_029:1.0E-8):0.00435381,(allele_d_MLG5_O:1.0E-8,Asplenium_normale_Allele_d_MLG6_O:1.0E-8,Asplenium_oligophlebium_var_oligophlebium_153:1.0E-8):0.00217603,(allele_e_MLG8_O:1.0E-8,Asplenium_oligophlebium_var_oligophlebium_164:1.0E-8,Asplenium_oligophlebium_var_iezimaense_342:1.0E-8):0.00217514):0.00217793,Asplenium_normale_Allele_a_MLG3_O:1.0E-8,allele_a_MLG7_O:1.0E-8,Asplenium_normale_Taiwan_369_O:1.0E-8,allele_2_Asplenium_boreale_018:0.00218318,Asplenium_boreale_Taiwan_368:1.0E-8,allele_a_MLG1_O:1.0E-8):0.00436809,allele_c_MLG4_O:0.00217797):0.00266293,Asplenium_boreale_Allele_1_018:0.01083526):0.01192334):0.034053785,Asplenium_trichomanes_066:0.034053785); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr105919] END;