#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 18:30 GMT TreeBASE (cc) 1994-2008 Study reference: Zimmermann W., & Kammerer R. 2016. Coevolution of paired receptors in Xenopus carcinoembryonic antigen-related cell adhesion molecule families suggests appropriation as pathogen receptors. BMC Genomics, 17: 928. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20145] [ The following blocks are input data for analysis step 21320 ] BEGIN TAXA; TITLE TaxaForAnalysisStep21320; DIMENSIONS NTAX=39; TAXLABELS Xenopus_tropicalis_Ceacam302N Xenopus_tropicalis_Ceacam303N Xenopus_tropicalis_Ceacam304N Xenopus_tropicalis_Ceacam307N Xenopus_tropicalis_Ceacam308N Xenopus_tropicalis_Ceacam309N Xenopus_tropicalis_Ceacam311N Xenopus_tropicalis_Ceacam313N1 Xenopus_tropicalis_Ceacam314N Xenopus_tropicalis_Ceacam315N Xenopus_tropicalis_Ceacam316N Xenopus_tropicalis_Ceacam317N Xenopus_tropicalis_Ceacam318N1 Xenopus_tropicalis_Ceacam319N Xenopus_tropicalis_Ceacam320N Xenopus_tropicalis_Ceacam321N Xenopus_tropicalis_Ceacam350N Xenopus_tropicalis_Ceacam351N Xenopus_tropicalis_Ceacam353P_N Xenopus_tropicalis_Ceacam354N Xenopus_tropicalis_Ceacam355N Xenopus_tropicalis_Ceacam356N Xenopus_tropicalis_Ceacam357N Xenopus_tropicalis_Ceacam358N Xenopus_tropicalis_Ceacam359N Xenopus_tropicalis_Ceacam360N Xenopus_tropicalis_Ceacam361N Xenopus_tropicalis_Ceacam362N Xenopus_tropicalis_Ceacam363N1 Xenopus_tropicalis_Ceacam364N Xenopus_tropicalis_Ceacam365N1 Xenopus_tropicalis_Ceacam366N Xenopus_tropicalis_Ceacam367N Xenopus_tropicalis_Ceacam368N Xenopus_tropicalis_Ceacam369N Xenopus_tropicalis_Ceacam370N Xenopus_tropicalis_Ceacam371N Xenopus_tropicalis_Ceacam372N Xenopus_tropicalis_Ceacam375N ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M43794] TITLE 'Xenopus tropicalis carcinoembryonic antigen-related cell adhesion molecule '; LINK TAXA = TaxaForAnalysisStep21320; DIMENSIONS NCHAR=107; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 ] [ . . . . . . . . . . ] Xenopus_tropicalis_Ceacam302N QNVFE-GIVGGSVNLTVKLNLPANRLVQWKFK-----TSTLIVTGLPGGSPLYTDD--YKGRCHLYENSTLRLDNLTPADEGNYTLSVTNQGNGDTE-TGSVMLLIY Xenopus_tropicalis_Ceacam303N ENVT--GTVGKSVYLTVKLDLPAQRQVTWKVN-----SSTQIVTAVTGGSPVYFGD--YGGRCTLYENTTLRLDNLTPTDTGEYTLTVANTGTGATQ-SGSVYLTVN Xenopus_tropicalis_Ceacam304N QSVS--GIVGGSVTLTAILNVPAQPVVTWRFG------TDQIAYAALGNSAVYNNS--CTDRCTLYGNASLRLGSLTPADTGEYSLTVLNVPAGTQQ-TELFHLSVY Xenopus_tropicalis_Ceacam307N DNVA--GTEGKSVYLTVRLDLPAQRQVTWRVN-----SSSQIVTAVTGGSPVYAAD--YRDRCHLYGNATLQLDNLTPADTGEYTLSVANVSTGATE-SGSVYLTVY Xenopus_tropicalis_Ceacam308N ENVT--GTEGKSVYLTVKLDLPAQRQVTWKVN-----SSIQIVTALPGVSPVYTDS--YRDRCSLYGNTTLRLDNLTLTDTGEYSLSVTNLETGAPPVTGSVYLTVY Xenopus_tropicalis_Ceacam309N ENVQ--GIEGQSVTLSVNLTLFENQMITWYFN-----KYSLVASETTNNAPSFFGG--YEGRCTLFENATLQLDNLTPADQGNYTLTVLNLDTGLSV-SGLVCLTVQ Xenopus_tropicalis_Ceacam311N ENVQ--GIEGESVTLSINLNVTVFILIEWSFD------SHSMIAMLTGNSPIYFGE--YEGRCTLFENATLQLDNLTPADQGNYTLTVLDGETGMPV-SGSVCLSVQ Xenopus_tropicalis_Ceacam313N1 FMLL-HGIEGRAVYFPIYMTLPKNHRKQWWFD-----TSTLIVTDFSNGITSYTEE--YKDRCSIYINSTLRMDKLTLADQGMYSLNVTNLDNGHSQ-SESLYLMVY Xenopus_tropicalis_Ceacam314N DNVQ--VFEGESVTLSVNLNMSEYQMITWKFD-----TYTLVAIKTVNNTPTCFPE--YEGRCTLFANATLLLDNLTPAEEGNYTLTVMDVETGASL-SGSIFLSVQ Xenopus_tropicalis_Ceacam315N E----SGELGKSVYLTVKLNLPAQREVQWRFG-----TNTLIVSAQPGIPPIYYGA--YRGRCTLYENTTLQLDSLTDADTGQYTLSVINVDTGAQQ-QGSVNLTVH Xenopus_tropicalis_Ceacam316N Q---VEGIVGESVNLSIKLNLPAQLLVQWGFG-----TNIHIVTAFPDTTPQYFGA--YRGRCTLYGNTNLRLDNLTPIDTGEYTLTVTNMDTGAIQ-SGSVYLTVY Xenopus_tropicalis_Ceacam317N ENVT--GTEGKSVYLTVKLDLPAQQQVTWRVN-----SSTQIVTVYPGGSPIYTDS--YRDRCTLYGNTTLRLDNLTPTDTGEYSLSVTNPNSGATQ-SGSVYLTVY Xenopus_tropicalis_Ceacam318N1 QNVS--GIVGGSVTLTSTLNLPAQSTVTWMFG------TDRIAYAALSDPAIYDNS--CIGRCTLYGNTTLRLGSLTPADTGEYTLSVYNVLSGTQQ-TELFHLSVY Xenopus_tropicalis_Ceacam319N ENVV--GTVGKSVYLTVKLDLPAQRQVTWKFN-----SSIQIVIALPGGSPTYNGD--YRDRCTLYGNTTLRLDSLTPTDTGEYSLTVANMDTGAPQ-SGSVYLTVY Xenopus_tropicalis_Ceacam320N ENVN--GTVGKSVYLTVKLDLPAQRQVTWKVN-----SSSQIVTALPGGSPAYNGD--YRDRCTLYGNTTLRLDNLTPTDTGEYSLTVTNLDTVGPLLTGSVYLTVY Xenopus_tropicalis_Ceacam321N E----SGELGKSVNLTVKLNLPAQREVQWKFS-----TNTVIVSAPPGIPPTYYGA--YRGRCTLYENTTLQLDSLTDADTGQYTLSVINVDTGEQQ-QGSVNLTVH Xenopus_tropicalis_Ceacam350N QLIPQYPVVSQSVTLSVTGVTGTIRQFDWFKG-SSADTKNQIFSVIPPLNTV-TEGPQYFPRANWFPNGSLQISGLVPTDQGNYTVLIQTAESVTQA---TVSLPVY Xenopus_tropicalis_Ceacam351N QLIPQYPVVSQSVTLSVTGVTGTVIAFAWYKG-SSADTNNQIFIVIPSLNSV-TEGRQYFPRANWFPNGSLQISGLVPTDQGNYTVLIETAESRAQH---TVSLPVY Xenopus_tropicalis_Ceacam353P_N QLIPQYPVLNQSVTLSVTGVTGTIRKFTWYKG--SSTHDSQIFRVILSLDSV-TEGPQYFPHVSQFPNGSLQISGLVPTDQGTYRVLIQSGSITHLL---QVFVTVY Xenopus_tropicalis_Ceacam354N QLIPQYPVLNQSVTLSITGVTGTIRQFDWYKG-SSVDTNTQIFSVIPSANSV-TEGPQYFPRANWLPNGSLQISGLVPTDQGNYTVRIQTAESTVQA---TVSLPVY Xenopus_tropicalis_Ceacam355N EVIPKLPTPNSDVTLKVKGVSGIIRSFSWYNG-SNPSASNQILNYIPSLQPPQTKGHMYFPQAEGLPNGSLLIKDFVKKFEGVYTVQIQADSPLQA----SVSVTMS Xenopus_tropicalis_Ceacam356N QLIPQYPVVSQSVTLSVTGVTGTIRQFSWYKG-SSADTNNQIFSVIPSANSV-TKGPQYFPRANWLPNGSLQISGLVPTDQGNYTVLMYTAESTTQD---TVSLPVY Xenopus_tropicalis_Ceacam357N KLKPDCASVGKNVTLSVSGINGNITSFTWYLG--EPSASNQIINYAVSFTPPSAPGPKNFSDAIGLPNGSLLITNLKTEYSNTYTVQVQADTPGQA----SAELTVQ Xenopus_tropicalis_Ceacam358N QLIPDCASVGKNVTLSVSGINGNLNSFTWYLG--EPSASNQIINYIVSITPPSAPGPKNFSDAIGLPNGSLLITNLKTEYSNTYTVQVQASTPGQA----SAELTVE Xenopus_tropicalis_Ceacam359N QLIPSHPLVNKSVTLNVRGITGTLRYFRWYLG-SRIDAANQILHYNPNVNPPQLPGVQYFPRAHGLPNGSLHISDLAHTDQGMYTVMILTGGMERL----TVHLPVY Xenopus_tropicalis_Ceacam360N QAIPKYPVVNKPVTLSVSGVSGAIRSFSWYSS-SAIWNSSLILSYNPTSNPVETQGPKYFPRASSFSNGSLRISKLFTTDRGYYTVQIQAESSTQE----TINLPVY Xenopus_tropicalis_Ceacam361N QPIPEYPVVNQPVTLSVSGVSGAIRSFSWYKG-QFVDDSSLILAYNPTSYLVARRGPEYFPRASVLPDGSLKIFKIYTAVRRYYTVQIQAESLTQE----TINLPVY Xenopus_tropicalis_Ceacam362N QAIPKYPVVNQSVTLSVSGVSGAIRSFSWYKS-SSITNSSLILTYNSSSNPVETQGPQYFSRASGLSDGSLRISTLYTSDQTSYTVQVEASSLTKD----SIYLRVY Xenopus_tropicalis_Ceacam363N1 QPIPEYPVVNQPLTLSVSGVSGAIRSFSWYKS-SSIANSSLILTYNSSSNPVETHGPQYFSRASGLSDGSLRISTLYTSDQTSYTVQVEAGSLTKD----SIYLRVY Xenopus_tropicalis_Ceacam364N QLIPQYPVVNQSVTLSVTGVNGTIEKFTWYKV-LNAHDYNQILSVIPSLNTV-TKGPQYFSRASQFPNGSLQISGLVPADQGTYTVQIQTAENITWF---PVLLPVY Xenopus_tropicalis_Ceacam365N1 QLIPQYPVVNQSVTLRVTGVTGTIRQFTWYKG-SSTDSNNQIFSVIPSANSV-TKGPQYLPRASWFPNGSLQISGLVPTDQGNYTVQIQTENLTQV----TVLLRVN Xenopus_tropicalis_Ceacam366N QLIPKNPVVNQSVTLRVSGVSGAILSFSWYGGLSDDDNMFLILTYNLSSYPVEKRGPLYIPGARGLPDGSLKISKLSTAYRGIFTVGIQAESFPTKG---SIYLPVF Xenopus_tropicalis_Ceacam367N QLIPKYPVANQPVTLSVSGVSGAILSFSWYRS-SAIMNSSLILSYNPTLNPAETQGPQYFPRASSFSNGSLHIVELSTTDRGYYTVQVQAGSLTSQ----TIDLPVY Xenopus_tropicalis_Ceacam368N QLIPQYPVVNQSVTLSVTGVTGTIRQFSWYKG-SSTDTNNNIFNVIPSANSV-TPGAQYFLRANWFPNGSLQISGLVPTDQGNYTVLIVTAESVTQA---TVSLPVY Xenopus_tropicalis_Ceacam369N QLIPQYPVVNQSVTLSITGVTGTVSAFLWYKG-SSADTNNNIFSVIPSVNIV-SKGPQYFPRANWFPNGSLQISGLVPTDQGNYTVQIVTPGNAAQH---TVSLPVY Xenopus_tropicalis_Ceacam370N QLIPQYPVVSQSVTLSVTGVTGAIRQFTWYKG-SSTDTNNQIFSVIPSYSSV-TEGPQYFPRASQFPNGSLQISGLVPTDQGNYTVLIQTAGSRAQH---TVSLPVY Xenopus_tropicalis_Ceacam371N QLIPQYPVVSQSVTLSVTGVTGTIRQFDWYKG-SSTNTNTQIFTVIPSTNSV-TKGPQYFPRASQFPNGSLQISGLFLTDQGSYTVQIQTESTVQA----TVSLPVY Xenopus_tropicalis_Ceacam372N QLIPQYPVVSQSVTLSVTGVTGTIRKFTWYKG--SSTHGSQIFRVISSLDSV-TEGPQYFSHVSQFPNGSLQISGLVPSDQGTYRVQIQAGSITHLL---QVFVTVY Xenopus_tropicalis_Ceacam375N QLIPQYPVVSQSVTLSVTGVTGTIRQFTWYKG-SSADTNNQIFSVIPSANSV-TEGPQYFPRANWFPNGSLQISGLVPTDQGNYTVQLVTAESRAQH---TVSLPVY ; END; [ The following blocks are output data for analysis step 21320 ] BEGIN TREES; TITLE 'Xenopus tropicalis carcinoembryonic antigen-related cell adhesion molecule '; LINK TAXA = TaxaForAnalysisStep21320; TREE PAUP_1 = [&R] (((Xenopus_tropicalis_Ceacam314N:0.267949,(Xenopus_tropicalis_Ceacam309N:0.210248,Xenopus_tropicalis_Ceacam311N:0.327265):0.025093):0.413882,(Xenopus_tropicalis_Ceacam313N1:0.895386,((Xenopus_tropicalis_Ceacam304N:0.1566,Xenopus_tropicalis_Ceacam318N1:0.122349):0.715437,(Xenopus_tropicalis_Ceacam302N:0.391472,((Xenopus_tropicalis_Ceacam316N:0.273644,(Xenopus_tropicalis_Ceacam315N:0.025901,Xenopus_tropicalis_Ceacam321N:0.053172):0.283514):0.042343,(Xenopus_tropicalis_Ceacam307N:0.215557,(Xenopus_tropicalis_Ceacam303N:0.079323,((Xenopus_tropicalis_Ceacam308N:0.086081,Xenopus_tropicalis_Ceacam317N:0.107361):0.079555,(Xenopus_tropicalis_Ceacam319N:0.073321,Xenopus_tropicalis_Ceacam320N:0.10492):0.0):0.064537):0.011909):0.144023):0.00936):3.74444E-6):0.18791):0.019908):1.136835,((Xenopus_tropicalis_Ceacam355N:0.332964,(Xenopus_tropicalis_Ceacam357N:0.056344,Xenopus_tropicalis_Ceacam358N:0.029119):0.585654):0.321698,(((Xenopus_tropicalis_Ceacam361N:0.180575,Xenopus_tropicalis_Ceacam366N:0.395795):0.052562,((Xenopus_tropicalis_Ceacam360N:0.052485,Xenopus_tropicalis_Ceacam367N:0.166571):0.063427,(Xenopus_tropicalis_Ceacam362N:0.013857,Xenopus_tropicalis_Ceacam363N1:0.052234):0.194369):0.046044):0.263354,(Xenopus_tropicalis_Ceacam359N:0.564513,((Xenopus_tropicalis_Ceacam364N:0.245457,(Xenopus_tropicalis_Ceacam353P_N:0.035345,Xenopus_tropicalis_Ceacam372N:0.048971):0.235456):0.098407,((Xenopus_tropicalis_Ceacam365N1:0.09791,Xenopus_tropicalis_Ceacam371N:0.123117):0.0,(Xenopus_tropicalis_Ceacam370N:0.040597,((Xenopus_tropicalis_Ceacam375N:0.017627,(Xenopus_tropicalis_Ceacam351N:0.059854,Xenopus_tropicalis_Ceacam369N:0.145953):0.034208):0.00793,(Xenopus_tropicalis_Ceacam350N:0.059421,(Xenopus_tropicalis_Ceacam368N:0.085189,(Xenopus_tropicalis_Ceacam354N:0.078426,Xenopus_tropicalis_Ceacam356N:0.043059):0.017142):1.17663E-6):0.044189):0.035886):0.09299):6.39853E-6):0.201804):0.00669):4.18669E-6):1.136835); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr108560] END;