#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 04, 2024; 16:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Meeboon J., Divarangkoon R., & Takamatsu S. 2012. Two new species of Erysiphe sect.
Uncinula: Erysiphe fernandoae and E. michikoae. Mycoscience, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12270]

[ The following blocks are input data for analysis step 21680 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep21680;
        DIMENSIONS NTAX=10;
        TAXLABELS
            'Erysiphe aphananthes ex_Aphananthe_aspera_MUMH4648'
            'Erysiphe bivonae ex_Ulmus_AB475115'
            'Erysiphe bivonae ex_Ulmus_AB475116'
            'Erysiphe kenjiana ex_Ulmus_glable_AB475117'
            'Erysiphe kenjiana ex_Ulmus_minor_AB475118'
            'Erysiphe kenjiana ex_Ulmus_pumila_AB475119'
            'Erysiphe kusanoi ex_Celtis_AB475120'
            'Erysiphe michikoae ex_Celtis_jessoensis_MUMH5055'
            'Erysiphe mori ex_Morus_AB000946'
            'Erysiphe zelkowae ex_Zelkova_AB475121'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M42758]

	TITLE Erysiphe_michikoae_ITS;
	LINK TAXA = TaxaForAnalysisStep21680;
	DIMENSIONS NCHAR=555;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                              10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550     ]
[                                                               .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
'Erysiphe aphananthes ex_Aphananthe_aspera_MUMH4648'   CAGAGCGTG--AGGTCCAGCCATGGCAGTTGT-CGTGGGCTGGATCGACCCTC--CACCCGTGTCGACTTATA-ATTTTGTTGCTTTGGCGGGCCGGGCTCGCGCATGGT--CGCCTTTC---------------GAGCGTGTATGGCGT-GCTGTCCACCGGCTTCGGCTGGAGCGTGTCCGCCAGAGACCTTATAACCAAAACCTATTGTTGT--CCTTGTAGTCTAAGGCAAGATTTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTTGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGTGTTGGGGCTCGCCACA-TCGGCGGCCCTTAAAGACAGTGGCGGTGCCGACGTCGGCTCTACGCGTAGTAAAATAGCTCGCGACAGAACGGCGAT-GGTGACTAGCC
'Erysiphe bivonae ex_Ulmus_AB475115'                   CAGAGCGTG--AAGTCCAGCCATGGCAGTTGT-CGTGCGCTGGACCGACCCTC--CACCCGTGTCGACTTGTA-TTTATGTTGCTTTGGCGGACCGGGCTCGCCCATGGT--CGCGTTTCGTAC-----------GTGTGCGTATGGCGT-GCTGCCCACCGGCTTCGGCTGGAGCGTGTCCGCCGGAGACCTTATAACCAAAACCTATTGCTGT--CCCTGTAGTCTAAGGCAAGATTTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTACTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGCGTTGGGGCTCGCCACA-TCGGCGGCTCTTAAAGACAGTGGCGGTGCCGACGTCGGCTCTACGCGTAGTAAAATAGCTCGCGACAGAACGGCGAT-GGCGACTAGCC
'Erysiphe bivonae ex_Ulmus_AB475116'                   -----------------------------------------------------------------------------------CTTTGGCGGACCGGGCTCGCCCATGGT--CGCGTTTCGTACGTGTGCGTATGGTGTGCGTATGGTGT-GCTGCCCGCCGGCTTCGGCTGGAGCGTGTCCGCCGGAGACCTTATAACCAAAACCTATTGCCGT--CCCTGTAGTCTAAGGCAAGATTTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGCGTTGGGGCTCG---CA-TCATCGGCCCTTAAAGACAGTGGCGGTGCCGACGTCGGCTCTACGCGTAGTAAGATAGCTCGCGACAGAACGGCGAT-GGCGACTAGCC
'Erysiphe kenjiana ex_Ulmus_glable_AB475117'           -------------------CCATGGCAGTTGT-CGTGGGCTGGACCGACCCTC--CACCCGTGTCGACTTGTA-TTTTTGTTGCTTTGGCGGACCGGGCTCGCCCATGGT--CGCGTTTCGTAC-----------GTGTGCGTATGGCGT-GCTGCCCACCGGCTTCGGCTGGAGCGTGTCCGCCGGAGACCTTATAACCAAAACCTATTGCCGT--CCCTGTAGTCTAAGGCAAGATTTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGTGTTGGGGCTCGCCACA-TCGGCGGCTCTTAAAGACAGTGGCGGTGCCGACGTCGGCTCTACGCGTAGTAAAATAGCTCGCGACAGAACGGCGAT-GGCGACTAGCC
'Erysiphe kenjiana ex_Ulmus_minor_AB475118'            CAGAGCGTG--AAGTCCAGCCATGGCAGTTGT-CGTGGGCTGGACCGACCCTC--CACCCGTGTCGACTTGTA-TTTTTGTTGCTTTGGCGGACCGGGCTCGCCCATGGT--CGCGTTTCGTAC-----------GTGTGCGTATGGCGT-GCTGCCCACCGGCTTCGGCTGGAGCGTGTCCGCCGGAGACCTTATAACCAAAACCTATTGCCGT--CCCTGTAGTCTAAGGCAAGATTTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGTGTTGGGGCTCGCCACA-TCGGCGGCTCTTAAAGACAGTGGCGGTGCCGACGTCGGCTCTACGCGTAGTAAAATAGCTCGCGACAGAACGGCGAT-GGCGACTAGCC
'Erysiphe kenjiana ex_Ulmus_pumila_AB475119'           CAGAGCGTG--AAGTCCAGCCATGGCAGTTGT-CGTGGGCTGGACCGACCCTC--CACCCGTGTCGACTTGTA-TTTTTGTTGCTTTGGCGGACCGGGCTCGCCCATGGT--CGCGTTTCGTAC-----------GTGTGCGTATGGCGT-GCTGCCCACCGGCTTCGGCTGGAGCGTGTCCGCCGGAGACCTTATAACCAAAACCTATTGCCGT--CCCTGTAGTCTAAGGCAAGATTTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGTGTTGGGGCTCGCCACA-TCGGCGGCTCTTAAAGACAGTGGCGGTGCCGACGTCGGCTCTACGCGTAGTAAAATAGCTCGCGACAGAACGGCGAT-GGCGACTAGCC
'Erysiphe kusanoi ex_Celtis_AB475120'                  CAGAGCGTG--AGGTCCAGCCATGGCAGTTGTCCGTGGGCTGGATC-ACCCTC--CACCCGTGTCGACTTGTA-TTTGTGTTGCTTTGGCGGGCCGGGCTCGCCCATGGTCGCGCGTTTCGTAC-----------GTGTGCGTATGGCGT-GTTGCCCACCGGCTTCGGCTGGAGCGTGTCCGCCGGAGACCCTATAACCAAAACCTATTGCTGT--CCATGTAGTCTAAGGCAAGATTTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCGCCTCGAGCTACCCTTTTGGTGTGGCTGCGGTGTTGGGGCTCGCCGCA-TCGGCGGCCCTTAAAGACAGTGGCGGTGCCGACGTTGGCTCTACGCGTAGTAAAATAGCTCGCGACAGAACGGCGCT-GGCGACTAGCC
'Erysiphe michikoae ex_Celtis_jessoensis_MUMH5055'     CAGAGCGTG--AGGTCCAGCCATGGCAGTTGT-CGTGGGCTGGATCGACCCTC--CACCCGTGTCGACTTGTA-TTTTTGTTGCTTTGGCGGGCCGGGCTCGCCCATGGT--CGCGTTTCGTAC-----------GTGTGCGTATGGCGT-GTTGCCCACCGGCTTCGGCTGGAGCGTGTCCGCCGGAGACTCTATAACCAAAACCTATTGCTGT--CCATGTAGTCTAAGGCAAGA-TTTAAAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGTGTTGGGGCTCGCCGCA-TCGGCGGCCCTTAAAGACAGTGGCGGTGCCGACGTTGGCTCTACGCGTAGTAAAATAGCTCGCGACAGAACGGCGCT-GGCGACTAGCC
'Erysiphe mori ex_Morus_AB000946'                      CAGAGCGTG--AGGTCCAGCCGTGGCAGTTGT-CGCGCGCTGGATCGACCCTCCACACCCGTGTCGACTTGTATTTTTTGTTGCTTTGGCGGGCCGGGCTCGCCCATGTT--CGCTT----------------------GAGCATGGCGT-GCTGCCCACCGGCTTCGGCTGGAGCGCGTCCGCCAGAGACCTTACACCCAAA--CTCATGTTGTCCCCCTGTAGTCTAAGATAAGATTTT--AGAATGGAATAAAACTTTCAACAACGGATCTCTTGGCTCTGGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCATTCT-GTGTGGCTGCGGTGTTGGGGCTCGCCGCATTTGGCGGCCCTTAAAGACAGTGGCGGTACCGGCGCCGGCTCTACGCGTAGTAAAAGA-CTCGCGACAGAGTGGCGATGGGCGACTAGCC
'Erysiphe zelkowae ex_Zelkova_AB475121'                CAGAGCGTGTAAGGTCCAGCCATGGCAGTTGT-CGTGGACTGGATCGACCCTC--CACCCGTGTCGACTTGTA-TTTTTGTTGCTTTGGCGGGCCGGGCTCGCGCATGGT--CGCGTTTCGTAC-----------GTGTGCGTATGGCGTAGTTGCCCACCGGCTACGGCTGGAGCGTGTCCGCCGAAGACCCTACAACCAAAACCTATTGTTGT--CCTTGTAGTCTAAGGCAAGA-TTTACAGAATTG-ATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCTCGAGCTACCCTTTTGGTGTGGCTGCGGTGTTGGGGCTCGCCGCA-TCGGCGGCCCTTAAAGATAGTGGCGGTGCCAACGTTGGCTCTACGCGTAGTAGAATAGCTCGCGACAGAACGGCGCT-GGCGACCAGCC
;
END;

[ The following blocks are output data for analysis step 21680 ]
BEGIN TREES;
      TITLE Erysiphe_michikoae_ITS;
      LINK TAXA = TaxaForAnalysisStep21680;
      TREE MajRule = [&R] ('Erysiphe mori ex_Morus_AB000946':0.032737,('Erysiphe aphananthes ex_Aphananthe_aspera_MUMH4648':0.026367,('Erysiphe zelkowae ex_Zelkova_AB475121':0.023411,('Erysiphe michikoae ex_Celtis_jessoensis_MUMH5055':0.001891,'Erysiphe kusanoi ex_Celtis_AB475120':0.003877):0.001267):0.010606,('Erysiphe bivonae ex_Ulmus_AB475115':0.009739,'Erysiphe bivonae ex_Ulmus_AB475116':0.016264,'Erysiphe kenjiana ex_Ulmus_glable_AB475117':0.0,'Erysiphe kenjiana ex_Ulmus_minor_AB475118':0.0,'Erysiphe kenjiana ex_Ulmus_pumila_AB475119':0.0):0.011246):0.032737);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr107152]


END;