#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 04, 2024; 6:51 GMT

TreeBASE (cc) 1994-2008

Study reference:
Meeboon J., Divarangkoon R., & Takamatsu S. 2012. Two new species of Erysiphe sect.
Uncinula: Erysiphe fernandoae and E. michikoae. Mycoscience, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12270]

[ The following blocks are input data for analysis step 21681 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep21681;
        DIMENSIONS NTAX=10;
        TAXLABELS
            'Erysiphe carpi-laxiflorae ex_Carpinus_AB252470'
            'Erysiphe carpi-laxiflorae ex_Carpinus_AB252471'
            'Erysiphe carpi-laxiflorae ex_Carpinus_AB252472'
            'Erysiphe carpinicola ex_Carpinus_AB252467'
            'Erysiphe carpinicola ex_Carpinus_AB252468'
            'Erysiphe carpinicola ex_Carpinus_AB252469'
            'Erysiphe japonica ex_Swida_AB000941'
            'Erysiphe pseudocarpinicola ex_Carpinus_AB252464'
            Erysiphe_sp._ex_Fernandoa_MUMH5081
            'Erysiphe togashiana ex_Styrax_AB091775'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M42759]

	TITLE Erysiphe_fernandoae_ITS;
	LINK TAXA = TaxaForAnalysisStep21681;
	DIMENSIONS NCHAR=550;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                           10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550]
[                                                            .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
'Erysiphe carpi-laxiflorae ex_Carpinus_AB252470'    CAGAGCGTGAGGCCCAGT-CGTAGCACCTGCTGCGGTCGGGGCCGACCCTCCCACCCGTGTCGACTTCTATCATGTTGCTTTGGCGGACCGGA---CGCGTGGCCGAGTCGTATCGCGCGACAAGGTGTCTGCTCCCTCGGCTTTCGTTATGAGAGCTGGGTCGCGTCCGCCAGAGACCCCCTC---AAAATACGTATGTTGTCCCTGTAGTCTAAAGTTTAAATAAAGTAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTCCCACTTT-GGTGGTGTGGCTTCGGTGTTGGAGCTGCGCCAGTTGCTGGCGGCTCTGAAAGGCAGTGGCGGTCCCAGCTTCGGCTCTACGCGTAGTAC-TTTG-TTCTCGCGACAGGGTGAGGCT-GACGACTTGCC
'Erysiphe carpi-laxiflorae ex_Carpinus_AB252471'    CAGAGCGTGAGGCCCAGT-CGTAGCACCTGCTGCGGTCGGGGCCGACCCTCCCACCCGTGTCGACTTCTATCATGTTGCTTTGGCGGACCGGA---CGCGTGGCCGAGTCGTATCGCGCGACAAGGTGTCTGCTCCCTCGGCTTTCGTTATGAGAGCTGGGTCGCGTCCGCCAGAGACCCCCTC---AAAATACGTATGTTGTCCCTGTAGTCTAAAGTTTAAATAAAGTAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTCCCACTTT-GGTGGTGTGGCTTCGGTGTTGGAGCTGCGCCAGTTGCTGGCGGCTCTGAAAGGCAGTGGCGGTCCCAGCTTCGGCTCTACGCGTAGTAC-TTTG-TTCTCGCGACAGGGTGAGGCT-GACGACTTGCC
'Erysiphe carpi-laxiflorae ex_Carpinus_AB252472'    CAGAGCGTGAGGCCCAGT-CGTAGCACCTGCTGCGGTCGGGGCCGACCCTCCCACCCGTGTCGACTTCTATCATGTTGCTTTGGCGGACCGGA---CGCGTGGCCGAGTCGTATCGCGCGACAAGGTGTCTGCTCCCCCGGCTTTCGTTATGAGAGCTGGGTCGCGTCCGCCAGAGACCCCCTC---AAAATACGTATGTTGTCCCTGTAGTCTAAAGTTTAAATAAAGTAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTCCCACTTT-GGTGGTGTGGCTTCGGTGTTGGAGCTGCGCCAGTTGCTGGCGGCTCTGAAAGGCAGTGGCGGTCCCAGCTTCGGCTCTACGCGTAGTAC-TTTG-TTCTCGCGACAGGGTGAGGCT-GACGACTTGCC
'Erysiphe carpinicola ex_Carpinus_AB252467'         CAGAGCGTGAGGCTCAGG-CGTGGCACCTGCCGCGATCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA---CGCGT---------------------------CGCGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGCGTCCGCCAGAGACCGTATC---AAAACACGTATGTTGTTCCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCCTCGAGCCCCCATTTCTGATGGTGTGGTTCCGGCGTTGGAGTGCGTCCCCGCG-GGGCGCCTCTGAAAACCAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-AATACTCCCCGCGACAGAGAGACGACCGGCGACTTGCC
'Erysiphe carpinicola ex_Carpinus_AB252468'         CAGAGCGTGAGGCTCAGG-CGTGGCACCTGCCGCGATCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA---CGCGT---------------------------CGCGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGCGTCCGCCAGAGACCGTATC---AAAACACGTATGTTGTTCCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCCTCGAGCCCCCATTTCTGATGGTGTGGTTCCGG?GTTGGAGTGCGTCCCCGCG-GGGCGCCTCTGAAAACCAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-AATACTCCCCGCGACAGAGAGACGACCGGCGACTTGCC
'Erysiphe carpinicola ex_Carpinus_AB252469'         CAGAGCGTGAGGCTCAGG-CGTGGCACCTGCCGCGATCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA---CGCGT---------------------------CGCGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGCGTCCGCCAGAGACCGTATC---AAAACACGTATGTTGTTCCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCCTCGAGCCCCCATTTCTGATGGTGTGGTTCCGG?GTTGGAGTGCGTCCCCGCG-GGGCGCCTCTGAAAACCAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-AATACTCCCCGCGACAGAGAGACGACCGGCGACTTGCC
'Erysiphe japonica ex_Swida_AB000941'               CAGAGCGTGAGGCTCAGT-CGTGGCATTTGCCGCGTGCTGGGCCGACCCTCCCACCCGTGTCGATTTATATCTTGTTGCTTTGGCGGGCCGGG-------CTGCGCCGACGCTGT-CCGCAAGGAAAGATGCGTCGGTCGCCCCCGCCGGCTTCGGCTGGAGCGCGTCCGCCAAAGACCCAACCAA-AAAAAACTCATGTTATCATTGCAGTCT-AAGTCTTTATTATTG-AATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAAACACCCCC-TCCAGCTGCC-------TTTGCGTGGCTGCGGTGTTGGGGCACGTCGCGGTG-CGACGGCCCTGAAAGACAGTGGCGGTCCCGGCGTGGGCTCTACGCGTAGTAACCTTGCTTCTCGCGACAGAGTGACGACGGTTGGCTTGCC
'Erysiphe pseudocarpinicola ex_Carpinus_AB252464'   CAGAGCGTGATGCTCAGGCCGTAGCATCTGCTGCGGGCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA-------------------------------CGCATCTGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGTGTCCGCCAGAGGATGTAAC---AAAACACGTATGTCGTACCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACACCCCCCCTCGAGCCCCCATTTCTGGTGGTGTGGTTCCGGTGTTGGAGTGCGTCACGCTG-TGGCGCCTCTGAAAGACAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-ATTACTTCCCGCGACAGA?AGACGGACGGCGACTTGCC
Erysiphe_sp._ex_Fernandoa_MUMH5081                  --------GAGGCTCAGG-CGTGGCGTCAGCTGCGGCCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCGTGTTGCTTTGGCGGCCCGGACGCGCGAGGCCTGTCGGTCCATCTCGACAGGTGGTTGTGCTCCCCTGGCTCTCGCGATGAGGGCTGGGTCGTGACCGCCAGAGACCCCCCTC--AAAATACGTATGTTGTTCCTGTAGTCTAAAGTTTAATGAAGC-AAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCC-TCGAGCCGCCC--GTTTATGGTGTGGCTTTGGTGTTGGAGTGCGTCGCGCGT-CGACGGCTCTGAAAAACAGTGGCGGTCTCGGCGTGAGCTCTACGCGTAGTAC-TTTACTCCTCGCGACAGAGAGACGACGGTGACTTTGCC
'Erysiphe togashiana ex_Styrax_AB091775'            CAGAGTGCGAGGCTCAGG-CGTGGCATCAGCTGCGGTCTGGG?CGACCCTCCCACCCGTGTCGACTTCTATCGTGTTGCTTTGGCGGCCCGGA--CGCGAGCCCTGTCGGTTTATGTCGACGGG-CATTGTGCTCCCCCGGCTCTCGTGATGAGGGCTAGGTCGCGGCCGCCAGAGACCCCCCCCTAAAAATACGCATGTTGTTCCTGTAGTCT??AG?TTATTGAATC-AAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACACCCCCC-TCGAGCTGCCC--GGTTGTGGTGTGGCTCCGGTGTCGGAGTGCGTCGCGTGT-CGGCGGCTCTGAAAGACAGTGGCGGTCTCGGCGTGAGCTCTACGCGTAGTAC-TTTACTTCTCGCGACAGAGAGACGACGGTGACTTTGTC
;
END;

[ The following blocks are output data for analysis step 21681 ]
BEGIN TREES;
      TITLE Erysiphe_fernandoae_ITS;
      LINK TAXA = TaxaForAnalysisStep21681;
      TREE MajRule = [&R] ('Erysiphe japonica ex_Swida_AB000941':0.194282,(('Erysiphe carpi-laxiflorae ex_Carpinus_AB252470':0.0,'Erysiphe carpi-laxiflorae ex_Carpinus_AB252471':0.0,'Erysiphe carpi-laxiflorae ex_Carpinus_AB252472':0.001889):0.167589,((Erysiphe_sp._ex_Fernandoa_MUMH5081:0.031248,'Erysiphe togashiana ex_Styrax_AB091775':0.036365):0.148175,('Erysiphe pseudocarpinicola ex_Carpinus_AB252464':0.043027,('Erysiphe carpinicola ex_Carpinus_AB252467':0.0,'Erysiphe carpinicola ex_Carpinus_AB252468':0.0,'Erysiphe carpinicola ex_Carpinus_AB252469':0.0):0.041306):0.035163):0.006842):0.194282);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr107153]


END;