#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 13:52 GMT TreeBASE (cc) 1994-2008 Study reference: Forest F., Savolainen V., Chase M., Lupia R., Bruneau A., & Crane P. 2004. Multiple calibration points, paleobotanical confidence intervals and the estimation of divergence times: A case study from the birch family (Betulaceae). Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1208] [ The following blocks are input data for analysis step 2182 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2182; DIMENSIONS NTAX=27; TAXLABELS Alnus_acuminata Alnus_cremastogyne Alnus_incana_rugosa Alnus_maritima Alnus_nitida Alnus_viridis_crispa Betula_alnoides Betula_humilis Betula_insignis Betula_nigra Betula_pendula Betula_populifolia Betula_pumila Carpinus_betulus Carpinus_caroliniana_virginiana Carpinus_cordata Carpinus_fangiana Carpinus_japonica Corylus_americana Corylus_colurna Corylus_cornuta_cornuta Corylus_ferox Corylus_maxima Ostry_japonica Ostrya_virginiana Ostryopsis_davidiana Ticodendron_incognitum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2549] TITLE Forestetal_Betulaceae; LINK TAXA = TaxaForAnalysisStep2182; DIMENSIONS NCHAR=759; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Alnus_acuminata TCGTTTTACTTTTTTTTT-GCCTTATTATTG-----------GCACGCGGTGGCC-ACCTAGCGGAGCTGGGTGAGCACATTTT-CGGGCTCAAAATCCATCGTT-TTGACCTCC-AGGCACGCCGTTTCCATCCGTACTC--TATACTGAAAGC-GTTTTT--AAGGAGT-TTTCGATT----GGGTG------GCACGTGGACACGTCTGAGCA----CCGG-ATC-CCATCACTATGCGGGTCAGTTCGGTTAGACGAGTGAGGCTTATAAGTTTTTTGCGTAACTCTACTAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACCTGTCACAACAACTGGGGGCGGGGGGGATCTCGCGCCCCGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCCTGCCGAACAACGTACCCC-GGCGCGG-TC-CGCGCCAAGGAACATGAACGAAAGAGTGCCTCCGGTCGCCTCGGAAACGCT-GCGCG-CACC-GGGGGCGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCCAGCCCATCGCCCTGCAAAGAGGCGGTGGGGGCATGCGGGGCGGACATTGGCCTCCCGTGGGCTGATGCCTGCGGCTGGCCTAAAAACGAGTCCTCGGC-GACGATCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGACCCGTCGTGCGCGC---ATCGCCGCTCAACGCGTGCT-CTTCTGACCCTG-TCGCGTCGCGCTCGCGACGCTTCCAACGCGA Alnus_cremastogyne TCGTTTTACTTTTTTTTTTGCTTTATTATT------------GCACGCGGTGGTC-ACCTAGCGGAGCTGGGTGAGCACATTTTTCGGGCTCAAAATCCATCGTT-TGGACCTCC-AGGCACGCCGTTTCCATCCGTGCTC--TATACTGAAAGC-CCTTTT--AAGGAGT-TTTCGATT----GGGTG------GCACGTGGACACGTCCGAGCA----CCGG-ATC-CCATCACTATGCGGGCCAGTTCAGCTAGACGAGTGAGGCTTATAAGTTTTTTGCGTAACTCTACTAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACCTGTCACAACAACTGGGGGCGGGGGGGATCTC-------------GACCGGCAGGG-AGACACTCGTGC{CT}TTCCTGCCGAACAACGTACCCC-GGCGCGG-TC-CGCGCCAAGGAACATGAACGAAAGAGTGCCTCCGGTCGCCTCGGAAACGCT-GCGCG-CACC-GGAGGCGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCGCCCTGCAAAGAGGCGGTGGGGGCACGCGGGGCGGACATTGGCCTCCCGTGGGCTGATGCCTGCGGCTGGCCTAAAAACGAGTCCTCGGC-GACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGACCCGTCGTGCGCGC---ATCGTCGCTCAACGCGTGCT-CTTTTGACCCTG-TCGCGTCGCGCTCGCGACGCTTCCAACGCGA Alnus_incana_rugosa TCATTTTACTTTTTTTTT-GCCTTACTATT----------------------------------------------------------------------------------------------------------TACTC--TATACTGAAAGC-GTTTTT--AAGGAGT-TTTCG-TT----GGGTG------GCACGTGGACACGTCTGAGCA----CCGG-ATC-CCATCACTATGCGGGCCAGTTCAGTTAGACGAGTGAGGCTTATAAGTTTTTTGCGTAACTCTACTAAC---AAACCTGCCCAGCAGAACGACCCG-CGAACCTGTCACAACAACTGGGGGCGGGGGGGATCTCGCGCCC-GCCCTCGAACGGCAGGA-AGACACTCGTGCCTTCCTGCCGAACAACGTACCCC-GGCGCGG-TC-TGCGCCAAGGAACATGAACGAAAGAGTGCCTCCGGTCGCCTCGGAAACCGT-GCGCG-CACC-GGAGGCGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCGCCCTGCAAAGAGGCGGTGGGGGCATGCGGGGCGGACATTGGCCTCCCGTGGGCTGATGCCTGCGGCTGGCCTAAAAACGAGTCCTCGGC-GACGATCGCCACGACAATCGGTGGTTGACAAA-CCTTCGTGACCCGTCGTGCGCGC---ATCGCCGCTCAACGCGTGCT-CTTTTGACCCTG-TCGCGTCGCGCTCGCGACG-TTCCAACGCGA Alnus_maritima TCGTTTTACTCTTTTTTT-GCTTTATTATT------------GCACGCGGTGGTC-ACCTAGCGGAGCTGGGTGAGCACATTTTTCGGGCTCAAAATCCATCGTT-TTGACCTCC-AGGAACGCCGTTTCCATCCGTGCTC--TGTACTGAAAGC-GTTTTT--AAGGAGT-TTTCGATT----GGGTG------GCACGTGGACACGTCTGAGCA----CCGG-ATC-CCATCACTATGCGGGCCAGTTCAGCTGGACGAGTGAGGCTTATAAGTTTTTTGCGTAACTATACTAAC-----------CCAGCAGAACAACCCG-TGAACTTGTCACAACAACTGGAGGCGGGGGGGATTCGTACCCCCGCCCTCGAACAGTAGGG-AGACACTTGTGCCTTCTTGCCGAACAACGTACCTC-AACGCAG-TC-TGCGCCAAGGAACATGAACGAAAGAGTGCCTCCGGTCGCCTCGGAAACGCT-GCGCG-CACC-GGAGGCGA-ATCTTGTCTAGA-ACCAA?AGTTGCCCCCAACCCCATTGCCCTGCAAAGAGATGATGGGGGCATGTGGGGTAGACATTGGCCTCCCGTGGGCTTATGCTTGGGACTGGCCTAAAAATAATTCCTCGGC-GACGATCGCCACGCCAACCGGTGGTTGAGAAA-CCCTCGT-TATTGTTGTGCTTGC---ATCTTCAGTAATCGTGTGCTTCTTTTGACCCTG-TCGTGTCTTGCTCGTGATGCTTCCAACATGA Alnus_nitida TCGTTTTACTTTTTTTA-----TTATTATTA-----------GCACGCGGTGGCC-ACCTAGCGGAGCTGGGTGAGCACATTTTTCGGGCTCAAAATCCATCGTT-TTGACCTCC-AGGCACGCCGTTTCCGTCCGTGCTC--TATAGTGAGAGC-ATTTTT--AAGGAGT-TTTCGATT----GGGTG------GCACGTGGACACGTCTGAGCA----CCGG-ATC-CCATCACTATGCGGGCAAGTTCAGTTAGACGAGTGAGGCTTATAGGTTTTTTGCGTAACTCTACTAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACCTGTCACAACAACTGGGGGCGGGGGGGATCTCGCGCCCCGCCCTCGAACGGCAGGG-AGACAC{CT}CGTGCCTTCCCGCCGAACAACGTACCCC-GGCGCGG-TC-{CT}GCGCCAAGGAACATGAACGAAAGAGTGCCTCCGGTCGCCTCGGAAACGCT-GCGCG-{AC}ACC-GGAGGCGA-ATCTTGTCTAGA-ACCGATCGTTGC{CT}CCCAACCCC{AG}TCGCCCTGCAAAGAGGCGGCGGGGGCACGCGGGGCGGACATTGGCCTCCCGTGGGCTGATGCCTGCGGCTGGCCTAAAAACGAGTCCTCGGC-GACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGACCCGTCGTGCGCGC---ATCGTCGCTCAACGCGTGCT-CTTTCGACCC{CT}G-TCGCGTCGCGCTCGCGACGCTTCC{AG}ACGCGA Alnus_viridis_crispa TCGTTTTACTTTTTTTTTT-CTTTTTCTTTT-----------GCACGCGGTGGTC-ACCTAGCGGAGCTGGGTGAGCAGATTTC-CGGGGTCAAAATCCATCGTT-TTGACCTCC-AGGTACGCTGTTTTCATCCGCACTC--TATACCGAAAGC-GTTTTT--AAGGAGTA-TTCGATT----GGGTA------GCACATGGACACGTCTGAGCA----CCGG-ATC-CCATCAATATGCGGGCAATTTCAGTTAGACGAGTGAGGCTTATAAGTTTTTTGCGTGACTCTACTAAC-----------------GAAGCACCCG-CGAAC-TGTCACAACAACTGGGGGC--GGGGGATCTCGCACCCCGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCCTGCCGAACAACGTACCCC-GGCGCGG-TC-TGCGCCAAGGAACATTAACGAAAGAGTGCCTCCGGTAGCCTCGGAAACGCT-GTGCT-TGCC-GGAGGCGA-ATCTTGTCTA-------ATCGTTGCCCCCAACCCCATCGCCCTGCAAAGAGGCGGTGGGGGCATGCGGGGCGGACATTGGCCTCCCGTGGGCTGATGCCTGCGGCTGGCCTAAAAACGAGTCCTCGGCCGACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGT-------CGTGCGTGC---ATCGTCGCTCAATGTGTGCT-CTTTTGACCCTG-TCGCGTCGC--TCGCGA-------------- Betula_alnoides CCGTTTTGCTTTTTTTTT-GCTTTTTGGTCCGCTCCGGTTTCGCACGCCGTGGCCCACCTAGCGGAGCTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT--TTACTTCC-AAATACCTAGTTTTTATCGGTACTG--CACA-AGAAAATTGTTTTTATATGGAAT-TTCA-ATTGTCGGGGCCCGTGA-GCACGAGGACACGTTTGAGCA----CCGG-ATC-CCATCACTATGCCGATGAGTTCAGTTGGACGCGTGAGGCATATAAGGTTTTTGCGCAACCATACCAACTCGAAACCTGCCCAGCAGAACGACCCG-TGAACCTGTTGAAACAACTGGGGGTGGGGGGGATCTCGCCCCTTGCCCCCGAACGGTAGGG-AGACACTTGTGCATCCCTGCCGAACAACGAACCCC-GGCGCGG-TC-{CT}GCGCCAAGGAACTTTAACGAAAGAGTGCCTCCGGCCGCCTCGGAAACGGT-GTGCG-TGCG-GGAGGTGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCTCCTTG{CT}AAAGGGACGA-GGGGGCCTGTGGGGCAGAAATTGGCCTCCCGTGAGCTCATGCATGCGGTTGGCCTAAAAGCGAGTCCTCGGC-GACGCGCGCCACGACAATCGGTGGTTGTCAAA-CCCTCGTGTCCCGTCGTGCGTG{AC}---CGCGTCGCTCATCGTGTGCT-C-CTTGACCCTG-CTGTGTCGCGCTAGCGACGCTTCCAACGCGA Betula_humilis CCGTTTTGCTTTTTTTTT-GCTTTTTGGTCCGCTCCGGTTTCGCACGCCGTGGCCCACCTAGCGGAGCTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-TCTACTTCC-AAATACCTAGTTTTTATCAGTACTG--CACA-TGAGAACCGTTTTTAAATGGAAT-TTTA-ATTGTCGGGGCCCGTGA-GCACGAGGACACGTTTGAGCA----CCGG-ATC-CCATCAGAATGCGGATGAGTTCAGTTGGACGCGTGAGGCATATAAGGTTTTTGCGTAACCACACCAACTCGAAACCTGCCCAGCAGAACGACCCG-TGAACCTGTTGAAACAACTGGGGGTGGGGGGGATCTCGCCCCTTGCCCCCGAACGGTAGGG-AGACACTCGTGCATCCCTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTTAACGAAAGAGTGCCTCCGGCCGCCTCGGAAACGGT-GTGCG-TGCG-GGAGGTGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCTCCTTGCAAAGGGACGA-GGGGGCCTGTGGGGCAGAAATTGGCCTCCCGTGAGCTCATGCATGCGGTTGGCCTAAAAGCGAGTCCTCGGC-GACGCGCGCCACGACAATCGGTGGTTGTCAAA-CCCTCGTGTCCCGTCGTGCGTGC---CGCGTCGCTCATCGTGTGCT-C-CTTGACCCTG-CTGTGTCGCGCTAGCGACGCTTCCAACGCGA Betula_insignis CCGTTTTGCGTTTTTTTT-GCTTTTTGGTCCGCTCCGGTTTCGCACGCCGTGGCCCACCTAGCGGAGCTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-TTTACTTCC-AAATACCTAGTTTTTATCGGTACTG--CACA-AGAAAATTGTTTTTAAATGGAAT-TTTA-ATTGTCGGGGCCCGTGA-GCACGAGGACACGTTTGAGCA----CTC--AAC-TCATCACTATGCGGATGAGTTGAGTTGGACGCGTGAGGCATATAAGGTTTTTGCGTAACCATACCAACTCGAAACCTGCCCAGCAGAACGACCCG-TGAACATGTTGAAACAACTGGGGGCGGGGGGGATCTCGCCCCGTGCCCCCGAACGGTAGGG-AGACACTCGTGCATCCCTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTTAACGAAAGAGTGCCTCCGGCCGCCTCGGAAACGGT-GTGCG-TGCG-GGAGGTGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCTCCTTGCAAAGGGACGA-GGG-GCTTGTGGGGCAGAAATTGGCCTCCCGTGAGCTTACGCATGCGGTTGGCCTAAAAGCGAGTCCTCGGC-GACGCGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGTCCCGTCGTGCGTGC---CGCGTCGCTCATCGTGTGCT-C-TTTGACCCTG-CTGCGTCGCGCTAGCGACGCTTCCAACGCGA Betula_nigra CCGTTTTACTTTTTTTTT-GCTTTTTGGTCCGCTCCGGTTTCGCACGACGTGGCCCACCTAGCGGAGCTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-TCTCCTTCC-AAATACCTAGTTTTTATCAGTACTG--CGCA-TGAAAACTGTTTTTAAATGGAAT-TTTA-ATTTTCGGGGCCCGTGA-ACGCGAGGACACGTTTGAGCA----CCGG-ATC-CCATCACTATGCGGATGAGTTGAGTTGGACGCGTGAGGCATATAAGGTTTTTGCGTAACCATACCAACTCGAAACCTGCCCAGCAGAACGACCCG-TGAACCTGTTGAAACAACTGGGGGTGGGGGGGATCTCGCCCCGTGCCTCCGAACGGTAGGG-AGACACTTGTGCATCCCTGCTGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTTAACGAAAGAGTGCCTCCGGCCGCCTCGGAAACGGT-GTGCG-TGCA-GGAAAACA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCTCCTTGCAAAGGGACGA-GAGGGCCAGTGGGGTAGAAATTGGCCTCCCGTGAGCTCATGCATGCGGTTGGCCTAAAAGCGAGTCCTCGGC-GACGCGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGTCCCGTCGTGCGTGC---CGCGTTGCTCATCGTGTGCT-C-TTTGACCCTG-TTGTGTCGCGCTAGCGATGCTTCCAATGCGA Betula_pendula CCGTTTTGCTTTTT-----------------GCTCCGGTTTCGCACGCCGTGGCCCACCTAGCGGAGCTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-TCTACTTCC-AAATACCTAGTTTTTATCA-------------TGAAAACTGTTTTTAAATGGAAT-TTTA-ATTGTCGGGGCCCGTGA-GCACGAGGACACGTTTGAGCA----CCGG-ATC-CCATCACTATGCGGATGAGTTCAGTTGGACGCGTGAGGCATATAAGGTTTTTGCGTAACCATACCAAC---AAACCTGCCCAGCAGAACGACCCG-TGAACCTGTTGAAACAACTGGGGGTGTGGGGGATCTCGCCC-TTGCCCCCGAACGGTAGGG-AGACACTTGTGCATCCCTGCCGAACAACGAACCCCGGCCGCGG-TC-CGCGCCAAGGAACTTTAACGAAAGAG--CCTCCGGCCGCCTCGGAAACGGTAGTGCG-TGCG-GGAGGTGA-ATCTTGTCTAGA-CCCA-TCGTTGCCCCCAACCCCATCTCCTTGCAAAGGGACGA-GGGGGCCTGTGGGGCAGAAATTGGCCTCCCGTGAGCTCATGCATGCGGTTGGCCTAAAAGCGAGTCCTCGGC-GACGCGCGCCACGACAATCGGTGGTTGTCAAA-CCCTCGTGTCCCGTCGTGCGTGCGTGCGCGTCGCTCATCGTGTGCT-C-CTTGACCCTGCTTGTGTCGCGCTAGCGAAGCTTCCAACGCGA Betula_populifolia CCGTTTTGCTTTTTTTTT-GCTTTTTGGTCCGCTCCGGTTTCGCACGCCGTGGCCCACCTAGCGGAGCTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-TCTACTTCC-AAATACCTAGTTTTTATCA-------------TGAAAACTGTTTTTAAATGGAAT-TTTA-ATTGTCGGGGCCCGTGA-GCACGAGGACACGTTTGAGCA----CCGG-ATC-CCATCACTATGCGGATGAGTTCAGTTGGACGCGTGAGGCATATAAGGTTTTTGCGTAACCATACCAACTCGAAACCTGCCCAGCAGAACGACCCG-TGAACCTGTTGAAACAACTGGGGGTGGGGGGGATCTCGCCCCTTGCCCCCGAACGGTAGGG-AGACACTTGTGCATCCCTGCCGAACAACGAACCCC-GGCGCGG-TC-CGCGCCAAGGAACTTTAACGAAAGAGTGCCTCCGGCCGCCTCGGAAACGGT-GTGCG-TGCG-GGAGGTGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCTCCTTGCAAAGGGACGA-GGGGGCCTGTGGGGCAGAAATTGGCCTCCCGTGAGCTCATGCATGCGGTTGGCCTAAAAGCGAGTCCTCGGC-GACGCGCGCCACGACAATCGGTGGTTGTCAAA-CCCTCGTGTCCCGTCGTGCGTGC---CGCGTCGCTCATCGTGTGCT-C-CTTGACCCTG-CTGCGTCGCGCTAGCGACGCTTCCAACGCGA Betula_pumila CCGTTTTGCTTTTTTTTT-GCTTTTTGGTCCGCTCCGGTTTCGCACGCCGTGGCCCACCTAGCGGAGCTGGGTGAGCACATTTT-CGAGCTCAAAATCCATGGTT-TCTACTTCC-AAATACCTAGTTTTTATCAGTACTG--CACA-TGAAAACAGTTTTTAATTGGAAT-TTTA-ATTGTCGGGGCCCGTGA-GCACGAGGGCACGTTTGAGCA----CCGG-ATC-CCATCACTATGCGGATGAGTTCAGTTGGACGGGTGAGGCATATAAGGTTTTTGCGTAACCATACCAACTCGAAACCTGCCCAGCAGAACGACCCG-TGAACCTGTTGAAACAACTGGGGGTGGGGGGGATCTCGCCCCTTGCCCCCGAACGGTAGGG-AGACACTTGTGCATCCCTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTTAACGAAAGAGTGCCTCCGGCCGCCTCGGAAACGGT-GTGCG-TGCG-GGAGGTGA-ATCTTGTCTAGA-ACCAATCGTTGCCCCCAACCCCATCTCCTTG{AC}AAAGGGACGA-GGGGGCCTGTGGGGCAGAAATTGGCCTCCCGTGAGCTCATGCATGCGGTTGGCCTAAAAGCGAGTCCTCGGC-GACGCGCGCCACGACAATCGGTGGTTGTCAAA-CCCTCGTGTCCCGTCGTGCGTG{AC}---CGCGTCGCTCATCGTGTGCT-C-CTTGACCCTG-CTGTGTCGCGCTAGCGACGCTTCCAACGCGA Carpinus_betulus CCGTTTTGCC------------TTTCGGTCCGCGCGGCGTGC--------------AGCCAA-GG--CTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-CTGACCCCC-AAATAGCCCATTTTTGCACGTGCTC--GGCCGGGGAAATTGTTTTT--ACGGGGCATTTCGATTATCGCGGCGGGCGCGGCACGGGGACACGCGCGAGCG----CCGG-ATC-CCACGACTATTGGGGAGTGTTCACGTAGGCGCGTGAGGCTTATATGCTTTTTGCGTAAGGATTCTAACTCGAAGCCTGCCCAGCAGAACGACCCG-CGAACTTGTATAAACAACCGGGGGCAGGGG-GATCTCGCCCCGTGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCTTGTCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCTCGGAAACGAT-GCGCG-TGTC-GGAGGCGA-ATCTTGTACAAA-ACCAATCGTCGCCCCCAACCCCATCGCCTCTCCAAGAGTCGAGGGCAGTCTGTGGGGCGGACATTGGCCTCCCGTGCGCTTCCAATTGCGGTTGGCCTAAAAGCGAGTCCTAGGC-GACGAGCGCCACGACAATCGGTGGTTACCAAA-CCCTCGTGTCCCGTCGTGCGTGC---CTCGTCGCTCATCTTGTGCT-C-TGTGACCCTG-TAGCGTCGCGATCGCGACTCTTCCAATGCGA Carpinus_caroliniana_virginiana CCGTTTTGCC------------TTTTGGTCCGCGC----------------------------GG--CTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-CTGACCCCC-AAATAGCCCATTTTTGCACGTGCTC--GGCCGGGAAAATTGTTTTT--ACGGAGCATTTCGATTATCGCGGCGGGCGGGGAACGGGGACACGCGCGAGCG----CCAG-ATC-CCACAACTATTGGGGAGTGTTCACGTAGGCGCGTGAGGCTTATATGCTTTTCGCGTAAGGATGATAACTCGAAACCTGCCCAGCAGAACGACCCG-TGAACTTGTATAAACAACCGGGGGCAAGGGGCTTGGTGCCTCGTGCCCTCGAACGGCAAGG-AGACACTCGTGCCTTCTTGTCAAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCTCGGAAACGGT-GTGCG-TGTC-GGAGGCGA-ATCTTGTACAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCTAAGAGGCGAGGGCAGTTTGCGGGGCGGACATTGGCCTCCCGTGAGCTTCCACTTGCGGTTGGCCTAAAAGCGAGTCCTAGGC-GACGAGCGCCACGACAATCGGTGGTTGCCAAAACCCTCGTGTCCCGTCGTGCGTGC---CTCGTTGCTCATCTTGTGCT-C-TATGACCCTG-TAGTGTCGCGATTGCGACTCTTCCAATGCGA Carpinus_cordata CCGTTTTGCT------------CTTTCGTCCGCAAGCCTTGC--------------ATTTAG-GG--CAAGGTGAGCCCATTTT-CGAGCTCAAAATCCGTCTTT-TTGACCCCC-AAATATCTACTCTTCGTACGTGATT--CGTCTGGAAAATTATTTTT--ATTGCGGAATTCGATTATCG------GTGCGGCACGGGGAGACGTTGGAGCG----TCGG-ATC-CCACAACATTTAGGGAGTGTTCACCAAGACGGGTGAGGCTTATATATTTTTTGCGTAAGGATGCTAATTCGAAACCTGCCCAGCAGAACGACCCG-TGAACTTGTATAAACAACTGGGGGCAGGGGGGATCTCGCCCCCCGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCTTGTCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCCCGGAAACGGT-GTGCG-TGTC-GGAGGCGA-ATCTTGTACAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCAGTTTGAGGGGCGGACATTGGCCTCCCGTGAGCTTCTGCTTGC{AGT}GCTGGCCTAAAAGCGAGTCCTAGGC-GACGAGCGCCACGACAATCGGTGGTTGTCAAAACCCTCGTGTCCCATCGTGCGTGC---CTCGTTGCTCATCTTGTGCT-C-TGTGACCCTG-TAGCGTCG?GCTTGCGGCTCTTCCAATGCGA Carpinus_fangiana CCGTTTTGCT------------TTTTCGTCTGCAAGCCTTGC--------------ACTTAG-AG--CAAGGTGAGCCCATTTT-CGAGCTCAATATCCGTCTTT-TTGACCCCC-AAATAGCTCATCTTCGTACGTGATT--CGTTGGGAAAATATTTTTT--ATTGAGTAATTCAATTATCT------GTGCGGCACGGGGACACGTGCGTGCG----TCGG-ATC-CCACAACATTTAGGGAGTGTTCACCTAAACGGGTTTGGCTTATATATTTCTTGCGTAAGGATGCTACCTCGAAACCTGCCCAGCAGAACGACCCG-CGAACTTGTATAAACAACTGGGGGCGGGGGGGATCTCGCCCCGCGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCTTGTCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCCCGGAAACGGT-GCGCG-TGTC-GGAGGCGA-ATCTTGTACAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCAGTTTGAGGGGCGGACATTGGCCTCCCGTGAGCTTCTGCTTGCGGCTGGCCTAAAAGCGAGTCCTAGGC-GACGAGCGCCACGACAATCGGTGGTTGTCAAAACCCTCGTGTCCCGTCGTGCGTGC---CTCGTTGCTCAT{AC}TTGTGCT-C-TGTGACCCTG-TAGCGTCGCGCTTGCGACTCTTCCAATGCGA Carpinus_japonica CCGTTTTGCT------------TTTTGGTCCGCGCGGCTTGC--------------AGCCAG-GG--CTGGGTGAGCACATTTT-CGAGCACGAAATCCATCGTT-TCGACCCCC-AAACAGCTCATCCTTATGGGTGCTC--CGTCGGGAAAACTGTTTCT--GTGGAGTATTTCGATTATCGGTGCGGGTGCGGCACGGGGACACGTGCGGGCG----CCGG-ATC-CCACGACCATTAGGGAGTGTTCACCTAGACGCGTGAGGCTTATATGCTTTCCGCGTGAGGATGATAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACTTGTATAAACAACTGGGGGCAGGGGGGATCTCGCCC{CT}GTGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCCTGTCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCCCGGAAACGGT-GCGCG-TGTC-GGAGGCGA-ATCTTGTACAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCAGTTTGCGGGGCGGACATTGGCCTCCCGTGAGCTTATGCTTGCGGCTGGCCTAAAAGCGAGTCCTAGGC-GACGAGCGCCACGACAATCGGTGGTTGCCAAAACCCTCGTGTCCCGTCGTGCGTGC---CTCGTCGCTCATCTTGTGCT-C-TGTGACCCTG-TAGCGTCGCGCTTGCGACTCTTCCAATGCGA Corylus_americana TCATTTTGGT----TTTA-GCTTTTTGGTCCGCGCGGCTTTG----------------CCAG-GG--CTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCGTT-TTGACCCCC-AAGTAGCTCATTTTCAGCCGTGCTC--CGTAG--AAAAGCGTTTT---ACGGAGTGTTTGGTTAATCGCGATGCAAAAGTCAAACGGACACGTGCGAGCG----CCGG-ATC-CATTAACCATTAGGGTCAGTTCAGCTAGACGCGTGAGGCTTATATGTATTTTGCGTAAGGATGCTAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACTTGTATAAACAACCGGGGGCGGGGGGGTTCTCGCCCCGTGCCCCCGAACGGCGGGG-AGACACTCGTGCCTTCTTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAACTAAAGAGTGCCTCCGGTCGCCTCGGAAACGGC-GTGCG-TGCC-GGGGGCGA-ATCTTGTGCAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCGGTCTGCGGGGCGGACATTGGCCTCCCGTGAGCTTTCGCTCGCGGCTGGCCTAAAAGCGAGTCCTCGGC-GACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGTCCCGTCGTGCGCGG---CTCGTCGCTCGTCTTGTGCT-C-TGTGACCCTG-TAGCTGCGCGCTCGCGACTCTTCCA------ Corylus_colurna TCATTTTGCT----TCTA-GCATTTTGGTCCGCGCGGCTTTGGGCCACGGTCACCTAGCCTG-GG--CTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCATT-TTGACCCCC-AAGTAGCTCATTTTCATCCGTGCTC--TGTAG-AAAAAGCGTTTTT--ACGGAGTATTTGGCTAATCACGATGGAAAAGTCAAACGGACACGTGCGAGGG----CCGG-ATG-CATTAACTGTTAGGGTCAGTTCAGCTAGACGCGTGAGGCTTATATGTATTTTGCGTAAGGATGCTAACCCGAAACCTGCCCAGCAGAACGACCCG-CGAACT{CT}GTATAAACAACTGGGGGCGGGGGGGTTCTCGCCCCGTGCCCCCGAACGGCGGGG-AGACACTCGTGCCTTCTCGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAACTGAAGAGTGCCTCCGGTCGCCTCGGAAACGGC-GTGCG-TGCC-GGAGGCGA-ATCTTGTGCAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCGGTCTGCGGGGCGGACATTGGCCTCCCGTGAGCTTCCGCTCGCGGCTGGCCTAAAAGCGAGTCCTCGGC-GACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGCCCCGTCGTGCGCGG---CTCGTCGCTCGTCTTGTGCT-C-TGTGACCCTG-TAGCTGCGCGCTCGCGACTCTTCCG------ Corylus_cornuta_cornuta TCATTTTGCT----TTTT-GCTTTTTGGTCCACGCGGCTTT-GGACACC-TAGCCTAGCCAG-GG--CTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCATT-TTGACCCCC-AAGTAGCTCATTTTCATCCGCGCTC--TATTG--AAAAGCGTTTTA--ACGGAGTATTTGGTTAATCACAATGCAACAGTCAAGCGGACACGTGCGAGAG----CCGG-ATC-CATTAACTACTAGGGTCAGTTCAGCTAGACGCATGAGGCTTATATGTATTGTGCGTAAGGATACTAAC??GAAA????????GCAGAACGACCCG-CGAACTTGTATAAACAACTGGGGGCGGGGGGGTTCTCGCCCCGTGCCCCCGAACGGCGGGG-AGACACTCGTGCCTTCTTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAACTAAAGAGTGCCTCCGGTCGCCTCGGAAACGGT-GTGCG-TGCC-GGAGGCGA-ATCTTGTGCAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGGCGAGGGCGGTCTGCGGGGCGGACATTGGCCTCCCGTGAGCTTTCGCTCGCGGCTGGCCTAAAAGCGAGTCCTCGGC-GACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGTCCCGTCGTGCGCGG---CTCGTCGCTCATCTTGTGCT-C-TGTGACCCTG-TAGCTGCGCGCTCGCGACTCTTCCA------ Corylus_ferox TCATTTTGCT----TTTT-GCTTTTTGGTCCGCGCGGCTTTG---------CACCTAGCCAA-GG--CTGGGTGAGCATATTTT-CGAGCTCAAAATCCATCATT-TCGACCCCCCAAATACCACATTTTCATCCGTGCTC--TGTCG--AAAAGCGTTTTT--ACGGAGTATTTGGTTAATCACGACGCAAAAGTCAAACGGACACGTGCGAGCG----CCGG-ATC-CATTCACTATTAGGGTCAGTTAAGCTAGACGCGTGAGGCTTATATGTATTTTGCGTAAGGATGCTAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACTTGTATAAACAACTGGGGGCGGGGGGGTTCTCGCCCCGTGCCCCCGAACGGCAGGG-AGGCACCCGTGCCTTCCTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCTCGGAAACGGT-GTGCG-TGCC-GGAGGCGA-ATCTTGTACGAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCGGTCTGCGGGGCGGACATTGGCCTCCCGTGAGCTTTCGCTCGCGGCTGGCCTAAAAGCGAGTCCTCGGC-GACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGTCCCGTCGTGCGCGG---CTCGTCGCTCGTCTTGTGCT-C-TGTGACCCTG-TAGCTGCGCGCTCGCGACTCCTCCG------ Corylus_maxima TCATTTTGCT----TTTA-GGTTTTTGGTCCGCGCGGCTTT-GGCCACGGTCACCTAGCCAG-GG--CTGGGTGAGCACATTTT-CGAGCTCAAAATCCATCATT-TTGACCCCC-GAGTAGCTCATTTTCATCCGTGCTC--TGTAG--AAAAGCGTTTTTT-ACGGAGTATTTGGTTAATCACGATGCAAAAGTCAAACGGACACGTGCGAGCG----CCGG-ATC-CATTAGCTGTTAGGGCCAGTTCAGCTAGATGCGTGAGGCTTATATGTATTTTGCGTAAGGATGCTAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACTTGTATAAACAACCGGGGGCGGGGGGGTTCTCGCCCCGTGCCCCCGAACGGCGGGG-AGACACTCGTGCCTTCTTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAACTAAAGAGTGCCTCCGGTCGCCTCGGAAACGGC-GTGCG-TGCC-GGGGGCGA-ATCTTGTGCAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCGGTCTGCGGGGCGGACATTGGCCTCCCGTGAGCTTTCGCTCGCGGCTGGCCTAAAAGCGAGTCCTCGGC-GACGAGCGCCACGACAATCGGTGGTTGACAAA-CCCTCGTGTCCCGTCGTGCGCGG---CTCGTCGCTCGTCTTGTGCT-C-TCTGACCCTG-TAGCTGCGCGCTCGCGACTCTTCCA------ Ostry_japonica CCGTTTTGCT------------TTTTGGTCCGCGCGGCTGGCCGCAGCGGTCACCTAGCCAG-GG--CTGGGTGAGCAAAATTT-CGAGCTCAAAATCCATCGTT-TTGAGCCCC-AAATGCCTCATTTTCGTACGTGCTC--CGTCGGAAAAAGCCTTTTT--ATGGAGTATTTCTATTATCGCGGCGGGTGCGACACGGGGACACGTGCGAGCA----CCGG-GTC-CCATGACTATCGGTGTGAGTTCACCTAGAAGCGTGAGGCTTATATGTTTTTTGCGTGAGGATGCTAACTCGAAACCTGCCCAGCAGAACGACCCG-CGAACTTGTATAAACTACTGGGGGCAGGGGGGATCTCGCCCCGTGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCTTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCCCGGAAACGGT-GCGCG-TGCC-GGAGGCGA-ATCTTGTACAAA-ACCAATCGTTGCCCCCAACCCCATCGCCTCTCCAAGAGACGAGGGCAGCTTGTGGGGCGGACATTGGCCTCCCGTGAGCTTCCACTTGCGGTTGGCCTAAAAGCGAGTCCTAGGC-GACGAGCGCCACGACAATCGGTGGTTGTAAAA-CCCTCGTGTCCCGTCGTGCGTGC---CTCGTCGCTCGTCTTGTGCT-C-TGTGACCCTG-TAGCGTCGCGACCGCGACTCTTCCAATGCGA Ostrya_virginiana CCGTTTTGCT------------TTTTGGTCCGCGCGGGTTGCGGCCCCGGTCACCTAGCCAG-GG--CTGGGTGAGCACAATTT-CGAGCTCAAAATCCATCGTT-TTGACCCTC-GAATACCTCATTTTCGTACGTGCTC--GATCGGAAAAAGTCTTTTT--ATGGAGTATTTTGATTATCGTGGCGGGTGCGACACGAGGACACGTGCGAGCG----CCGG-ATT-CCGTGACTACTGGTGCGAGTTCACCTAGAAGCGTGAGGCTTATATGTTTTTTGCGTAAGGATGCTAAT----------CCCAGCAGAACGACCCG-CGAACTTGTATAAACAACTGGGGGCAGGGG-GTTCTCGCCCCGTGCCCTCGAACGGCAGGG-AGACACTCGTGCCTTCTTGTCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCCCGGAAACGGT-GCGCG-TGTC-GGAGGCGA-ATCTTGTACAAA-ACCAATCGTTGCCCCCAACCCCTCCGCCTCTTCGAGAGACGAGGGCAGTTTGCGGGGCGGACATTGGCCTCCCGTGAGCTTCCACTCGCGGCTGGCCTAAAAGCGAGTCCTAGGC-GACGAGCGCCACGACAATCGGTGGTTGTAAAA-CCCTCGTGTCCCGTCGTTCGCGC---CTCGTCGCTCATCTTGTGCT-C-TGTGACCCTG-TAGCGTCGCGATCGCGACTCTTCCAAT-CGA Ostryopsis_davidiana CGGTTTTGCT----------AATTTTGGTCCGCGCGGCTTTCCGCCGCGGTCACCTAGCCAG-GG--CTGGGTGAGCACATTTT-CGAGCTCAAACTCCATCGTT-TTGACCCCC-AATTATCTCATTTTCATCTGTGCTC--CATCGGAAAAAGCGTTTTT--ATGGCGTATTTCGATTATCGTGGAGGGTGCGGCACGAGGACACGTGCGAGCG----CCGG-ATC-CCACCACTATTAGGGTGAGTTCACCTAGATGCATGAGGCTTATATGTTTTTTGCGTAGGAATGTTAACT-GAAACC-GCACAGCAGAACGACCCG-TGAACTTGTATAAACAACTGGGGGTGGGGGG{AG}ACTTACCTCCCTGCCCTCGAACGGTAGGG-AG{ACT}CACTCGTGCCTTCCTGCCGAACAACGAACCCC-GGCGCGG-TC-TGCGCCAAGGAACTTCAATTAAAGAGTGCCTCCGGTCGCCTCGGAAACGGT-GTGCG-TGTC-GGAGGTGA-ATCTTGAACAAAAACCAATCGTTGCCCCCAACCCCATTGCTTCTCCAAG-GAGGCGGGCGGTTTGTGGGGCGGACATTGGCCTCCCGTGAGCTTTTGATTGCGGCTGGCCTAAAAGGGAGTCCTCGGC-{AGT}ACGAGCGCCAC{AGT}ACAATCGGTGGTTGACAAA-CCCTCGTGTCCCGTCGTGCGTGC---CTTGTCGCTCATCTCGTGCT-C-TGTGACCCTA-TAG{CT}GTCG{CT}GCTTGCGACTCTTCCAACGCGA Ticodendron_incognitum CTGTTTTGACTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCTTGAGGGTTATAGAATTTAACCCTG-CCAATCTGTCTCAAAACCTGCCCAGCAGAACGACCCG-CGAACCTGTCAAATTGACTGGGGACAGGGG-GAACTTGCCCCTTAACC-CAAACGACAAGG-AAGCATTCGTGCCTCCTTGTCAACCAACGAACCCC-GGCGCGT-TA-TGTGCCAAGGAAATTGAATGAAAGAGTTCCTCCGGTCATCTCGGAAACGAT-GTGTG-TGCT-GGAGGCGACATCTTATCTTGA-ACCAATCGTTACCCCCAACCCCATTGCCTCTCAAAGAGACTATGGT-GCATTTGGGGGGGATGTTGGCCTCCCGTGAGCTGTTAATTGCGGTTGGCCTAAAATCGAGTCTTAGGC-GATGAGCGCCACGACAATCGGTGGTTGAAAAACCCTCAGTGTCCCGTCGAGTGCGT---CTCCTTGCCCATTGTTTGCT-C-TGAGACCCTT-GTGTGTTGCGCCTGCAACGCTTCCAACGCGA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Forestetal_Betulaceae) = N: 1-759; CODONPOSSET CodonPositions (CHARACTERS = Forestetal_Betulaceae) = N: 1-759; END; [ The following blocks are output data for analysis step 2182 ] BEGIN TREES; TITLE Tb6957; LINK TAXA = TaxaForAnalysisStep2182; TREE Fig._1 = [&R] (((((((Corylus_maxima,Corylus_americana),Corylus_colurna),Corylus_cornuta_cornuta),Corylus_ferox),(Ostryopsis_davidiana,(((Carpinus_fangiana,Carpinus_cordata),((Carpinus_caroliniana_virginiana,Carpinus_betulus),Carpinus_japonica)),(Ostry_japonica,Ostrya_virginiana)))),(((((Alnus_nitida,Alnus_cremastogyne),(Alnus_incana_rugosa,Alnus_acuminata)),Alnus_viridis_crispa),Alnus_maritima),(((Betula_alnoides,Betula_pumila,Betula_humilis,(Betula_populifolia,Betula_pendula)),Betula_nigra),Betula_insignis))),Ticodendron_incognitum); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1851] END;