#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2026; 13:14 GMT TreeBASE (cc) 1994-2008 Study reference: Tsuneda A., Hambleton S., & Currah R. 2004. Morphology and phylogenetic placement of Endoconidioma, a new endoconidial genus from trembling aspen. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1209] [ The following blocks are input data for analysis step 2184 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2184; DIMENSIONS NTAX=28; TAXLABELS Aureobasidium_pullulans_AF013229 Aureobasidium_pullulans_AF121287 Aureobasidium_pullulans_AJ276062 Dothidea_hippophaes Dothidea_insculpta Dothiora_cannabinae Dothiora_europaea Dothiora_rhamni_alpinae Endoconidioma_populi_UAMH_10297 Endoconidioma_populi_UAMH_10298 Hormonema_dematioides_AF013228 Hormonema_dematioides_AJ278927 Hormonema_macrosporum Hormonema_prunorum Hormonema_sp_ATCC74360 Kabatiella_lini Kabatina_juniperi_AF182376 Kabatina_juniperi_AF260224 Kabatina_thujae Phaeocryptopus_gaeumanii Phaeosclera_dematioides Rhizosphaera_kalkhoffii Rhizosphaera_macrospora Rhizosphaera_oudemansii Rhizosphaera_pini Sarcinomyces_crustaceus Scleroconidioma_sphagnicola Sydowia_polyspora ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2550] TITLE ITS_rDNA; LINK TAXA = TaxaForAnalysisStep2184; DIMENSIONS NCHAR=567; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Aureobasidium_pullulans_AF013229 CATT-AAAGAG-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTT-AACCGGTCGTCTGAGT-TAAAATTTTGAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGCG-TCGTCC-TT---AGTTTGGGCGCGCCCTTAAAG-ACCTCGGCGAGGCCACTC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGAACT-CCG-CCGAC---------TGAAACCTTTAT-TTTTTCTAGGTTGACC Aureobasidium_pullulans_AF121287 CATT-AAAGAG-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TTC---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTTAAACCGGTCGTCTGAGT-TAAAATTTTGAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGTG-CCGTCC-TT---AG-TTGGGCGCGCC-TTAAAG-ACCTCGGCGAGGCCACTC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGAACT-CTG-CCGAT---------TGAAACCTTT-TATTTTTCTAGG?????? Aureobasidium_pullulans_AJ276062 ???????????-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTT-AACCGGTCGTCTGAGT-TAAAATTTTGAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGTG-CCGTCC-TT---AG-TTGGGCGCGCC-TTAAAG-ACCTCGGCGAGGCCTCAC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGACTT-CTG-CCGAC---------TGAAACCTTT--ATTTTTCTAGGTTGACC Dothidea_hippophaes CATTAAAAGA--TT-GAGTGTCGCGACCTAAAAAATCGCGA-CC--ACTTCCAACCCTCTGTTGTTATAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-CTCGGAC-AGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GGGACTCCATTG-CCG-----------TTAAACCTTTTATTTTT-ATAGGTTGACC Dothidea_insculpta CATTAAAAGAA-TTGGAGTG-----AC-T-AACCGTCCT---CCG-ACTTCCAACCCTCTGTTGTTATAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGTGCCCGCCAGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GGGACTCCATTG-CCG-----------TTAAACCTTTTA-TTTT-CTAGGTTGACC Dothiora_cannabinae CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTCGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGCGAAGGTTCTC-CCGAGCGCGCCAGTC-TTCGGAC-AGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTGTT-TT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACCGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGACGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GGGACCTCATTG-CCG-----------TTAAACC-TTTTATTTTTC-A???????? Dothiora_europaea CATT-AAAGAGTTAAGGGT-CTCC---------------GGCCCGAACCTCCAACCCTCTGTCGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGCGAAGGTTCTC-CCGAGCGCGCCGGTC-TTCGGAC-GGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTGTT-TT-AAACCAGTCGTCTGAGTATAAAATTTTAATATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTT{CT}CTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAAA-GTCTTATAA-GCTTGGT-GGGACCTCATTG-CCG-----------TTAAACCCTCCCG???????????????? Dothiora_rhamni_alpinae CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTTGTTATAACTA----CCTCGTTGCTTTGGCGGGACCGC-AAGGTTCCC-CCGAGCGCGCCGGTC-TCCGGAC-AGGCGAGCGCCCGCCAGAGTCTAACCAAACTCTTGTTTTT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACCGCTTGGTATTGGGCA-CCGTCCGCCGTAAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTGCCCG-----------TTAAACCTCAATTTTTTTC-AGGTTGACC Endoconidioma_populi_UAMH_10297 CATT-AAAGAG-TTAGGGT-CCC----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCGTTAACC-TTCGGGT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATTTTAC-AGGTTGACC Endoconidioma_populi_UAMH_10298 CATT-AAAGAG-TTAGGGT-CCC----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCGTTAACC-TTCGGGT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATTTTAC-AGGTTGACC Hormonema_dematioides_AF013228 CATT-AAAGAG-ATAGGGT-CTTC---------A-T---GGCCCG-ACCTCCAACCCTCTGTTGTTCAAACTA----CCTTGTTGCTTTGGCGGGACCGTTTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-AGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-AAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGCTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-CGGATCTCATTG-CCG-----------TTAAACCTTTAAATTTT-CTAGGTTGACC Hormonema_dematioides_AJ278927 CATT-AAAGAG-ATAGGGT-CTTC---------A-T---GGCCCG-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTCTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-CAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGGTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-CGGATCTCATTG-CCG-----------TTAAACCTTTAAATTTT-CTAGGTTGACC Hormonema_macrosporum CATT-AAAGAG-ATAGGGT-CTTC---------A-C---GGCCCG-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTCTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-AAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGGTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTACAA-GCTTGGT-CGGATCTCATTG-CCG-----------TTAAACCTTTAAATTTT-CTAGGTTGACC Hormonema_prunorum CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTTGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGCAAAGGTTCTC-CCGAGCGCGCCGGTC-TTCGGAC-AGGCGAGCGCCCGCCAGAGTCTAACCAAACTCTTGTT-TT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGCCGTAAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATATTTC-AGGTTGACC Hormonema_sp_ATCC74360 CATT-AAAGAG-TTAGGGT-CCT----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCGTTAACC-TTCGGGT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAGAACCTCGGCGGGGTTTTTC-CAACTTCGGGCGTAGTA-AAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACC-TTTTATTTTTC-AGGTTGACC Kabatiella_lini CATT-AAAGAG-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTT-AACCGGTCGTCTGAGT-TAAAATTTTGAATATATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGCG-TCGTCC-TT---AA-TCGGGCGCGCC-TTAAAG-ACCTCGGCGAGGCCACTC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGAACT-CTG-CCGAC---------TGAAACCTTTATATTTTTCTAGGTTGACC Kabatina_juniperi_AF182376 CATT-AAAGAG-TTAGGGT-CCT----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTATAACCA----CTTCGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGCGCCCGCCGGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACTCGTCCGCCG-TAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCAT-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATTTTTC-AGGTTGAC? Kabatina_juniperi_AF260224 CATT-AAAGAG-TTAGGGT-CCC----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGCGCCCGCCGGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACTCGTCCGCCG-TAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTCCAT-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTCTATTTTTC-AGGTTGACC Kabatina_thujae CATT-AAAGAG-ATAGGGT-CCT----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTATAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGCGCCCGCCGGAGTCCAACCAAACTCTTGTTTTT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACTCGTCCGCCG-CAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCAT-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCCTTTTATTTTTC-AGGTTGACC Phaeocryptopus_gaeumanii CATT-AAAGAG-TAAGGGT---T--ATTC-----GT---AGCCCG-ACCTCCAA{AC}CCTTTGTTGTTATAACTA----CCTCGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGC-TGCTGGTC-TTCGGCC-CGGCAAGTGCCCGCCAGAGTCTACTCAAACTCTTGTT-TT--AACCGGTCGTCTGAGT-TAAACTTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAAATCTTTGAAACGCACATTGCGCTCCCTGGTATTCCGGGGGAGCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTAGGCCATCGTCCCCCG-AAAGGTGGGCGTGCC-TCAAAC-ACCTCGGCGGAACCTCAC-CGGCTTTGGGCGTAATA-AAATTTC-TCAA---CGTCTTATAAGTACCGGTTCTGACTCCTTTG-CCG-----------TTAAACCCCAAACTTTT-AAAGGTTGACC Phaeosclera_dematioides CATT-AATGAG-TGAGGGT-CCTC---------A--C-CGGCCCG-ACCTCCAACCCTTTGTCGTTTAAACAAAAACCCTTGTTGCTTTGGCGGTGCCGTCC-G--CCG--GCCGGCCCTCTGTGG-CCCTA---GGCCGGGCGCCCGCCGGGGTGAAACCAAACTCTTGCGATGC-AACCATACGTCCGAGT-AACCGAT--AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGGGGG-GCATGCCTG-TTCGAGCGTCATTACACCAATCAAGCTCTGCTTGGAGTTAGGTCTTCGTCCCCCGTCAGGGCGGGCGTGCC-TCAAAA-CATTCGGCGAAGTCACAC-CGGCTTTGGGCGTAGTA-GAATCT--TCAAAA-CGTCTAATGT-GGCCGG--GCGGGTCTTCTG-CCG-----------TCAAACCGCAAACATTTACCAGGTTGACC Rhizosphaera_kalkhoffii CATT-AAAGAG-TAAGGGTCCTCC---------------GGCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAG-GCACCGGTC-TTCGGAT-CGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAAC-CGGCTTCGGGCGTAGTA-GAGTTAAATCAAAAACGTCTTATAA-GTCTGGT-TAGAACCCATTG-CCG-----------TAAAACCTTTTTATTTT-CTAGGTTGACC Rhizosphaera_macrospora CATT-AAAGAG-TAAGGGT-CTCC---------------GGCCCGAACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAGCGCACCGGTC-TTCGGAT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAAC-CGGCTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAAAGTCTGGT-TAGAACCCATTG-CCG-----------TAAAACCTTTTATTTTTTCTAGGTTGACC Rhizosphaera_oudemansii CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAGCGCACCGGTC-TTCGGAT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAACACGGCTTCGGGCGTAGTAAAAGTTAAATCAAAA-CGTCTTATAA-GTCTGGT-TGGAACCCATTG-CCG-----------TAAAACCTTTTTTTTTT---AGGTTG-CC Rhizosphaera_pini CATT-AAAGAG-TAAGGGT-CTCC---------------GGCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAG-GCACCGGTTCTTCGGAT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTGAC-CGGCTTCGGACGTAGTA-GAGTTAAATCAAAA-CGTCTCATGA-GTCCGGT-TGGAACCCATTG-CCG-----------TAAAACCTTTTTATTT--CTAGGTTGACC Sarcinomyces_crustaceus CATTAAAAGAG-ATAGGGT-CTC----------A--C--GGCCCG-ACCTTCAACCCTTTGTTGTTTAAA--AAAA-CC-TGTTGCTTTGGCGGGACCGTTC-G--TCCTCGTGACGGACTGTCGGTCTTCGGCCCGGCAAGCGCCCGTCAGAGTCCAACCAAACTCTTGATAT---AACCAGTCGTCTGAGAATAAAGATT-TAATCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTAGGCCCTCGCCCCT-GTCAAAGGGGGCGTGCC-TCAAAC-ACCTCGGCGAAGTCTCAT-CGGCTTTGGGCGCAGTA-GAATTTACTCAAAA-CGCTCGTGGA-GTCTGGT-GGAA--CTTTTG-CCGCAAAACCGCGTCGAAAGACACA--TTTTTAAAGGTTGACC Scleroconidioma_sphagnicola CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAGCGCGCCGGTC-TTCGGAT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGACGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAAC-CGGCTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATGA-GTCTGGT-TAGAACCCATTG-CCG-----------TAAAACC-TTTTATTTT-CTAGGTTGACC Sydowia_polyspora CATT-AAAGAG-ATAGGGT-CTTC---------A-T---GGCCCG-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTCTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-CAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGGTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-CGGATCTCATTG-CCG-----------TCAAACCTTTAAATTTT-CTAGGTTGACC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-567; CODONPOSSET CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-567; END; [ The following blocks are output data for analysis step 2184 ] BEGIN TREES; TITLE Tb6959; LINK TAXA = TaxaForAnalysisStep2184; TREE Fig._20B = [&R] (Sarcinomyces_crustaceus,((((((Rhizosphaera_pini,Rhizosphaera_oudemansii),Rhizosphaera_kalkhoffii,Rhizosphaera_macrospora),Scleroconidioma_sphagnicola),((((((Endoconidioma_populi_UAMH_10297,Endoconidioma_populi_UAMH_10298),Hormonema_sp_ATCC74360),(((Sydowia_polyspora,Hormonema_dematioides_AJ278927),Hormonema_macrosporum),Hormonema_dematioides_AF013228)),(Dothidea_hippophaes,Dothidea_insculpta)),(Kabatina_thujae,(Kabatina_juniperi_AF260224,Kabatina_juniperi_AF182376))),((Dothiora_rhamni_alpinae,Hormonema_prunorum),(Dothiora_cannabinae,Dothiora_europaea)))Dothideaceae_and_Dothioraceae),((Aureobasidium_pullulans_AF013229,(Aureobasidium_pullulans_AF121287,Aureobasidium_pullulans_AJ276062)),Kabatiella_lini)),Phaeocryptopus_gaeumanii),Phaeosclera_dematioides); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1853] END;