#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 06, 2024; 6:07 GMT TreeBASE (cc) 1994-2008 Study reference: Kawai H., & Sasaki H. 2004. Morphology, life history and molecular phylogeny of Stschapovia flagellaris (Tilopteridales, Phaeophyceae). Journal of Phycology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1211] [ The following blocks are input data for analysis step 2189 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2189; DIMENSIONS NTAX=11; TAXLABELS Halosiphon_tomentosus_ATL Halosiphon_tomentosus_PAC Haplospora_globosa Phaeosiphoniella_phinneyi Phyllariopsis_brevipes_ssp._brevipes Phyllariopsis_brevipes_ssp._pseudopurpurascens Phyllariopsis_purpurascens Saccorhiza_dermatodea Saccorhiza_polycides Stschapovia_flagellaris Tilopteris_mertensii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2556] TITLE rDNA_ITS2; LINK TAXA = TaxaForAnalysisStep2189; DIMENSIONS NCHAR=1347; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Halosiphon_tomentosus_ATL GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTAAATCATCAAAACTTTGAACGCATCTTGCGCTTCCGGGATATGCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGACAACACTTGCCCGTCCCCCCCG------CCTGT------CAAAGGGAGG------------------GGGTG------CCGCGGC-GGACTGTGCGTGTTCCGGAGCGC-----------CTCGCGTCCGGGTTGCACCCAAGCTCGTGAACCAAA------TGATACCTCTTTTCAGCTGTCGCT--------------------------------------------------------------------------------GCACGGGGTTGTTGA-GGGCGC-TCGCCCGAAATCAAGTACGGCGCGC-------GAACCAACGAC-TCA------CCCAAACGTTGCG----GTG----------------------------AACAAACGGGTTTGG--AGGGGC-ACACCA-------TCTCTACCGA-CTGGCC---------CCCTGGT----GTCGC---------GAGCCTCGTGG-------------------CCCCGCCCTC------------TGGGCC---GCCC---TAC------TTTTGT-TCGGACCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGC--TTTCGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGGCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGATTTCGTCGCGCGTACGGCCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--ACAGTTCCGCTT-CTCCTCCGCCCCTCGGGGCGTTGGTTTGCGTTTCTGTCGTGGCCAGGGCCGGGTAGGGTTGCGGGAGTCTGCGCTTCGGAAGGTAGCTTCTCCTCGGAGAGTGAATACCGGGGCGTGT---CGTCGCGACTCTGGCCGGT-TCTGACGAAATGGTTTTCTTT Halosiphon_tomentosus_PAC GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAACTTTGAACGCATCTTGCGCTTCCGGGATATGCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGACACCACTCGCCCGTCCCCCCCG------CCTGT------CAAAGGGAGG------------------GGGTG------CCGCGAC-GGACTGTGCGTGTTCCGGAGCGC------------TCGCGTCCGGGTTCCACCCAATCTCGTGAACCAAA------TGATACCTCTTTTCAGCTGTCGCT--------------------------------------------------------------------------------GCACGGAGTTGTTGA-CGGCGC-TCGCCCGAAATCAAGTACGGCGCGC-------GAACAAACGAC-TCA------CTCAAACGTTGCG----GTG----------------------------AACAAACGGCTTTGG--GGGGGC-AAACCT-------TCTCTACCGA-CTGGCC---------CCCTGGT---GCGCGC---------GGGCCTCGTGC----------------TGGCTTCGCCGTC------------TGGCCG---CCCC---TAC------TTTTGT-TCGGACCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTACGGCCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGC--TTTCGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGGCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGATTTCGTCGCGCGTACGGCCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--ACAGTTCCGCTT-CTCCTCTGCCCCTCGGGGTGTTGGTTTGCGTTTCTGTCGTGGCCAGGGCCGGGTAGAGTTGCGGGAGTCTGCGCTTCGGAAGGTAGCTTCTCCTCGGAGAGTGAATACCGGGGCGTGT---CGTCGCGACTCTGGCCGGT-TCTGACGAAATGGTTTTCTTT Haplospora_globosa ??????????????????????????????????????????????ACGCACCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAACTTTGAACGCATCTTGCGCTTCCGGGAAATTCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGACACCACTCGCCGG-CCCCCCCG------TCTGT------CAAAGGGCGG------------------GTTTG-------CCAGGC-GGACTCTGAGTGTTCCGAGGCGTGC---------CAAACACCCCGAGTCCACCCAAGCTGCTGAACCACA------ACTATCGGCTT---AACTGTCAGTTTGTTCTCTCTAGAATCGTG----TACGTTGA------------------------------------------------ACACGGGGTTGTTGACGGAACCGTCAGGCGGCCTCAAGACAGCCCAGCACGTGTTGTGGCGACGACATCTGGAGGGCCGGAACCCT-CGGGCAGTTTTGTAGAAGATGGGTTGCTGGGGCGTCCTTCGAGGAGAAGGAGCTAGCGAAGA-------ACGACTCTTCACCAAGC--------------------------------------------------------------------------------------------------------------------TTTCGT-TCGGTCCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAACCGGAAGAAAAGAAACTAACCAGGATTCCCCCAGTACCGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGCC--TTCGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGTCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGATTTCGGCGCGCGTACGGTCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--TCAGATCAGCTTTCCCCTCC-GCCTTCGGGGCGTTGGCTTGCGTTTTTGTCGTGGCCAGGGCCGGGTAGTGTTGCGGGAGTCTGCGCCTCGGAAGGTAGCCTATCCTCGGATGGTGAATACCGTGGCG--TTT-CGTCGCGACGCTGGCCGGT-TCTGACGAAATGGTTTTCTTT Phaeosiphoniella_phinneyi ??????????????????????????????????????????????ACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAACTTTGAACGCATCTTGCGCTTCCGGGAAATTCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGACACCACTCGCCGG-CCCCCCCG------TCTGT------CAAAGGGCGG------------------GTTTG-------CCAGGC-GGACTCTGAGTGTTCCGAGGCGTGC---------CAAACACCCCGAGTCCACCCAAGCTGCTGAACCACA------ACTATCGGCTT---AACTGTCAGTTTGTTCTCTCTAGAATCGTG----TACGTTGA------------------------------------------------ACACGGGGTTGTTGACGGAACCGTCAGGCGGCCTCAAGACAGCCCAGCACGTGTTGTGGCGACGACATCTGGAGGGCCGGAACCCT-CGGGCAGTTTTGTAGAAGATGGGTTGCTGGGGCGTCCTTCGAGCAGAAGGAGCTAGCGAAGA-------ACGA-TCTTCACCAAGC--------------------------------------------------------------------------------------------------------------------TTTCGT-TCGGACCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAACCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGCC--TTCGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGTCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGATTTCGGCGCGCGTACGGTCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--TCAGATCCGCTT-CCCCTCCGCCCTTCGGGGCGTTGGCTTGCGTTTTTGTCGTGGCCAGGGCCGGGTAGTGTTGCGGGAGTCTGCGCCTCGGAAGGTGGCCTATCCTCGGATGGTGAATACCGTGGCG--TTT-CGTCGCGACGCTGGCCGGT-TCTGACGAAATGGTTTTCTTT Phyllariopsis_brevipes_ssp._brevipes GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAATTTTGAACGCATCTTGCGCTTCCGGGTTATCCCTGGCAGCATGCTTGTCGGAGTGTCTGTTGACACATCTCGCCCGCACCGGTTGTTGCGTCGTGTGCT--TCTTTTC--------------------------------------GGAGAAAGGCACGA-----------------------CGA-----CGGGTTCG-----TGGCG--GACTC---------TGCGTGGTCCGGG---GTC--GGTA---------CAGACTCT-----------CGA-GT--CCACCTAAG--CGCAT--GAAGCTCGGCGTATTTTT--------ATTCGGGTTGTTGA-CGGCGCCTGCC---TCGA---GAGGG-GCGGC-------GAACAGACAGC-TCCGT----CT---GCGCGACGAG------TTTCC--GGCAGGAGGG-AAGGAG-----GGAAGGAAGGAAGGAAGGAA-TATGCTA------CGG-GGGGAGACGTCTCGCCGT----CTCTCTT---GGAT-AGATGGCGCCTCTTCCTCTCCCCGTCG---------TCTGTTTC-TCCCC-------CCGTCCTGCCCAAGAGCCAAAGAAACAC---TTTTGTATCGGACCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAAACGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGCCTTTTGGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGTCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGGTTCCGTCGCGCGTACGGCCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--TCGGTCTCGCTT-CTCCTCCGCCCCTCGGGGCGTTGGTGTGCGTTTCCGTCGTGGCCAGGGCCGGGTAGCGTTGCGGGAGCCTGCGCCTCGGAAGGTAGCCTCTCTTCGGAGGGTGAAGACCGTGGCGTTTTTCCGTCGCGACGCTGGCCGGTC-CTGACGAAATGGTTTTCTTT Phyllariopsis_brevipes_ssp._pseudopurpurascens GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAATTTTGAACGCATCTTGCGCTTCCGGGTTATCCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGACACATCTCGCCCGCACCGGTTGTTG-GTCGTGCGCC--TCTTTTCTTTCTTCTTTTTTTCTTGTAAA????????????????GGAGAAAGGCACGA-----------------------CGA-----CGGGTTCG-----TGGCG--GACTC---------TGCGTGGTCCGGG---GTC--GGTA---------CAGACTCT-----------CGA-GT--CCACCTAAG--CGCAT--GAAGCTCGGCGTATTTTT--------ATTCGGGTTGTTGA-CGGCGCCTGCC---TCGA---GAGGG-GCGGC-------GAACAGACAGC-TCCGT----CT---GCGCGACGAG------TTTCC--GGCAGGAGGG-AAGGAA-----GGAATGTACGGGGGGAG----------------------------CGTCTCG-------TCTCTCTT--ACA?T-AGATGGCGCCTCTGCCTCTCCCCGTCG-------------TTTC-TCCCG-------TCGTCCTGCCCAAAAGCCAAAGAAAA----TTTTTGTATCGGACCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATAAAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGCCTTTTGGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGTCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGGTTCCGTCGCGCGTACGGCCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--TCGGTCTCGCTT-CTCCTCCGCCCCTCGGGGCGTTGGTCTGCGTTTCCGTCGTGGCCAGGGCCGGGTAGCGTTGCGGGAGCCTGCGCCTCGGAAGGTAGCCTCTCTTCGGAGGGTGAAGACCGTGGCGT-TTTCCGTCACGACCCTGGCCGGT-TCTCACAACATGGTTTTCTTT Phyllariopsis_purpurascens GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAATTTTGAACGCATCTTGCGCTTCCGGGTTATCCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGACACATCTCGCCCGCACCGGTTG----GTCGTGTAACT--------------------------------------------------------ACGA-----------------------CGA-----CGGGTTCG-----AGGCG--GACTC---------TGCGTGGTCCGGG---GTC---GT----------CAGACTC------------GGA-GT--CCACCTAAG--CGCAT--GAAGCTCGGCGTATAAAAG------GATTCGGGTTGTTGA-CGGCGCCTGCC---TCGA---GAGGG-GCGGC-------GAACAAACAGC-TCCGT----GTCTTGCGCGACGGG------GTTCC--GGCAGGGAGGGAAG--------GGAAGGAAGGAAGGAATGTATG-------------TAGGATGGGAGGA-----TACACATC-TTCTG--TCCGT-ACGTAG-----------------TTCGC--------TTCGTTTCGTGCCGCACGTCCACGTCCTGGCCGAAAACCAA--GACGAAC--TTTTGTATCGGACCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGCCTTTTGGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGTCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGGTTCCGTCGCGCGTACGGCCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--TCGGTCTCGCTT-CTCCTCCGCCCCTCGGGGCGTTGGTCTGCGTTTCCGGCGTGGCCAGGGCCGGGTAGCGTTGCGGGAGCCTGCGCCTCGGAAGGTAGCCTCTCTTCGGAGGGTGAAGACCGTGGCGTGTTT-CGTCGCGACGGTGGCCGGT-TCTGACGAAATGGTTTTCTTT Saccorhiza_dermatodea GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAACTTTGAACGCATCTTGCGCTTCCGGGATATCCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGGCACATCTCGCCCGCACCGGTCG---------GTAA-----------------------------------------------------------------------------------AACGA-----CGGGTTCG-----AGGCG--GACTC---------TGCGTGGTCCGGG---GCC--CGTACTCTTTAACCAGAGTCTGGGAG--ACCCCGA-GT--TCACCTAAG--CTCATGGGAAGCTCGGC--ACTAACG-------GTTCGGGTTGTTGA-CGGGGCCTGCCCC-TCTC---GAGGG-GGGGC-------GAACAGACAGC-TCGGG----CGAAAATGTGTCGGGTT---GTTTCCCC----GGCAAG-GA--------------GAAGCCGG-------------------------------------------------TTCTTA-------AG-TGG------------------------------------ACCGGCTG-------------------ACAGCGATTAC------------GC-TCGGTCCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCCGGCC--TTCGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGTCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGATTCCGTCGCGCGTACGGCCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--TCGGTCTCGCTT-CTCCTCCGCCCCTCGGGGCGTTGGCCTGCGTTTCCGTCGTGGCCAGGGCCGGGTAGCATTGCGGGAGTCTGCGCCTCGGAAGGTAGCCTCTCTTCGGAGGGTGAAGACCGTGGCG--TTT-CGTCGCGACGCTGGCCGGT-TCTGACGAAATGGTTTTCTTT Saccorhiza_polycides GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCCCAACGATGAAGAACGCAGCGAAATGCGATACGGCTTGCGACTTGCAGAATCCAGTGAATCATCAAAACTTTGAACGCATCTTGCGCTTCCGGGATATCCCTGGGAGCATGCTTGTCGGAGTGTCTGATGACACATCTCGCCCGCGCGCGCCG----GTCGCGTATTAATAATACGAAGTAGTATTAGTATTACGGACGGCTGTTTCGCGCGAGGC-GGACTCTGCGTGGTCCGGAGT-----------CGCGAGACTCCGAGTTC-ACCTAAGGCCATGAAGC---------TCGGTGGTGGTCGCAG-TCACGCTATTTAATCTGCTTGATGGAACAAGCAAGAAGTAGTTACTGTAGTA-GTAGTAATAGTACGTCCTATTAATATTATAGTGTGATCCGGATTGTTGA-CGGCGCCTGCCCCGTCGAAGAGACGGCGCGGC-------CTGGAAACAGC-CCAGG----AGCA-AAATATCCTGCCGGGTGTTCC------GGCG---AAGAAGTC-TCGGAAAGAAGGCAGTTGCGTTGTCTGTT-------GTGTGTCGGATCGTGT-------ACATGTAAGTAGTGTACGTCGTGGTAGTGTTGTTTCGACGGCA-GCCGCACCGAACAGT--CGTCCTT----------TCGGGACACAAGTAGTAAGTACCCAGTCTTTGGAGCCGGGCCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCAGGCG--TTCGCGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGTCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCC-GGCTCCTTCGCGCGTACGGTCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--TCGGTCTCGCTT-CTCCTCCGCCCCTCGGGGCGTTGGTCTGCGTTTCCGCCGTGGCCAGGGCCGGGTAGCGTTGCGGGAGTCTGCGCCTCGGAAGGTAGCCTCTCCTCGGAAGGTGAATACCGTGGCG--TTT-CGTCGCGACGCTGGCCGGTC-CTGACGAAATGGTTTTCTTT Stschapovia_flagellaris ??????????????????????????????????????????????ACGCACCGAAATGCGATAGGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAAACTTTGAACGCATCTTGCGCTTCCGGGATATGCCTGGGAGCATGCTTGTCGGAGTGTCTGTTGACACCACTCGCCCGTCGCCCCCC----CGCCTGT------CAAAGGGAGG------------------GGGAG----CAGCGGGGC-GGACTGTGCGTGTTCCGGAGCGCGC------TCTCGCGCGCTCCGAGTGCACCCAAGCTCGTGAACGAAAATGATATGATGCCTCTTTTCAGCTGTCGCT--------------------------------------------------------------------------------GCACGGAGTTGTTGA-CGGCGC-TCGCCCGAAGTCAAGTACGGGGCGC-------GAACAAACGGC-TAA-------------GTTGCG----GTG----------------------------AGCAAACGGCTTTGG--AGGGGCGAAACATCAATGA-TCTGTACCGA-CTGGCC---------CCCTGGG---GCGCGG--------GCACCCCCCCGCG---------------CCCCTTCCCCGGG--------GGCCCGCCCC---GCCC---TAC------TTTTGT-TCGGACCTCCGATCAAGCAAGAGGACCCGCTGAATTTAAGCATATAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCCAGTAACGGCGAGTGAAGCGGGAAGAGCTCACGTTGTAAATCTGGC--TTTCGGGCCCGAATTGTAGTCTGGAGAGGCGAGGCCAGCCGGCGGCGGGGGCGAAGTCTCTTGGAAAAGAGCATCAAGGAGGGTGACAATCCCGTTCTTGCCCCCTGATTTCGTCGCGCGTACGGTCCGTTTTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTCTG--ACAGTTCCGCTT-CTCCTCCGCCCCTCGGGGCGTTGGTTTGCGTTTCCGTCGTGGCCAGGGCCGGGTAGGGTTGCGGGAGTCTGCGCCTCGGAAGGTAGCTCCTCCTCGGAGAGTGAATACCGTGGCGTGT---CGTCGCGACTCTGGCCGGT-TCTGACGAAATGGTTTTCTTT Tilopteris_mertensii ??????????????????????????????????????????????ACGCAGCGAAATGCGATACGTCATGCGAATTGCAAAACTTAGTGAGTCATCAAAATTTTGAACGCATCTTGCACTTCCG-TTTACGC--GGGAGTATGTCTGTTGGAGTGTCTGTT----CATC---CCCACACCTCTTC------CATTT----------TGGA--------------------------------TGA-GCTGAGGCCGCCGTTGTTCATACTAT---------TTTGATCAACGTGCTTAG----ATGTAACATACCCCGA------ACTCGCCCCTGCTCTGTTGG-AGTA---------AGGAA---AGCGCG-ACGTAG------CCAGATTCC---------TTAGCTGG----AAACTGA------ACCACAACGCGCTGATCCCACTTTGACGCG-----AAGG-AGCCCCG------GTGAGAATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGT-TCGGACCTCCAATCAGTCAAGATTACCCGCTGAATTTAAGCATATAACTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAAGCGGGAATAGCTCAGACTGAAAATCT-------TCGG-----AATTGTAGTCTGGAGAAGCGAAGTCAGCGAAATCCACCGGCAAAGTCTTCTGGAACGGAGCACCAAGGAGGGTGATAGTCCCGTCTATGCCAGGTGGAT---GGA-GCGTACGACTCGCTTTCAATGAGTCGAGTTGTTTGGGATTGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACCTGAAATTGCTGAAATGGAACCGATGGGAGGCAGTGTTGGCGTGCGATCATTTTGGATATCCCGCATGCGGGGTGTTCG--TGTG-----GCCGTGCGCAAGTCAGGCTTTCTTTG-----GTGAGCG----GGAGAGGTCTCAAACCTGTGAGGGTTGAGGGTGC----------CGTCGCTTG-CTGGAGGGACTTTGACGAAATGCCTCTCATC ; END; [ The following blocks are output data for analysis step 2189 ] BEGIN TREES; TITLE Tb6964; LINK TAXA = TaxaForAnalysisStep2189; TREE Fig._8 = [&R] (Saccorhiza_dermatodea,((Saccorhiza_polycides,(((Phaeosiphoniella_phinneyi,Haplospora_globosa),Tilopteris_mertensii),((Halosiphon_tomentosus_ATL,Halosiphon_tomentosus_PAC),Stschapovia_flagellaris))),((Phyllariopsis_brevipes_ssp._brevipes,Phyllariopsis_brevipes_ssp._pseudopurpurascens),Phyllariopsis_purpurascens))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr226] END;