#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 24, 2024; 6:02 GMT TreeBASE (cc) 1994-2008 Study reference: Behr M., & Guerriero G. 2018. Insights into the molecular regulation of monolignol-derived product biosynthesis in the growing hemp hypocotyl. BMC Plant Biology, 18: 1-18. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21799] [ The following blocks are input data for analysis step 21929 ] BEGIN TAXA; TITLE TaxaForAnalysisStep21929; DIMENSIONS NTAX=33; TAXLABELS Arabidopsis_thaliana_AtDIR1.At5g42510 Arabidopsis_thaliana_AtDIR10.At2g28670 Arabidopsis_thaliana_AtDIR11.At1g22900 Arabidopsis_thaliana_AtDIR12.At4g11180 Arabidopsis_thaliana_AtDIR13.At4g11190 Arabidopsis_thaliana_AtDIR14.At4g11210 Arabidopsis_thaliana_AtDIR16.At3g24020 Arabidopsis_thaliana_AtDIR17.CAB67637 Arabidopsis_thaliana_AtDIR18.At4g13580 Arabidopsis_thaliana_AtDIR2.At5g42500 Arabidopsis_thaliana_AtDIR21.At1g65870 Arabidopsis_thaliana_AtDIR23.At2g21100 Arabidopsis_thaliana_AtDIR24.At3g55230 Arabidopsis_thaliana_AtDIR5.At1g64160 Arabidopsis_thaliana_AtDIR6.AT4G23690 Arabidopsis_thaliana_AtDIR9.At2g39430 Cannabis_sativa_CsaDIR6A Cannabis_sativa_CsaDIR6B Cannabis_sativa_CsaDLP1 Cannabis_sativa_CsaDLP2 Cannabis_sativa_CsaDLP20A Cannabis_sativa_CsaDLP20B Cannabis_sativa_CsaDLP3 Cannabis_sativa_CsaDLP4 Cannabis_sativa_CsaDLP5 Forsythia_x_intermedia_Psd_Fi1 Linum_usitatissimum_LuDIR1 Linum_usitatissimum_LuDIR2 Linum_usitatissimum_LuDIR3 Linum_usitatissimum_LuDIR5 Linum_usitatissimum_LuDIR6 'Populus trichocarpa XP_002297997' Schisandra_chinensis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M43332] TITLE Dirigent_protein; LINK TAXA = TaxaForAnalysisStep21929; DIMENSIONS NCHAR=486; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_AtDIR1.At5g42510 ----------------------------------------------------------------------------------------MAKR--------FLLLLP---------------------------------------------------------------------------------------------------------------LLSSILLLAVSVT---AYSTT-----------TPYQ-GYKPE----KFTHLHFYFHDVISGDKPTAVKVAEARPTTTLN---------VKFG---------------------------------------VIMIADDPLTEGPDPSSK------EVGRAQGMYASTAMKDIV-FTMVFNYVFTAGE----FNGSTIAVYGRNDI-FSKVRELPIIGGTGAFRFARGYALPKT--YKIVGL-----------DAVVEYNVFIWH----- Arabidopsis_thaliana_AtDIR10.At2g28670 ---MAGQKILSLLVIALVVTFAAAARLLDEENAFSATTTTLGSGSGSTGIGFGAGTGSSGSGSTGFGFGAGSGSSGSGSTGSGLGAGTGSIPSSGSGPGLLPTASSVPGSLAGGGSGSLPTTGSATGAGAGTGSALGGGPGAGSALGGGAGAGPALGGGAGAGPALGGGAGAGSALGGGGAGAGPALGGGGAGAGPALGGGVAGSGSALGGGASAGPDNTLVFFMHDILGGSNPTARAVTG-----------VVANPALSGQLPFAK-PNGANLPVS-NGVPSNNNNNGIVN-NNNVPFLVGLGGTTANILQNNNNGNN----ILNGFPVASGGQLPSGSALQMLMFGTMTVIDDELTEGHELGSG------LLGKAQGYYVASAIDGTS-QTMAFTAMFESGG-----YEDSISFFGVLRT-AVSESHIGVMGGTGKYVNARGFAILKTFTGSSGTQQNQPHQFTDGLETVVECTVYLSY----- Arabidopsis_thaliana_AtDIR11.At1g22900 ----------------------------------------------------------------------------------------MATP--------FLLLLLPL-------------------------------------------------------------------------------------------------------------IFSTVLLLTITVTQSKPYSKT-----------TPFQ-GNKPD----KLTHLHFYFHDIISGDKPTTIRVAEAPGTNSSA---------TVFG---------------------------------------AVLIVDAPVTEGPELSSK------EVGRAQGLYASTDMKTFG-FTMVFNFVFTEGE----FNGSTAALYGRNPI-LLEERELPIIGGTGDFRFARGYALPKT--YKVVNI-----------DAVVEYNVFIWH----- Arabidopsis_thaliana_AtDIR12.At4g11180 ------------------------------------------------------------------------------------------------------MTNQIY-------------------------------------------------------------------------------------------------------------KQVFSFFLSVLLLQSSTVSYVP----------------KSFD-LKKPCKHFVLYLHNIAYDGD-NAANATAATIVKPLG------LGDHSFG---------------------------------------ELIIINNPVTLDQNYLSK------PVARAQGFYFYNMKTNYN-AWVAWTLVFNSTK----HKG-TFTIMDANPFGLQPARDLSIVGGTGDFLMTRGIATFKTKLTQGSK------------YFCVEMNIKLYECY--- Arabidopsis_thaliana_AtDIR13.At4g11190 ------------------------------------------------------------------------------------------------------MANQIY-------------------------------------------------------------------------------------------------------------IISL-IFLSVLLYQSTTVLSFR----------------QPFN-LAKPCKRFVFYLHNVAYDGD-NTDNATSAAIVNPLG------LGDFSFG---------------------------------------KFVIMDNPVTMDQNMLSE------QVARVQGFFFYHGKTKYD-TWLSWSVVFNSTQ----HKG-ALNIMGENAF-MEPTRDLPVVGGTGDFVMTRGIATFMTDLVEGSK------------YFRVKMDIKLYECYY-- Arabidopsis_thaliana_AtDIR14.At4g11210 ------------------------------------------------------------------------------------------------------MANQIY-------------------------------------------------------------------------------------------------------------LFSL-ICLSVLLCQSYTVSSFQ----------------KSLD-LAKPCKRFVLHLHDIAYDGD-NAANATSAAIVNPLG------LGDFSFG---------------------------------------KFVIMDDPVTMDQNYLSK------PVARVQGFFCYHGKATYD-AWIAWTVVFNSTQ----HKG-AFTIMGENPF-MEPTRDLPIVGGTGDFIMTRGIATLTTDHIDGSK------------YFRVKLDIKLYECYH-- Arabidopsis_thaliana_AtDIR16.At3g24020 ----------------------------------------------------------------------------------------MMIKQS---PFLLLTTILFT--------VAVFVA--ALDPAPE--------------------------------------------------------------------------------------DPIFELYMHDLLGGSSPTARPITG-----------LLGN-IYNGQVPFAK-QIGFTPPENGIAIPNANGALPTVNGINGVPLGTGLSGTAYSG----QNLNG----IQT--QLGPDG-LSLG-------FGTITVIDDILTSGPDLGSQ------PLGKAQGVYVASSADGST-QMMAFTAMLEGGE-----YNDNLNFYGIYRI-GSAMSHLSVTGGTGRFKNACGFAEVRPLIPSG-------QHEVDGAESLLRIIVHLKY----- Arabidopsis_thaliana_AtDIR17.CAB67637 -----------------------------------------MEDTGSIKQEAQSHPPGIFEIPGEPAVVINGVPDEPQTDCMIAKDEPISSGTVGSGEWLEGREVRKF-------------------------------------------------------------------------------------------------------------FLGRYYSGTVTKFDKQSGWYR-----------VEYEDGDSEDLDWSELEEVLLPLDTKNSNTNAQSEYGEAGQRVNVKA---------PYPGHKPEKLVTTT-----------------VKAPYPGHKPEKLIPLVDDILTVGPEITSE------EVGRAQGIFASADQNNFG-LLMAFNFVFTKGE----FSGSTVSMYGRNPI-FSKVREMPIIGGTGAFRFGRGYAQAKTFTFNTTSG-----------NAVVKYNVYIWH----- Arabidopsis_thaliana_AtDIR18.At4g13580 -----------------------------------------------------------------------------------------MMKQS---PFSLLTSIFLI--------AALFTATTALDPAPE--------------------------------------------------------------------------------------DPIFELYMHDILGGSSPTARPITG-----------LLGN-IYNGQVPFAK-QIGFVPPQNGVAIPNANGAMPTVNGINGIPLGTGLSGTAFSG----QNLNG----IQT--QLGPDG-LSLG-------FGTITVIDDIITSGPDLGSQ------PLGKAQGVYVASSADGST-QMMAFTAMLEGGE-----YNDNLNFYGIYRI-GSAMSHLSVTGGTGRFKNACGFAEVRPLIPAG-------QHFVDGAEMLLRIIVHLKY----- Arabidopsis_thaliana_AtDIR2.At5g42500 ----------------------------------------------------------------------------------------MAKR--------FLLLLP---------------------------------------------------------------------------------------------------------------LLSTILLLSVSVTESEAYSTT-----------KPCQ-GYKPD----KFTHLHFYFHDVISGDKPTAVKVAEARRTNSSN---------VNFG---------------------------------------VIMIADDPLTEGPDPSSK------EVGRAQGMYALTAMKNIS-FTMVFNLAFTAGE----FNGSTVAMYGRNEI-FSKVREMPIIGGTGAFRFARGYAQAKT--YKVVGL-----------DAVVEYNVFIWH----- Arabidopsis_thaliana_AtDIR21.At1g65870 ----------------------------------------------------------------------------------------MAS--------LYLLLLLPL-------------------------------------------------------------------------------------------------------------FLALILAATITESKSFSTTVK-----------APYP-GHKPD----KLTHLHFYFHDIVSGDKPTSVQVANGPTTNSSA---------TGFG---------------------------------------LVAVVDDKLTVGPEITSE------EVGRAQGMYASADQNKLG-LLMAFNLVFTKGK----FSDSTVAMYGRNPV-LSKVREMPIIGGTGAFRFGRGYALAKTLVFNITSG-----------DAVVEYNVYIWH----- Arabidopsis_thaliana_AtDIR23.At2g21100 ----------------------------------------------------------------------------------------MAKE----------EYVSRM-------------------------------------------------------------------------------------------------------------LVMLIMIMPLVAQGSRLHSWA----------------NRLEETGKDKVTNLQFYFHDTLSGKNPTAVKVAQGTDTEKSP---------TLFG---------------------------------------AVFMVDDALTETADPKSK------LVGRAQGLYGSSCKEEVG-LIMAMSFCFEDGP----YKDSTISMIGKNSA-MNPIREMPIVGGTGMFRMARGYAIARTNWFDPKTG-----------DAIVGYNVTIMH----- Arabidopsis_thaliana_AtDIR24.At3g55230 MAKALSLTIFLFLLIA---SNVQSARLLDEVQTQPQLVP--QVP----------------------------------------------EEED---DSP--QAVTTT---------PTPIPLPGPATGGP--------------------------------------------------------------------------------------EPILEFFMHDVLGGSHPSARVVTG-----------IVAQTEVNG-IPFSKSSNNIFPVDNAVPLVNANSINNLIN-PNTAPLLTGLSGSQANTVIQNSNGNSQGSLSSNNLPFVTTGQLPPIAALQQLMFGSITVVDDELTEGHELGSA------IIGRAQGFYLASSLDGTS-QTLSLTVLLHEDHDHHDTLDDAISFFGVHRT-ASHASHIAVVGGTGRFEHAKGYAVVETLHNQED------QHVTDGHDTILHFSVYLTYYKA-- Arabidopsis_thaliana_AtDIR5.At1g64160 ------------------------------------------------------------------------------------------------------MVGQMK-------------------------------------------------------------------------------------------------------------SFLF---LFVFLVLTKTVISAR----------------KPSKSQPKPCKNFVLYYHDIMFGVD-DVQNATSAAVTNPPG------LGNFKFG---------------------------------------KLVIFDDPMTIDKNFQSE------PVARAQGFYFYDMKNDYN-AWFAYTLVFNSTQ----HKG-TLNIMGADLM-MVQSRDLSVVGGTGDFFMSRGIVTFETDTFEGAK------------YFRVKMDIKLYECY--- Arabidopsis_thaliana_AtDIR6.AT4G23690 --------------------------------------------------------------------------------------------------MAFLVEKQLF-------------------------------------------------------------------------------------------------------------KALFSFFLLVLLFS-DTVLSFR----------------KTID-QKKPCKHFSFYFHDILYDGD-NVANATSAAIVSPPG------LGNFKFG---------------------------------------KFVIFDGPITMDKNYLSK------PVARAQGFYFYDMKMDFN-SWFSYTLVFNSTE----HKG-TLNIMGADLM-MEPTRDLSVVGGTGDFFMARGIATFVTDLFQGAK------------YFRVKMDIKLYECY--- Arabidopsis_thaliana_AtDIR9.At2g39430 MAKALHITIFLFLISSNLLAFINSARLLDEIQPQPQLVPTGQIPTVAP---------------------------------------TEAEEEDGTDDNPGLATTTTT---------ASAVTVPAGPAEAT--------------------------------------------------------------------------------------EPLLEFFMHDVLGGSHPSARVVTG-----------IVAQTEVNG-IPFSKASNSIFPVDNGVPLVNSNNINSVIN-PNTAPLLTGLGGAQTSTVIQNTNGNSNDALSANSLPFVTAGNLPPGAALQHLMFGTITVVDDELTESHELGSA------VIGRAQGFYLASSLDGTS-QTLSLTVLLHGEHDQHDTLDDAISFFGVHRT-ASHASQIAVIGGTGKFEHAKGYAIVETLHNQDN------QHITDGQDTILHFSVYLT-YKA-- Cannabis_sativa_CsaDIR6A ---------------------------------------------------------------------------------------MMRGDH----------TSQKL-------------------------------------------------------------------------------------------------------------AFSFILLLIIVLASSQSALASK-----------------KPLNEKSPCKRFVLYYHDTLFNGT-DAANATSATVANKTR------LGDFNFG---------------------------------------MLVVFDDPITKDNHLLSP------PVARAQGFFFYDKKNEYN-AWFAFTLVFNSSE----YKG-TLNIMGADLM-PEKTRDLSVVGGTGDFFMARGIVTIETDTLQGDF------------YFRLKMDIKLYECY--- Cannabis_sativa_CsaDIR6B ---------------------------------------------------------------------------------------------------MKSPKPIFL-------------------------------------------------------------------------------------------------------------SLILFFIIIFINDFNNALPQSSSM--------------MKNNKLIKPCKSLVFYFHDIIYNGE-NAKNATSAIVGAPAWGNKTLLAGKNHFG---------------------------------------DLVVFDDPITLDNNLHSA------PVGRAQGFYLYDKKDVFT-AWLGFSFVFNSTE----HKG-SLNFAGADPL-MNKTRDVSVVGGTGDFFMSRGIATLMTDAFEGEV------------YFRLRVHIKLYECWL-- Cannabis_sativa_CsaDLP1 ----------------------------------------------------------------------------------------MAKA--------LQTTTLNL-------------------------------------------------------------------------------------------------------------LISLTILLSFLR-LTTANDD----------YYNSVVQRKHGF-KHEKLTHFHFYFHDTVSGKNPTNVQVAEAPTTNTSA---------TFFG---------------------------------------MVAVLDDPLTVGPEPTSK------QVGRAQGIIAMASLSDVG-LLMSLNYVFTEGK----YNGSCLSILGHNSI-LSALREMPVVGGTGLFRFARGYALAKTYMFNATSH-----------DAIVEYNVYVLHF---- Cannabis_sativa_CsaDLP2 ----------------------------------------------------------------------------------------MEEA--------LISKTQLT-------------------------------------------------------------------------------------------------------------ILSFLLTLTLVFALGKAEDG----------FVRAMDRKLLGL-KKQKFSHFRFYWHDIYSGKNPSALPIIQ-PPKNSSK---------NGFG---------------------------------------VVSMIDDPLTEGPELSSK------LLGKAQGFYGLASQEEIA-LIMAMNFHIMQGK----YNGSTLTILGRNNV-FNKVREMPVIGGSGLFRFASGYAHASTHKFNPSNG-----------DAVVEYNVYVQHY---- Cannabis_sativa_CsaDLP20A --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVIP-PQANYSS---------TSFG---------------------------------------MVAMIDDPLTEGPELSSK------IVGKAQGFYGSASQEEVG-LIMAMNFAFSEGK----YNGSTITILGRNTV-FSKVREMPVIGGSGMFRFARGYVQARTHQFTPSSG-----------DAIVEYNVFVLHY---- Cannabis_sativa_CsaDLP20B ----------------------------------------------------------------------------------------MDKL--------TIQRITPT-------------------------------------------------------------------------------------------------------------FLFLFIFIFIVKTLATATKSDYEFDHKGQIFSRNLSRKKLGLHKAEKVSHLHFYFHDVVVGRNPTTIVVAEGKAMKNSS---------TGFG---------------------------------------FVVMMDDPLTVGPELSSK------QVGRAQGMYGSASQSEWG-LLMVLNYVFTEGK----YNGSTLSILGRNAV-FSEVREMPIVGGSGLFRFARGYAQAKTHKFDLKTG-----------NAVVEYNVYVLHY---- Cannabis_sativa_CsaDLP3 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKNSS---------TGFG---------------------------------------FVVMMDDPLTVGPELSSK------QVGRAQGMYGSASQSEWG-LLMVLNYVFTEGK----YNGSTLSILGRNAV-FSEVREMPIVGGSGLFRFARGYAQAKTHKFDLKTG-----------NAVVEYNVYVLHY---- Cannabis_sativa_CsaDLP4 -----------------------------------------------------------------------------------------MLKSQSVITLLFLTLISVY--------NPILLVAAVVPVGEG--------------------------------------------------------------------------------------EPVLEMYMHDILGGSNPTARPVTG-----------LLGN-IYSSQVPFAK-PIGFKTPDDAVALPNANGAMPTVNGVTGLPLGTGLAGTAFAGNVNNQNTNN----LQS--QLAADG-LGLG-------FGTITVIDDILTTTPELGSQ------QLGKAQGVYVASSADGSK-QLMAFTALMEGGE-----FNDNLNFFGVYTI-GTTLSQLSVTGGTGKFKNAYGIAELRPLIPPG-------QISTDGAETLLRITVHLKY----- Cannabis_sativa_CsaDLP5 ---------------------------------------------------------------------------------------------------MRKDMSKLS-------------------------------------------------------------------------------------------------------------CITLACMILLLIFNQSSSTRTLGN-------SVPNPTRHNYNHNHHKITFLMRDIFNVTTSTKLTSTTTNDLPFSKPLGLIPPKDGVRVPSTESFPQMLSFPG------------LSFPMARATLQELEFGTVTPIEEGIYNSDHSHHHDDSLRVVIGKAQGIYVATSEGGISSHMMALTASFGDGD-----EANGLRFFGVRKK-GVTESHIAVIGGVGKYQGANGYATLKRVNINSQKN--------NGVSKLFKFSVYL------- Forsythia_x_intermedia_Psd_Fi1 ---------------------------------------------------------------------------------------------------MVSKT-QIV-------------------------------------------------------------------------------------------------------------AL----FLCFLTSTSSATYGRK-----------------PRPRR--PCKELVFYFHDVLFKGN-NYHNATSAIVGSPQWGNKTAMAVPFNYG---------------------------------------DLVVFDDPITLDNNLHSP------PVGRAQGMYFYDQKNTYN-AWLGFSFLFNSTK----YVG-TLNFAGADPL-LNKTRDISVIGGTGDFFMARGVATLMTDAFEGDV------------YFRLRVDINLYECW--- Linum_usitatissimum_LuDIR1 ---------------------------------------------------------------------------------------------------MAISR------------------------------------------------------------------------------------------------------------------SNIALFFIFFICLSSANSS-------------------AKKKQHTPCKELVLFFHDIIYNGH-NKANATAAIVAAPEGANRTILAGEFHFG---------------------------------------NIAVFDDPITLDNNLHSP------PVGRAQGMYLYDTKNTFT-AWLGFTFSLNSTE----HQG-TINFMGADPL-MNKTRDVSIVGGTGDFFMHRGVATIMTDSYEGEV------------YFRLRVDMKFYDCW--- Linum_usitatissimum_LuDIR2 ---------------------------------------------------------------------------------------------------MTISR------------------------------------------------------------------------------------------------------------------SKIALFFIFFIYLSSTPSS-------------------AKKKQHAPCKELVLFFHDIIYNGQ-NKANATAAIVAAPEGSNRTILAGESHFG---------------------------------------NIAVFDDPITLDNNLHSP------PVGRAQGMYLYDTKNTFT-AWLGFTFCINSTE----HQG-TINFMGADPL-MNKTRDVSIVGGTGDFFMHRGVATIMTDSYEGDV------------YFRLRVDMKFYECW--- Linum_usitatissimum_LuDIR3 ---------------------------------------------------------------------------------------------------MTISR------------------------------------------------------------------------------------------------------------------SKIALFFIFFIYLSSTSSS-------------------AKKKQHAPCKELVLFFHDIIYNGQ-NKANATAAIVAAPEGSNRTILAGESHFG---------------------------------------NIAVFDDPITLDNNLHSP------PVGRAQGMYLYDTKNTFT-AWLGFTFCLNSTE----HQG-TINFMGADPL-MNKTRDVSIVGGTGDFFMHRGVATIMTDSYEGEV------------YFRLRVDMKFYDCW--- Linum_usitatissimum_LuDIR5 ---------------------------------------------------------------------------------------MKHSSSHSSSCLPFLLTTTTP-------------------------------------------------------------------------------------------------------------IFLLLLSLICPAAATWRTPTHH----------------QHGRNPNKPCKQLVLYYHDILFHGNGDQGNATSAAAANATK------LGDYKFG---------------------------------------MLVVFDDPVTKDGHLKSK------AVARAQGFYFYDMKSTYN-AWFAYTLVFNSTE----HKG-TINIMGADMM-SEKTRDLSVVGGTGDFFMARGIATFRTDTFQGDN------------YFRLEMDIKLYDCYKY- Linum_usitatissimum_LuDIR6 ---------------------------------------------------------------------------------------MKHTSS-----FHFLLTTTTL-------------------------------------------------------------------------------------------------------------IFLLLLSLISPGDATWRTPSHHL---------------QHAKHP-KPCKQLVLYYHDILFHGNGDQGNATSAAAANATK------LGDYKFG---------------------------------------MLVVFDDPVTKDGHLKSK------AVARAQGFYFYDMKSTYN-AWFAYTLVFNSTD----HKG-TLNIMGADMM-SEETRDLSVVGGTGDFFMARGIATFRTDTFQGDA------------YFRLEMDIKLYECY--- 'Populus trichocarpa XP_002297997' ---------------------------------------------------------------------------------------------------MEAKR------------------------------------------------------------------------------------------------------------------LILALFLLFLLSKSSAFPS-------------------RKSRVHKPCKRLVFYFHDIIYNGK-NSKNATAAIVGAPAWGNKTILANQNHFG---------------------------------------DLVVFDDPITLDNNLHSA------PVGRAQGIYVYDKKEIFT-AWLGFSFVFNSTE----HKG-SINFAGADPL-MNKTRDVSVIGGTGDFIMARGIATLMTDAFEGEV------------YFRLRVDIQLYECW--- Schisandra_chinensis ---------------------------------------------------------------------------------------------------MEGRK-LII-------------------------------------------------------------------------------------------------------------TIPLLLFFIAFFSVPPAAFGRKVT--------------LPRKRMPQPCMNLVFYFHDILYNGK-NAANATSAIVGSPAWGNRTILAGQSNFG---------------------------------------DMVVFDDPITLDNNLHSP------PVGRAQGFYFYDRKDVFT-AWLGFSFVFNNSD----YRG-SINFAGADPL-LIKTRDISVIGGTGDFFMARGIATLMTDAFEGEV------------YFRLRTDIKLYECY--- ; END; [ The following blocks are output data for analysis step 21929 ] BEGIN TREES; TITLE Dirigent_protein_Result; LINK TAXA = TaxaForAnalysisStep21929; TREE Dirigent = [&R] ((Cannabis_sativa_CsaDLP5:0.900604,((Arabidopsis_thaliana_AtDIR10.At2g28670:0.485101,(Arabidopsis_thaliana_AtDIR24.At3g55230:0.08703,Arabidopsis_thaliana_AtDIR9.At2g39430:0.106128):0.225097):0.116379,(Cannabis_sativa_CsaDLP4:0.243333,(Arabidopsis_thaliana_AtDIR16.At3g24020:0.051727,Arabidopsis_thaliana_AtDIR18.At4g13580:0.031695):0.122747):0.357823):0.038241):0.3729995,((((Arabidopsis_thaliana_AtDIR17.CAB67637:0.474856,Arabidopsis_thaliana_AtDIR21.At1g65870):0.307999,(Arabidopsis_thaliana_AtDIR11.At1g22900:0.171909,(Arabidopsis_thaliana_AtDIR1.At5g42510:0.084069,Arabidopsis_thaliana_AtDIR2.At5g42500:0.044561):0.121034):0.045106):0.112733,(Arabidopsis_thaliana_AtDIR23.At2g21100:0.416784,(Cannabis_sativa_CsaDLP1:0.25142,((Cannabis_sativa_CsaDLP2,Cannabis_sativa_CsaDLP20B:0.311471):0.22779,(Cannabis_sativa_CsaDLP20A:0.086795,Cannabis_sativa_CsaDLP3):0.214232):0.02947):0.077098):0.035056):0.297544,(((Linum_usitatissimum_LuDIR1:0.032647,(Linum_usitatissimum_LuDIR2:0.010443,Linum_usitatissimum_LuDIR3:0.010818):0.01977):0.229,(Forsythia_x_intermedia_Psd_Fi1:0.214569,(Schisandra_chinensis:0.192313,(Cannabis_sativa_CsaDIR6B:0.154938,'Populus trichocarpa XP_002297997':0.096877):0.051529):0.024447):0.030273):0.148815,((Cannabis_sativa_CsaDIR6A:0.191323,(Linum_usitatissimum_LuDIR5:0.050468,Linum_usitatissimum_LuDIR6:0.036434):0.196567):0.042338,(Arabidopsis_thaliana_AtDIR5.At1g64160:0.170321,(Arabidopsis_thaliana_AtDIR6.AT4G23690:0.174511,(Arabidopsis_thaliana_AtDIR12.At4g11180:0.203936,(Arabidopsis_thaliana_AtDIR13.At4g11190:0.122015,Arabidopsis_thaliana_AtDIR14.At4g11210:0.121636):0.06795):0.150252):0.042328):0.095287):0.093685):0.671285):0.3729995); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr107829] END; BEGIN TREES; TITLE Dirigent_protein_Result; LINK TAXA = TaxaForAnalysisStep21929; TREE thetree = [&R] ((((Linum_usitatissimum_LuDIR1:0.032647,(Linum_usitatissimum_LuDIR2:0.010443,Linum_usitatissimum_LuDIR3:0.010818):0.01977):0.229,(Forsythia_x_intermedia_Psd_Fi1:0.214569,(Schisandra_chinensis:0.192313,(Cannabis_sativa_CsaDIR6B:0.154938,'Populus trichocarpa XP_002297997':0.096877):0.051529):0.024447):0.030273):0.148815,((Cannabis_sativa_CsaDIR6A:0.191323,(Linum_usitatissimum_LuDIR5:0.050468,Linum_usitatissimum_LuDIR6:0.036434):0.196567):0.042338,(Arabidopsis_thaliana_AtDIR5.At1g64160:0.170321,(Arabidopsis_thaliana_AtDIR6.AT4G23690:0.174511,(Arabidopsis_thaliana_AtDIR12.At4g11180:0.203936,(Arabidopsis_thaliana_AtDIR13.At4g11190:0.122015,Arabidopsis_thaliana_AtDIR14.At4g11210:0.121636):0.06795):0.150252):0.042328):0.095287):0.093685):0.3356425,((Cannabis_sativa_CsaDLP5:0.900604,((Arabidopsis_thaliana_AtDIR10.At2g28670:0.485101,(Arabidopsis_thaliana_AtDIR24.At3g55230:0.08703,Arabidopsis_thaliana_AtDIR9.At2g39430:0.106128):0.225097):0.116379,(Cannabis_sativa_CsaDLP4:0.243333,(Arabidopsis_thaliana_AtDIR16.At3g24020:0.051727,Arabidopsis_thaliana_AtDIR18.At4g13580:0.031695):0.122747):0.357823):0.038241):0.745999,(((Arabidopsis_thaliana_AtDIR17.CAB67637:0.474856,Arabidopsis_thaliana_AtDIR21.At1g65870):0.307999,(Arabidopsis_thaliana_AtDIR11.At1g22900:0.171909,(Arabidopsis_thaliana_AtDIR1.At5g42510:0.084069,Arabidopsis_thaliana_AtDIR2.At5g42500:0.044561):0.121034):0.045106):0.112733,(Arabidopsis_thaliana_AtDIR23.At2g21100:0.416784,(Cannabis_sativa_CsaDLP1:0.25142,((Cannabis_sativa_CsaDLP2,Cannabis_sativa_CsaDLP20B:0.311471):0.22779,(Cannabis_sativa_CsaDLP20A:0.086795,Cannabis_sativa_CsaDLP3):0.214232):0.02947):0.077098):0.035056):0.297544):0.3356425); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr107828] END;