#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 15, 2026; 2:24 GMT TreeBASE (cc) 1994-2008 Study reference: Lamichhaney S. 2017. Rapid hybrid speciation in Darwin’s finches. Science, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21803] [ The following blocks are input data for analysis step 21941 ] BEGIN TAXA; TITLE TaxaForAnalysisStep21941; DIMENSIONS NTAX=181; TAXLABELS Cactospiza_heliobates_1 Cactospiza_heliobates_2 Camarhynchus_pallidus_1 Camarhynchus_pallidus_2 Camarhynchus_pallidus_3 Camarhynchus_pallidus_4 Camarhynchus_pallidus_5 Camarhynchus_parvulus_1 Camarhynchus_parvulus_13 Camarhynchus_parvulus_17 Camarhynchus_parvulus_18 Camarhynchus_parvulus_1A Camarhynchus_parvulus_2 Camarhynchus_parvulus_22 Camarhynchus_parvulus_4 Camarhynchus_parvulus_5 Camarhynchus_parvulus_6 Camarhynchus_parvulus_7 Camarhynchus_parvulus_8 Camarhynchus_pauper_1 Camarhynchus_pauper_11 Camarhynchus_pauper_13 Camarhynchus_pauper_15 Camarhynchus_pauper_16 Camarhynchus_pauper_17 Camarhynchus_pauper_19 Camarhynchus_pauper_1A Camarhynchus_pauper_2 Camarhynchus_pauper_2A Camarhynchus_pauper_4 Camarhynchus_pauper_5 Camarhynchus_psittacula_1 Camarhynchus_psittacula_1A Camarhynchus_psittacula_2 Camarhynchus_psittacula_22 Camarhynchus_psittacula_27 Camarhynchus_psittacula_28 Camarhynchus_psittacula_3 Camarhynchus_psittacula_380 Camarhynchus_psittacula_4 Camarhynchus_psittacula_5 Camarhynchus_psittacula_7 Camarhynchus_psittacula_8 Certhidea_fusca_2 Certhidea_fusca_3 Certhidea_fusca_C1 Certhidea_fusca_C10 Certhidea_fusca_C3 Certhidea_fusca_C4 Certhidea_fusca_C5 Certhidea_fusca_C6 Certhidea_fusca_C7 Certhidea_fusca_C8 Certhidea_fusca_C9 Certhidea_fusca_E1 Certhidea_fusca_E10 Certhidea_fusca_E2 Certhidea_fusca_E4 Certhidea_fusca_E5 Certhidea_fusca_E6 Certhidea_fusca_E7 Certhidea_fusca_E8 Certhidea_fusca_E9 Certhidea_olivacea_13 Certhidea_olivacea_14 Certhidea_olivacea_15 Certhidea_olivacea_16 Certhidea_olivacea_20 Geospiza_conirostris_1 Geospiza_conirostris_10 Geospiza_conirostris_2A Geospiza_conirostris_3 Geospiza_conirostris_4 Geospiza_conirostris_5 Geospiza_conirostris_5110 Geospiza_conirostris_6 Geospiza_conirostris_7 Geospiza_conirostris_8 Geospiza_conirostris_9 Geospiza_conirostris_9A Geospiza_conirostris_G1 Geospiza_conirostris_G10 Geospiza_conirostris_G2 Geospiza_conirostris_G3 Geospiza_conirostris_G4 Geospiza_conirostris_G5 Geospiza_conirostris_G6 Geospiza_conirostris_G7 Geospiza_conirostris_G8 Geospiza_difficilis_9 Geospiza_difficilis_D1 Geospiza_difficilis_D3 Geospiza_difficilis_F1 Geospiza_difficilis_F2 Geospiza_difficilis_G101 Geospiza_difficilis_G103 Geospiza_difficilis_G103A Geospiza_difficilis_G108 Geospiza_difficilis_P10 Geospiza_difficilis_P11 Geospiza_difficilis_P17 Geospiza_difficilis_P2 Geospiza_difficilis_P4 Geospiza_difficilis_P5 Geospiza_difficilis_P6 Geospiza_difficilis_P7 Geospiza_difficilis_P9 Geospiza_difficilis_S1 Geospiza_difficilis_S14 Geospiza_difficilis_S15 Geospiza_difficilis_W1 Geospiza_difficilis_W1A Geospiza_difficilis_W2 Geospiza_difficilis_W3 Geospiza_difficilis_W6 Geospiza_difficilis_W7 Geospiza_difficilis_W8 Geospiza_fortis_1 Geospiza_fortis_12 Geospiza_fortis_13 Geospiza_fortis_14 Geospiza_fortis_15 Geospiza_fortis_17 Geospiza_fortis_19 Geospiza_fortis_1O Geospiza_fortis_20 Geospiza_fortis_21 Geospiza_fortis_3 Geospiza_fortis_6 Geospiza_fuliginosa_1 Geospiza_fuliginosa_10 Geospiza_fuliginosa_12 Geospiza_fuliginosa_12A Geospiza_fuliginosa_13 Geospiza_fuliginosa_15 Geospiza_fuliginosa_16 Geospiza_fuliginosa_19 Geospiza_fuliginosa_2 Geospiza_fuliginosa_20 Geospiza_fuliginosa_22 Geospiza_fuliginosa_23 Geospiza_fuliginosa_3 Geospiza_fuliginosa_8 Geospiza_magnirostris_11 Geospiza_magnirostris_2 Geospiza_magnirostris_3 Geospiza_magnirostris_4 Geospiza_magnirostris_7 Geospiza_magnirostris_9287 Geospiza_magnirostris_9309 Geospiza_magnirostris_9379 Geospiza_magnirostris_9387 Geospiza_magnirostris_9398 Geospiza_magnirostris_9703 Geospiza_magnirostris_9709 Geospiza_magnirostris_9737 Geospiza_magnirostris_9773 Geospiza_magnirostris_9779 Geospiza_scandens_19331 Geospiza_scandens_2 Loxigilla_noctis_1 Loxigilla_noctis_2 Loxigilla_noctis_3 Loxigilla_noctis_6 Loxigilla_noctis_7 Pinaroloxias_inornata_1 Pinaroloxias_inornata_2 Pinaroloxias_inornata_3 Pinaroloxias_inornata_4 Pinaroloxias_inornata_5 Pinaroloxias_inornata_6 Pinaroloxias_inornata_7 Pinaroloxias_inornata_8 Platyspiza_crassirostris_15 Platyspiza_crassirostris_16 Platyspiza_crassirostris_4 Platyspiza_crassirostris_7 Platyspiza_crassirostris_9 Tiaris_bicolor_1 Tiaris_bicolor_2 Tiaris_bicolor_3 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M44362] TITLE MPR_version_of_Darwin‘s_finches_tree; LINK TAXA = TaxaForAnalysisStep21941; DIMENSIONS NCHAR=360; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? 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100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011011110001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_5 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011011100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_6 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011011000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_7 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011011111010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_8 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Platyspiza_crassirostris_15 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111110000000000000000000000000000000000000000000000000000000000000000011110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Platyspiza_crassirostris_16 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111110000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Platyspiza_crassirostris_4 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111110000000000000000000000000000000000000000000000000000000000000000011101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Platyspiza_crassirostris_7 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111110000000000000000000000000000000000000000000000000000000000000000011101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Platyspiza_crassirostris_9 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111110000000000000000000000000000000000000000000000000000000000000000011000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Tiaris_bicolor_1 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111111000000000000000000000000000000000000000000000000010000000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Tiaris_bicolor_2 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111111000000000000000000000000000000000000000000000000010000000001101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Tiaris_bicolor_3 100000000000000000001000000000000000000000000000000000001000000000101011100000000000000000000000111111000000000000000000000000000000000000000000000000010000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 ; END; [ The following blocks are output data for analysis step 21941 ] BEGIN TREES; TITLE Rapid_hybrid_speciation_in_Darwin‘s_finches; LINK TAXA = TaxaForAnalysisStep21941; TREE Fig._2A = [&R] 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[! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr109517] END;