#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 22:32 GMT TreeBASE (cc) 1994-2008 Study reference: Worheide G., Nichols S., & Goldberg J. 2004. Intragenomic variation of the rDNA internal transcribed spacers in sponges (Phylum Porifera): implications for phylogenetic studies. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1214] [ The following blocks are input data for analysis step 2197 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2197; DIMENSIONS NTAX=20; TAXLABELS 'Leucaltis clathria 6022-01' 'Leucaltis clathria 6089-PCR' Leucetta_chagosensis_3658 'Leucetta chagosensis 3658-PCR' 'Leucetta chagosensis 3908-01' 'Leucetta chagosensis 3908-PCR' 'Leucetta chagosensis 3946-PCR' 'Leucetta chagosensis 6084-01' 'Leucetta chagosensis 6084-PCR' 'Leucetta chagosensis 6085-PCR' 'Leucetta microraphis 3659-01' 'Leucetta microraphis 3659-03' 'Leucetta microraphis 3659-PCR' 'Leucetta villosa 3662-01' 'Pericharax sp. 3696-01' 'Pericharax sp. 3696-PCR' 'Pericharax sp. 3791-PCR' 'Pericharax sp. 6098-01' 'Pericharax sp. 6098-PCR' 'Pericharax sp. 6099-PCR' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1273] TITLE Leucettidae_ITS; LINK TAXA = TaxaForAnalysisStep2197; DIMENSIONS NCHAR=900; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Leucaltis clathria 6022-01' GGATTGTGGCTACGGGGATTTCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGA-TTCGTGAAAACCTGTAACACACTGTGAACCTGGTCGTGCACTGTGCGC--ACGTCTCCTTTCGGGGTTGCGGCTGCTTGCGGCGGCATTAAATCGTTGTTGGGC-GTTCTTCCCAGTTGAAACACAACTTGATGTTCAGCTGTGCTGACGTCCATCGAGCCCCGCGTGGAGC-TGCGTGC--GTGTACGGATTTTTCACCGCACA-CGACTGC-----------CGGTCGTGTGCACACCCAGTCAACCTTTTTCAAA-CAACGCAAATTTGCAGACTGAACTGTTGGGCTTTTCGTAACGGAAAGCTTGTCTTAATGTTGAAAACATGGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAAACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGTGCTTCGGCGCGGATGTCATGAGGTGTCTGAAAGCCCTCGGAAAC-C-G-TGGCGCT-TAG-CG-------CTGGTTGCCGG-G-CTCTCAGTCCCTTGAAATGCAGTGGCCGAACGTGTTGTGCTGAAGCATGGCTTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGATCTTCATTGAGTCTGTCGTCGTGTTGCAG---TGGCCTGGGCGCACTAGACATCGTGCTTGTCTGCAGCCGTTCGAACAAAGCCAGGCCCTGGA 'Leucaltis clathria 6089-PCR' GGATTGTGGCTACGGGGATTTCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGA-TTCGTGAAAACCTGTAACACACTGTGAACCTGGTCGTGCACTGTGCGC--ACGTCTCCTTTCGGGGTTGCGGCTGCTTGCGGCGGCATTAAATCGTTGTTGGGC-GTTCTTCCCAGTTGAAACACAACTTGATGTTCAGCTGTGCGGACGTCCATCGAGCCCCGCGTGGAGC-TGCGTGC--GTGTACGGATTTTTCACCGCACA-CGACTGC-----------CGGTCGTGTGCACACCCAGTCAACCTTTTTCAAA-CAACGCAAATTTGCAGACTGAACTGTTGGGCTTTTCGTAACGGAAAGCTTGTCTTAATGTTGAAAACATGGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAAACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGTGCTTCGGCGCGGATGTCATGAGGTGTCTGAAAGCCCTCGGAAAC-C-G-TGGCGCT-TAG-CG-------CTGGTTGCCGG-G-CTCTCAGTCCCTTGAAATGCAGTGGCCGAACGTGTTGTGCTGAAGCATGGCTTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGATCTTCATTGAGTCTGTCGTCGTGTTGCAG---TGGCCTGGGCGCACTAGACATCGTGCTTGTCTGCAGCCGTTCGAACAAAGCCAGGCCCTGGA Leucetta_chagosensis_3658 GGATTGTGGCAACGGGGATTTCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGT---------CTCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTCGAACGCGCTTCGGCGCGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTC-CCTTTCAGTCCCTTGAAATGCAGTGGCCGAACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTCTT-------TCTGTCGTTGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta chagosensis 3658-PCR' ----------AACGGGGATTTCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGT---------CTCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTCGAACGCGCTTCGGCGCGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTC-CCTTTCAGTCCCTTGAAATGCAGTGGCCGAACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTCTT-------TCTGTCGTTGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta chagosensis 3908-01' GGATTGTGGCAACGGGGATTTCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGTG---------TCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGCGTCGTTTTCACCTCGAACGCGCTTCGGCGTGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTT-CCTTTCAGTCCCTTGAAATGCAGTGGCCGGACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTTTT-------TCTGTCGTCGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta chagosensis 3908-PCR' ----TGTGGCAACGGGGATTTCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGTG---------TCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGCGTCGTTTTCACCTCGAACGCGCTTCGGCGTGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTT-CCTTTCAGTCCCTTGAAATGCAGTGGCCGGACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTTTT-------TCTGTCGTCGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta chagosensis 3946-PCR' -----------------ATTTCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGT---------CTCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTCGAACGCGCTTCGGCGCGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTC-CCTTTCAGTCCCTTGAAATGCAGTGGCCGAACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTCTT-------TCTGTCGTTGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta chagosensis 6084-01' GGATTGTGGCAACGGGGATTCCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGT---------CTCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTCGAACGCGCTTCGGCGCGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTC-CCTTTCAGTCCCTTGAAATGCAGTGGCCGAACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTCTT-------TCTGTCGTTGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta chagosensis 6084-PCR' ----------AACGGGGATTCCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGT---------CTCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTCGAACGCGCTTCGGCGCGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTC-CCTTTCAGTCCCTTGAAATGCAGTGGCCGAACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTCTT-------TCTGTCGTTGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta chagosensis 6085-PCR' ----------AACGGGGATTCCGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGCGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCCTGC--GTGCGTGGTTGTCTAACCGCACAACCGTTGT---------CTTGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTCGAACGCGCTTCGGCGCGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTC-CCTTTCAGTCCCTTGAAATGCAGTGGCCGAACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTCTT-------TCTGTCGTTGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Leucetta microraphis 3659-01' GGATTGTGGCTACGGGGATTTCGGTCTCTGTTGTTCGCGAAAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTTCAAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGCGCATGTCTCCTTTCGGGGTTGCTGCC-----TGGTGGCATTAAATCGTGCTGCTCTAGCTCCTCTCTTCCGACGGGAGAGTTGA-----GCCAAAGCTGGT-----GCGGGCCCCGTCTGGAGTATGCGTGTTGGTGCGTGGTTTTCTCACCGCACACTCTGCGT------------------GTGCACCTTCG-----TTTTCTTTACA-CTAAGCAAATTTGCAGACAGAACTTGTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTTCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGG{CT}GTCTGAGAGACTGTCTTTGTTTGGTTCGAGCTTTGCTCGTTCTCTTTCGACTGCAGT-GCCTTTCAGTCCCTTAAAATGTAGTGGCCGAACGT--TGTGCCGATGCATGGCTTTGGGTCGGTTCGTCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAGCTGCCG-TAGGGTGCAC------------------------------------------------ 'Leucetta microraphis 3659-03' GGATTGTGGCTACGGGGATTTCGGTCTCTGTTGTTCGCGAAAAGCTGATCAAACCTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTTCAAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGCGCATGTCTCCTTTCGGGGTTGCTGCC-----TGGTGGCATTAAATCGTGCTGCTCTAGCTCCTCTCTTCCGACGGGAGAGTTGA-----GCCAAAGCTGGT-----GCGGGCCCCGTCTGGAGTATGCGTGTTGGTGCGTGGTTTTCTCACCGCACACTCTGCGT------------------GTGCACCTTCG-----TTTTCTTTACA-CTAAGCAAATTTGCAGACAGAACTTGTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTTCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCGCCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGGTGTCTGAGGGACTGTCTTTGTTTGGTTCGAGCTTTGCTCGTTCTCTTTCGACTGCAGT-GCCTTTCAGTCCCTTAAAATGTAGTGGCCGAACGT--TGTGCCGATGCATGGCTTTGGGTCGGTTCGTCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAGCTGCCG-TAGGGTGCAC------------------------------------------------ 'Leucetta microraphis 3659-PCR' ------------CGGGGATTTCGGTCTCTGTTGTTCGCGAAAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTTCAAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGCGCATGTCTCCTTTCGGGGTTGCTGCC-----TGGTGGCATTAAATCGTGCTGCTCTAGCTCCTCTCTTCCGACGGGAGAGTTGA-----GCCAAAGCTGGT-----GCGGGCCCCGTCTGGAGTATGCGTGTTGGTGCGTGGTTTTCTCACCGCACACTCTGCGT------------------GTGCACCTTCG-----TTTTCTTTACA-CTAAGCAAATTTGCAGACAGAACTTGTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTTCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGG{CT}GTCTGAGAGACTGTCTTTGTTTGGTTCGAGCTTTGCTCGTTCTCTTTCGACTGCAGT-GCCTTTCAGTCCCTTAAAATGTAGTGGCCGAACGT--TGTGCCGATGCATGGCTTTGGGTCGGTTCGTCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAGCTGCCG-TAGGGTGCAC------------------------------------------------ 'Leucetta villosa 3662-01' GGATTGTGGCAACGGGGATT{CT}CGGTCTCTGTTGTTTGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTT-AAAACCTTAACACACTGTGAACTTGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCAGCATTAAATCGTGGT----------CGCTTT-------------------------CGAGCGAGT-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTGTCTCACCGCACAACCGTTGT---------CTCGGGC--GTGCACTACG------TGTTTTTCAAA-CCAAGCAAATTTGCAGACCGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCTTAATGATCAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTCGAACGCGCTTCGGCGCGGTGGTCATGAGGCGTCTGAGAGGCTGCCTTCGT---GTTCGAGCTCTAGC--TCGTTCTTCGATTGCCGTC-CCTTTCAGTCCCTTGAAATGCAGTGGCCGAACGT--TGTGCTGAAGCATGACCTCGGGTCGGTTCGCCCCGGATCTGCTCGCACGGCTGATCAGTTCTT-------TCTGTCGTTGTGTTGCAGCAGCTGCTTGGGTGCAC------------------------------------------------ 'Pericharax sp. 3696-01' GGATTGTGGCTACGGAGACTTCGGTCTCTGTTGTTCGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTA-AAAACCTTTACACACTGTGAACTCGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCGGCATTAAATCGTG-TG----A-----ACTCTTCTTCTTCCTCTGTTGA-----AGACGAGCAAGC-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTTTCTCACCGCACCCTGGCCGTGCTTTGCTGCTCGGCCTAGTGCACTTCAA-----TTTTCTTTAAA-CCAAGCAAATTTGCAGACAGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGGCGTCTGAGAGACGAC--T-GC-C--TTCG-----TA-----------TCGATTGCAGTTACTTTTCAGTCCCTTGAAATGTAGTGGCCGAACGT--TGTGCTGAAGCATGGCCTCGGGTCGGTTCGCCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAG---CTGCTTGGGCGCAC------------------------------------------------ 'Pericharax sp. 3696-PCR' ------------CGGAGACTTCGGTCTCTGTTGTTCGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTA-AAAACCTTTACACACTGTGAACTCGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCGGCATTAAATCGTG-TG----A-----ACTCTTCTTCTTCCTCTGTTGA-----AGACGAGCAAGC-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTTTCTCACCGCACCCTGGCCGTGCTTTGCTGCTCGGCCTAGTGCACTTCAA-----TTTTCTTTAAA-CCAAGCAAATTTGCAGACAGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGGCGTCTGAGAGACGAC--T-GC-C--TTCG-----TA-----------TCGATTGCAGTTACTTTTCAGTCCCTTGAAATGTAGTGGCCGAACGT--TGTGCTGAAGCATGGCCTCGGGTCGGTTCGCCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAG---CTGCTTGGGCGCAC------------------------------------------------ 'Pericharax sp. 3791-PCR' ------------------------------------------------------------------AGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTA-AAAACCTTTACACACTGTGAACTCGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCGGCATTAAATCGTG-TG----A-----ACTCTTCTTCTTCCTCTGTTGA-----AGACGAGCAAGC-----TCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTTTCTCACCGCACCCTGGCCGTGCTTTGCTGCTCGGCCTAGTGCACTTCAA-----TTTTCTTTAAA-CCAAGCAAATTTGCAGACAGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGGCGTCTGAGAGACGAC--T-GC-C--TTCG-----TA-----------TCGATTGCAGTTACTTTTCAGTCCCTTGAAATGTAGTGGCCGAACGT--TGTGCTGAAGCATGGCCTCGGGTCGGTTCGCCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAG---CTGCTTGGGCGCAC------------------------------------------------ 'Pericharax sp. 6098-01' GGATTGTGGCTACGGGGACTTCGGTCTCTGTTGTTCGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTA-AAAACCTTTACACACTGTGAACTCGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCGGCATTAAATCGTG-TG----A-----ACTCTTCTTCTTCCTCTGTTGA-----AGACGAGCAAGC-----CCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTTTCTCACCGCACCCTGGCCGTGCTTTGCCGCTCGGCCGAGTGCACTTCAA-----TTTTCTTTAAAACCAAGCAAATTTGCAGACAGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGGCGTCTGAGAGACTAC--T-GC-C--TTCG-----TA-----------TCGATTGCAGTTACTTTTCAGTCCCTTGAAATGTAGTGGCCGAACGT--TGTGCTGAAGCATGGCCTCGGGTCGGTTCGCCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAG---CTGCTTGGGCGCAC------------------------------------------------ 'Pericharax sp. 6098-PCR' -------------------TTCGGTCTCTGTTGTTCGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTA-AAAACCTTTACACACTGTGAACTCGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCGGCATTAAATCGTG-TG----A-----ACTCTTCTTCTTCCTCTGTTGA-----AGACGAGCAAGC-----CCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTTTCTCACCGCACCCTGGCCGTGCTTTGCCGCTCGGCCGAGTGCACTTCAA-----TTTTCTTTAAAACCAAGCAAATTTGCAGACAGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGGCGTCTGAGAGACTAC--T-GC-C--TTCG-----TA-----------TCGATTGCAGTTACTTTTCAGTCCCTTGAAATGTAGTGGCCGAACGT--TGTGCTGAAGCATGGCCTCGGGTCGGTTCGCCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAG---CTGCTTGGGCGCAC------------------------------------------------ 'Pericharax sp. 6099-PCR' -------GGCTACGGGGACTTCGGTCTCTGTTGTTCGCGAGAAGTTGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGAATCCGTA-AAAACCTTTACACACTGTGAACTCGGTCGCGCACCGTGCGC--ATGTCTCCTTTCGGGGTTGCTGCC-----TGGCGGCATTAAATCGTG-TG----A-----ACTCTTCTTCTTCCTCTGTTGA-----AGACGAGCAAGC-----CCGGGCCCCGTCTGGAGTATGCGTGC--GTGCGTGGTTTTCTCACCGCACCCTGGCCGTGCTTTGCCGCTCGGCCGAGTGCACTTCAA-----TTTTCTTTAAAACCAAGCAAATTTGCAGACAGAACT-GTGGGCTTT-C--ATTCGAAAGCTTGTCT-AATGATGAAATCATTGACAACTTTCAACGGTGGATCTCTTGGCTCGTGGATCGATGAAGAACGCAGCAAGACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTGGGTATTCCCAGGAGCATGTCTGTCTCAGTGTCGTTTTCACCTTGAACGCGCTTCGGCGCGGTGGTCTTGAGGCGTCTGAGAGACTAC--T-GC-C--TTCG-----TA-----------TCGATTGCAGTTACTTTTCAGTCCCTTGAAATGTAGTGGCCGAACGT--TGTGCTGAAGCATGGCCTCGGGTCGGTTCGCCCCGGTTCTGCTCGCACGGCTGATCAGTC---------------CGTCGTGTTGCAG---CTGCTTGGGCGCAC------------------------------------------------ ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Leucettidae_ITS) = N: 1-900; CODONPOSSET CodonPositions (CHARACTERS = Leucettidae_ITS) = N: 1-900; END; [ The following blocks are output data for analysis step 2197 ] BEGIN TREES; TITLE Tb6972; LINK TAXA = TaxaForAnalysisStep2197; TREE Fig._1 = [&R] ((((Leucetta_chagosensis_3658,'Leucetta chagosensis 6084-01','Leucetta chagosensis 6084-PCR','Leucetta chagosensis 6085-PCR','Leucetta chagosensis 3658-PCR','Leucetta chagosensis 3946-PCR','Leucetta villosa 3662-01'),('Leucetta chagosensis 3908-01','Leucetta chagosensis 3908-PCR')),(('Leucetta microraphis 3659-01','Leucetta microraphis 3659-03','Leucetta microraphis 3659-PCR'),(('Pericharax sp. 3696-01','Pericharax sp. 3696-PCR','Pericharax sp. 3791-PCR'),('Pericharax sp. 6098-01','Pericharax sp. 6098-PCR','Pericharax sp. 6099-PCR')))),('Leucaltis clathria 6022-01','Leucaltis clathria 6089-PCR')); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1863] END;