#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 04, 2024; 12:25 GMT TreeBASE (cc) 1994-2008 Study reference: Miller A.N., & Huhndorf S. 2004. Using phylogenetic species recognition to delimit species boundaries within Lasiosphaeria. Mycologia, 96(5): 1104-1125. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1223] [ The following blocks are input data for analysis step 2211 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2211; DIMENSIONS NTAX=25; TAXLABELS Cercophora_areolata Cercophora_sparsa Cercophora_sulphurella Lasiosphaeria_glabrata_SMH4617 Lasiosphaeria_glabrata_TL4529 Lasiosphaeria_lanuginosa_AR2148 Lasiosphaeria_lanuginosa_SMH2390 Lasiosphaeria_lanuginosa_SMH3277 Lasiosphaeria_lanuginosa_SMH3819 Lasiosphaeria_lanuginosa_SMH4027 Lasiosphaeria_lanuginosa_SMH4594 Lasiosphaeria_lanuginosa_TL5656 Lasiosphaeria_ovina_CBS958.72 Lasiosphaeria_ovina_K_Robinson_sn Lasiosphaeria_ovina_SMH1538 Lasiosphaeria_ovina_SMH2635 Lasiosphaeria_ovina_SMH2670 Lasiosphaeria_ovina_SMH3286 Lasiosphaeria_ovina_SMH3923 Lasiosphaeria_ovina_SMH4124 Lasiosphaeria_ovina_SMH4605 Lasiosphaeria_rugulosa_SMH1518 Lasiosphaeria_rugulosa_SMH4438 Lasiosphaeria_sorbina_CBS885.85 Lasiosphaeria_sorbina_GJS_L555 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M171] TITLE ITS_rDNA; LINK TAXA = TaxaForAnalysisStep2211; DIMENSIONS NCHAR=634; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 0 1 2 3 4 5 6 7 8 9 B D" MISSING=N GAP= :; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cercophora_areolata NNAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTAAAGAGTTGCAAAACTCCCTTACACCATCGCGAACGCTACCCCGCATCGTTGCTTCGGCGGTCGGGCGGCCCCCCGGGGCCGCCTCTCCGGCCCCCCAC::::GGGGCGCCCGCCGGAGGAGCACAACCAAACCATTGCAACTATTGGCCTCTCTGAGTATGATTTT:::AAA:T:AAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCT::::GCTTGCGTTGGGGTCCTGCG:GCT::GCC:CGCAGGCCCT:GAAAACCAGTGGCGGGCTCGCTAGTCACACCGAGCGCAGTAATAC::ATCTCGCTTTGGG:CGTGCGGCGGG:::TT:CTTGCCGTTAAAC:ACCCCCTTTTTACCAAGGTTGACCTCGGATCAAGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA22D067633146 Cercophora_sparsa NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTTTACC:GTTGCTTCGGCGG:::::::::::::::::::::::::::AG::CCCTCAC:::::GGGCGCCCGCCGGCAGCGC:TA::CAAACTCTTT:TATTACAGGCCTCTCTGAGTA:T::TTATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCCA::GGCTTGCGTTGGGGTCCTGCG:GCT::GCC::GCAGGCCCT:GAAAAACAGTGGCGGGCTCGCT:GTCACACCGAGCGTAGTAATAC::ATCTCGCTTTGG:ACGTGCGGCGGG:::TT:CTTGCCGTTAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA145B70733042 Cercophora_sulphurella GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTTTACC:GTTGCTTCGGCGGGGGG::::::CTCCAGGGCGGAGCCGCAG::CCCTCAC:::::GGGCGCCCGCCGGCAGCAC:TAAACAAACTCTTTATATCCCAGGCCTCTCTGAGTA:T::TTATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCC::GGGCTTGTGTTGGGGCCCTGCG:GTT::GCC::GCAGGCCCTT:AAAAACAGTGGCGGGCTCGCT:GTCACACCGAGCGTAGTAATAC::ATCTCGCTTTGG:ACGTGCGGCGTG:::TTTCTTGCCGTTAAAC:ACCCCCCC:TTCTCAAGGTTGACCTCGAATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA149175943051 Lasiosphaeria_glabrata_SMH4617 NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTGTACC:GTTGCTTCGGCGGGCGG::::::CTCCAGGGCGGAGCCGCAA::CCCTCGC::::GGGGTGCCCGCCGGTGGC:CCAA::T:AACTCT:G:TATTCTTATTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCCC:GGGCCTGTGTTGGGGCTCTGCGCGCTA:GTCGCGCAGGCTCTT:AAAAATAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATCT:TATCTCGCTTCGG:ACGCGTGGCTTGCGCTT::::GCCGTTAAAC:A::CCCCCTTTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA138623555035 Lasiosphaeria_glabrata_TL4529 GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTGTACC:GTTGCTTCGGCGGGCGG::::::CTCCAGGGCGGAGCCGCAA::CCCTCGC::::GGGGTGCCCGCCGGTGGC:CCAA::T:AACTCT:G:TATTCTTATTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCCC:GGGCCTGTGTTGGGGCTCTGCGCGCTA:GTCGCGCAGGCTCTT:AAAAATAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATCT:TATCTCGCTTCGG:ACGCGTGGCTTGCGCTT::::GCCGTTAAAC:A::CCCCCTTTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA138623555035 Lasiosphaeria_lanuginosa_AR2148 NNNNNNNAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCTGGAGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:TCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AGCATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCGCTGCGCGCCA:GCCGCGTAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATACA::TCTCGCTTTGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA054D43103033 Lasiosphaeria_lanuginosa_SMH2390 GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTGAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTTGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCCTTTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA052223101034 Lasiosphaeria_lanuginosa_SMH3277 NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC::::GGGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAATTTC:TGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCA:GGGCCCGTGTTGGGGCACTACGCGCCA:GTCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATACA::TCTCGCTTTGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:ACCCCCCCCTTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA051321203030 Lasiosphaeria_lanuginosa_SMH3819 NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGCGCTCGCCGTAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCTC:GGGCCCGTGTTGGGGCGCTGCGCGCTA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTTGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA050226301032 Lasiosphaeria_lanuginosa_SMH4027 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCTGGAGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGTCGCAAGC:TCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AGCATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCGCTGCGCGCCA:GCCGCGTAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATACA::TCTCGCTTTGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCANNNNNNNNNNNNNNNNN054D43103033 Lasiosphaeria_lanuginosa_SMH4594 NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACACA::TCTCGCTTAGG:ACGCGCGGCGGGCGCCT::::GCCGTAAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA050223100012 Lasiosphaeria_lanuginosa_TL5656 GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCTAGC:CCAA::T:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AATATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACACA::TCTCGCTTCGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA050533100032 Lasiosphaeria_ovina_CBS958.72 NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05322310103B Lasiosphaeria_ovina_K_Robinson_sn NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05322310103B Lasiosphaeria_ovina_SMH1538 NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039 Lasiosphaeria_ovina_SMH2635 NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039 Lasiosphaeria_ovina_SMH2670 NNNNNNNAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039 Lasiosphaeria_ovina_SMH3286 GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039 Lasiosphaeria_ovina_SMH3923 GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAANNNNNNNNNNNNNNNNNNNN053223101039 Lasiosphaeria_ovina_SMH4124 GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039 Lasiosphaeria_ovina_SMH4605 NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05322310103B Lasiosphaeria_rugulosa_SMH1518 NNNNGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATAACAGAGTTGCAAGACTCC:T:AAACCATCGCGAAC:CTACCCGTACCCGTTGCTTCGGCGGGCGG::::::CCCCTCTCGGGCGCCGCAG::CTCCCCTCGCGGGGGCGCCCGCCGGCAGC:CCC:::TAGACTCT:GAAT:CACTGGTATCTCTGAGTA:A:AAAATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCC:TCTGGGCCCGTGTTGGGGCTCTGTGCGCTA:GCTGTGCAGGCCCTC:AAAACTAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATATAAATCTCGCTCAGG:TCGCGTGGCGGGCGCT::::AGCCGTAAAAC:A:CC:CTACTCCACAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA317808404427 Lasiosphaeria_rugulosa_SMH4438 NNNNNNNAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCGAGACTCCC::AAACCATCGCGAAC:CTACCCATACCCGTTGCTTCGGCGGGCGG::::::CCCCTATCGGGCGCCGCAG::CCCC:CTCGCGGGGGCGCCCGCCGGCAGC:CCC:::TAAACCCT:GAAT:CGCGGGCATCTCTGAGTA:A:GAC::ACAAA:C:GAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCCCGGGCCCGTGTTGGGGCGCTGCGCGCTG:GCCGCGCAGGCCCTC:AAAATTAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAGTGTATATCTCGCTT:GGGTCGCGGAGCGGGCGCC::::GGCCGTAAAAC:A:CCTC:AC::CTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA006712806308 Lasiosphaeria_sorbina_CBS885.85 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAAGACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA:::GAACTCT:GAATTTC:TGGCATCTCTGAGTGTGTGGCATGCAAAATGAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCAGTCGGGCCCCG:GCGCCCGTGTTGGGGCACTGCGCGCCAAGCCGCGCAGGCCCTCTGAAACCAGTGGCGGGCTCGCC:GTCGCACCGAGCGCAGTAACGCA::TCTCGCTCAGGG:CGCGCGGCGGGCGCTT::::GCCGTAAAACGACCCTCTCCTCCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATNNNNNNNNNN05048402213D Lasiosphaeria_sorbina_GJS_L555 NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAGACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGGGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTGAC:::::GGGTGCCCGCCGCAAGC:CCGA::C:AACTCT:GAATTTC:TGGCATCTCTGAGTA:T:AGCATGCAAA:T:GAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCA:TCAGGCCCCA:GGGCCCGTGTTGGGGCGCTGCGCGCCA:GCCGCGCAGGCCCTC:GAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTGAACGA:ATCTCGCTCAGGGGCGCGCGGGGGGCGCCT::::GCCGTAAAAC:ACCCCCCCCTTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05B951117210 ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-634; CODONPOSSET CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-634; END; [ The following blocks are output data for analysis step 2211 ] BEGIN TREES; TITLE Tb6986; LINK TAXA = TaxaForAnalysisStep2211; TREE Fig._1 = [&R] (Lasiosphaeria_ovina_K_Robinson_sn,(Lasiosphaeria_ovina_SMH4605,Lasiosphaeria_ovina_CBS958.72,((Lasiosphaeria_ovina_SMH2670,Lasiosphaeria_ovina_SMH2635,Lasiosphaeria_ovina_SMH3286,Lasiosphaeria_ovina_SMH4124,Lasiosphaeria_ovina_SMH3923,Lasiosphaeria_ovina_SMH1538),(Lasiosphaeria_lanuginosa_SMH4594,(((Lasiosphaeria_lanuginosa_SMH3819,(Lasiosphaeria_lanuginosa_SMH4027,Lasiosphaeria_lanuginosa_AR2148)),(Lasiosphaeria_lanuginosa_TL5656,((Lasiosphaeria_rugulosa_SMH1518,Lasiosphaeria_rugulosa_SMH4438),((Lasiosphaeria_glabrata_TL4529,Lasiosphaeria_glabrata_SMH4617),((Cercophora_sparsa,Cercophora_sulphurella),Cercophora_areolata)))),(Lasiosphaeria_lanuginosa_SMH3277,(Lasiosphaeria_sorbina_GJS_L555,Lasiosphaeria_sorbina_CBS885.85))),Lasiosphaeria_lanuginosa_SMH2390))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1878] END;