#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 14, 2025; 8:16 GMT TreeBASE (cc) 1994-2008 Study reference: Oda T., Tanaka C., & Tsuda M. 2004. Molecular phylogeny and biogeography of the widely distributed Amanita species, A. muscaria and A. pantherina. Mycological Research, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1224] [ The following blocks are input data for analysis step 2217 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2217; DIMENSIONS NTAX=48; TAXLABELS Amanita_aff_muscaria Amanita_ibotengutake Amanita_melleiceps Amanita_muscaria_30961CBM Amanita_muscaria_30962CBM Amanita_muscaria_30963CBM Amanita_muscaria_30964CBM Amanita_muscaria_30965CBM Amanita_muscaria_30976CBM Amanita_muscaria_30977CBM Amanita_muscaria_30978CBM Amanita_muscaria_30981CBM Amanita_muscaria_30982CBM Amanita_muscaria_30985CBM Amanita_muscaria_30987CBM Amanita_muscaria_31445K Amanita_muscaria_31452K Amanita_muscaria_45785NY Amanita_muscaria_45820NY Amanita_muscaria_45840NY Amanita_muscaria_45843NY Amanita_muscaria_45863NY Amanita_muscaria_80048K Amanita_muscaria_alba Amanita_muscaria_formosa_44761SFSU Amanita_muscaria_formosa_45060SFSU Amanita_muscaria_formosa_45883NY Amanita_muscaria_regalis_1539O Amanita_muscaria_regalis_4220O Amanita_muscaria_regalis_506O Amanita_pantherina_15998CBM Amanita_pantherina_30956CBM Amanita_pantherina_30957CBM Amanita_pantherina_30958CBM Amanita_pantherina_30959CBM Amanita_pantherina_30960CBM Amanita_pantherina_30984CBM Amanita_pantherina_31408K Amanita_pantherina_4490TNS Amanita_pantherina_4491TNS Amanita_pantherina_4492TNS Amanita_pantherina_45927NY Amanita_pantherina_45929NY Amanita_pantherina_61495K Amanita_pantherina_79855K Amanita_pseudoorphyria Amanita_rubrovolvata taxon_48 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1290] TITLE rDNA_ITS; LINK TAXA = TaxaForAnalysisStep2217; DIMENSIONS NCHAR=792; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX Amanita_aff_muscaria Amanita_ibotengutake Amanita_melleiceps Amanita_muscaria_30961CBM Amanita_muscaria_30962CBM Amanita_muscaria_30963CBM Amanita_muscaria_30964CBM Amanita_muscaria_30965CBM Amanita_muscaria_30976CBM Amanita_muscaria_30977CBM Amanita_muscaria_30978CBM Amanita_muscaria_30981CBM Amanita_muscaria_30982CBM Amanita_muscaria_30985CBM Amanita_muscaria_30987CBM Amanita_muscaria_31445K Amanita_muscaria_31452K Amanita_muscaria_45785NY Amanita_muscaria_45820NY Amanita_muscaria_45840NY Amanita_muscaria_45843NY Amanita_muscaria_45863NY Amanita_muscaria_80048K Amanita_muscaria_alba Amanita_muscaria_formosa_44761SFSU Amanita_muscaria_formosa_45060SFSU Amanita_muscaria_formosa_45883NY Amanita_muscaria_regalis_1539O Amanita_muscaria_regalis_4220O Amanita_muscaria_regalis_506O Amanita_pantherina_15998CBM Amanita_pantherina_30956CBM Amanita_pantherina_30957CBM Amanita_pantherina_30958CBM Amanita_pantherina_30959CBM Amanita_pantherina_30960CBM Amanita_pantherina_30984CBM Amanita_pantherina_31408K Amanita_pantherina_4490TNS Amanita_pantherina_4491TNS Amanita_pantherina_4492TNS Amanita_pantherina_45927NY Amanita_pantherina_45929NY Amanita_pantherina_61495K Amanita_pantherina_79855K Amanita_pseudoorphyria Amanita_rubrovolvata taxon_48 ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = rDNA_ITS) = N: 1-792; CODONPOSSET CodonPositions (CHARACTERS = rDNA_ITS) = N: 1-792; END; [ The following blocks are output data for analysis step 2217 ] BEGIN TREES; TITLE Tb6992; LINK TAXA = TaxaForAnalysisStep2217; TREE Fig._1 = [&R] (((((Amanita_ibotengutake,(Amanita_melleiceps,(Amanita_rubrovolvata,Amanita_sinensis))),(((((Amanita_muscaria_45843NY,Amanita_muscaria_45785NY,Amanita_muscaria_formosa_45883NY,((Amanita_muscaria_45863NY,Amanita_muscaria_formosa_44761SFSU),(Amanita_muscaria_alba,Amanita_muscaria_formosa_45060SFSU))),(Amanita_muscaria_45820NY,Amanita_muscaria_45840NY)),((Amanita_muscaria_regalis_506O,Amanita_muscaria_regalis_4220O),Amanita_muscaria_regalis_1539O,Amanita_muscaria_30978CBM,Amanita_muscaria_30981CBM,Amanita_muscaria_30982CBM)),((Amanita_muscaria_30961CBM,Amanita_muscaria_30962CBM,Amanita_muscaria_30963CBM,Amanita_muscaria_30976CBM,Amanita_muscaria_30977CBM,Amanita_muscaria_30985CBM,(Amanita_muscaria_30965CBM,Amanita_muscaria_31452K),Amanita_muscaria_31445K),(Amanita_muscaria_30987CBM,Amanita_muscaria_30964CBM,Amanita_muscaria_80048K))),Amanita_aff_muscaria)),((((Amanita_pantherina_15998CBM,Amanita_pantherina_30959CBM,(Amanita_pantherina_30960CBM,Amanita_pantherina_30957CBM,Amanita_pantherina_30958CBM),Amanita_pantherina_30956CBM),Amanita_pantherina_4490TNS,Amanita_pantherina_4491TNS,Amanita_pantherina_4492TNS),(Amanita_pantherina_31408K,(Amanita_pantherina_79855K,Amanita_pantherina_61495K))),(Amanita_pantherina_30984CBM,Amanita_pantherina_45929NY,Amanita_pantherina_45927NY))),Amanita_concentrica),Amanita_pseudoorphyria); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1881] END;