#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 04, 2024; 13:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Tanaka E., & Honda Y. 2017. Teleomorph-anamorph connection of Macalpinomyces spermophorus
with Pseudozyma tsukubaensis and corresponding erythritol production. Mycoscience,
58(6): 445-451.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S20616]

[ The following blocks are input data for analysis step 22459 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep22459;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Macalpinomyce_spermophorus_LC214953
            Macalpinomyce_spermophorus_LC214954
            Macalpinomyce_spermophorus_LC214955
            Pseudozyma_alboarmeniaca_AB117961
            Pseudozyma_thailandica_AB089354
            Pseudozyma_tsukubaensis_AB089372
            Pseudozyma_tsukubaensis_AB550281
            Pseudozyma_tsukubaensis_AB550282
            Pseudozyma_tsukubaensis_AB550283
            Pseudozyma_tsukubaensis_AB550284
            Pseudozyma_tsukubaensis_AB855769
            Ustilago_austro_africana_AY740061
            Ustilago_spermophora_AY740171
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M45809]

	TITLE Macalpinomyces_alignment;
	LINK TAXA = TaxaForAnalysisStep22459;
	DIMENSIONS NCHAR=655;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650     ]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Macalpinomyce_spermophorus_LC214953     GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTT---AACGAAGAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Macalpinomyce_spermophorus_LC214954     GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTTTC-AACGAAGAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Macalpinomyce_spermophorus_LC214955     GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTTT--AACGAAGAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_alboarmeniaca_AB117961       GATGAAAACCTTTTT--CTTGAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCCATTT--AACACGGTTGCATCGGTTGG-CCTGTCAAACAGCG-CGCAA--------G-CGT-CTGAGCGACGGAC-CGACACACAACAC-AAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGTCTAAATCTAAAAA-CAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGCCCGCTTTCTTCTTT---G-TGAGAAGGTGGACGGATCGGTATTGAGGATCTT-----GCCATTTACCATGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTTGCATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGTGAAGAGAGGGTG-TAGGCTGGACGCAACGACTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_thailandica_AB089354         GATGAAAACCTTTTTTTCTTGAGGTGTGGCTCGCACCTGTCCAACTAAAAT-GAGCTACCTTTTTTTAACACGGTTGCATCGGTTGG-CTTGTCAAATAGTG-C-CT---------G--GCACTAGGAGGCGG-CT-GACACACAACACAAAAACACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTATGATGGAACTCGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACATCGACTTTTTTCTCTT--GG-AAAAAAGGAGGTGGATCGGTATTGAGGATTT------GCCATTCACCATGGCTTCCTCGAAAAGCATTAGCGCATCCATTTGATAGGCAAGACGGACGAAAGCATGCATTTTTGCCTTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGAAGGCAAGGTGGCAAGCTGGACGCAACGACTTGCTGTTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_tsukubaensis_AB089372        GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTT----AACGAAGAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGAC?GACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_tsukubaensis_AB550281        GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTTTTTAACGAAAAGGGGGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGGGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAAACGGACAAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAAAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_tsukubaensis_AB550282        GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTTTTTAACGAAAAGGGGGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGGGGCTTCCTCGAAAAGCATTAGCGCATCCTTTCAATAGGCAAAACGGACAAAAGCTCGAATTT-CCCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAAAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_tsukubaensis_AB550283        GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTT---AACGAAAAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_tsukubaensis_AB550284        GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTT---AACGAAAAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Pseudozyma_tsukubaensis_AB855769        GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTTT--AACGAAGAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Ustilago_austro_africana_AY740061       GATGAAAACCTTTTTTTCT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTTC-AACACGGTTGCATCGGTTGGGCCTGTCAAGCGGCGTCGCTTTTTTTTTGAGCACGCTGGGAGACGGTCTCGACACTTTACAC-AAA-CACTTTTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAACAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGGCAGCTTTTTTC------A-CGAAAAG-TTGGCGGATCGGTAGTGAGGATTTTTTTTTGCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTTGATAGGCAAGACGGACGAAAGCTCGAATTTTCGCCCTCATCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
Ustilago_spermophora_AY740171           GATGAAAACCTTTTTT-CT-GAGGTGTGGCTCGCACCTGTCTAACTAAACTTGAGCTACCTTTTT--AACACGGTTGCATCGGTTGGGCCTGTCAAACAGTG-CAATT--------A-CGCGCTGGGAGACGGTCTCGACACTTTTAACCAAA-CACTATTGATGATCTAGGATTTGAATGAAGTTCATTTTTACGATGGAAC-CGACTGGTAATGCGGTCGACTAAATCTAAAAAACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACACCTTTTTTTTTT---AACGAAGAGGGTGACGGATCGGTATTGAGGATTTTT----GCCATTCACCGTGGCTTCCTCGAAAAGCATTAGCGCATCCATTCAATAGGCAAGACGGACGAAAGCTCGAATTT-CGCCCTGTTCTTCCCTGCCGGGTTTTGATAATATCAGGACTTCGGAGGCGGAGAGAGGGTT-CAAGCTGGACGCAACGTTTTGCTGGTTGGAGTGCTTCTAACCCCGCCCAT-
;
END;

[ The following blocks are output data for analysis step 22459 ]
BEGIN TREES;
      TITLE Macalpinomyces;
      LINK TAXA = TaxaForAnalysisStep22459;
      TREE Fig._2 = [&R] ((((((((Ustilago_spermophora_AY740171:0.0,((Macalpinomyce_spermophorus_LC214955:0.0015886496687224408,Macalpinomyce_spermophorus_LC214953:5.61209094161437E-6):7.35336443664805E-6,Macalpinomyce_spermophorus_LC214954:0.0015875514266031805):6.78138430936187E-6):1.001083640428217E-5,Pseudozyma_tsukubaensis_AB855769):1.707821077728719E-5,Pseudozyma_tsukubaensis_AB089372):0.0016359272274113672,Pseudozyma_tsukubaensis_AB550283):6.051477434891573E-5,Pseudozyma_tsukubaensis_AB550284):3.4718399017360775E-4,(Pseudozyma_tsukubaensis_AB550281:0.0032110252501969102,Pseudozyma_tsukubaensis_AB550282):0.007810085746837732):0.014168116766987232,Ustilago_austro_africana_AY740061:0.01687294965504442):0.01155932122898723,(Pseudozyma_alboarmeniaca_AB117961:0.04097777284864293,Pseudozyma_thailandica_AB089354:0.03151402364189268):0.01155932122898723):0.0;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr111632]


END;