#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on January 11, 2026; 19:18 GMT TreeBASE (cc) 1994-2008 Study reference: Lennox C., Serdani M., Groenewald J.Z., & Crous P.W. 2004. Prosopidicola mexicana gen. et. sp. nov., causing a new pod disease of Prosopis species. Studies in Mycology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1236] [ The following blocks are input data for analysis step 2246 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2246; DIMENSIONS NTAX=24; TAXLABELS Aureobasidium_pullulans Coniothyrium_leucospermi Coniothyrium_palmarum Cryphonectria_cubensis_AF265654 Cryphonectria_cubensis_AF265657 Cryphonectria_macrospora Cryphonectria_parasitica Diaporthe_helianthi Diaporthe_meridionalis Diaporthe_phaseolorum_AF001016 Diaporthe_phaseolorum_AF001028 Dothidea_insculpta Endothia_gyrosa_AF368324 Endothia_gyrosa_AF368326 Hormonema_dematioides Hormonema_macrosporum Kabatina_juniperi Kabatina_thujae Leucostoma_persoonii Phaeosphaeria_nodorum Phaeosphaeria_vagans Prosopidicola_mexicana_CBS_113529 Prosopidicola_mexicana_CBS_113530 Sydowia_polyspora ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2752] TITLE ITS_data; LINK TAXA = TaxaForAnalysisStep2246; DIMENSIONS NCHAR=662; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aureobasidium_pullulans --------------------AGGGTCTTCAT-GGCCCGA-CCTCCAACCCTC-TGTTGTTAAAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGTTTCGGT-CTCCGA----GCGC-----------------ACTAACCCT------------------------CGG--GT--TGGT--GAGCGCCCGCCAGA-GTCCAACC----AAACTCT-TGTA-TTAAACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ATCGCTTGGTATT-GGGAA-CGGTCC-----GTCG-AAAG-GCGGG--CCTTCCTCGAAGA-CCTC-GGCGGGGTT-CAA-CCAACTTCGGGC-GTAGTAGAGTT-------AAATC-GAACGTCTT-ATAAGC-TTGGTCGGATCTCATTGCCGTTAAA-CCTTTATATT---TTCTAGGTTGACCTCGGATCA?G Coniothyrium_leucospermi AGGATCATTAAA---GAGTTAGGGTCCTAGT-GGCCCAA-CCTCCAACCCTC-TGTTGTTAAAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGT-TCGGT-CTCCGA----GCGC-----------------GTTAACCTC------------------------CGG--GT--TGGC--GAGCGCCCGCCAGA-GTCCAACC----AAACTCT-TGTA-TTAAACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ACTGCTTGGTGTT-GGGCA-TCGTCC-----GTCG-AAAG-GCGGG--CGTGCCTCGAAGA-CCTC-GGCGGGGTTTCT--TCAACTTCGGGC-GTAGTAGAGTT-------AAATC-AAACGTCTT-ATAAGC-TTGGTGAGATCTCATTGCCGTTAAA-CCTTTT-AT----TTC-AGGTTGACCTCGGATCAGG Coniothyrium_palmarum AGGATCATTA-ACTATATCTCGGGGGGCCGGACCC--AAGGTG-CGAGCGTACACGGCGTTTAACC----AC-GCT--------------GTGGCATTCGACATTTT-------GA--CCCGCCCTGTCT----GAAT----------ATATACCCCTGTT---TATTGCGTAC-TACTT---GTTTCCTTGGTGGGCTTGCCCGCCAAAAGGAC-ACCTATAAAAC-CT-CTTGT---AAT---T-GC-AGTCAGCGTCAGAA-----AAAC----TTAA-T-AATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACC-CTCAAGC-----TTTGCTTGGTGTT-GGGTGTTTGTCCC----GT-GTTA-T-GCGTG--GACTCGCCTTAAAGCGATTGGCAGCCGGCATATTGGCCGTGGAGCAGCAGTA---------------CATTCAGCTCTCTACACC---ATAAAGTTGGCA---TCCATCAAGTCTATAC-ATT---TGCT--CTTGACCTCGGATCAGG Cryphonectria_cubensis_AF265654 --------------------------------------C-CCAGATACCCTT-TGT-G----AACTTAT-ACCTTTTT---------ATCGTTGCCTCGGCGCCGA--GCC--GGGAGTGCTCTTCTG-TGCT-------------------CCCCCACC--------------GCGCAA---GC-AG--TGGA--GCAGGCCCGCCGGC-GGCCCACC---AAAACTCTTTGTTTTT-AGAACGTATCTCTTCTGAGTG-TTTA----TAACAAAACAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGCA--CTACCT----GTT-CACA--GCGGG--TAGGCCCTGAAATTTAGT-GGCG-GGCTCGCTAAGA-CTCTGAGC-GTAGT--AGTTTTT------ATCACCTCGCTTT-GGAAGG-ATTAGCGGT-GCTCTTGCCG-TAAAACC---------------------------------- Cryphonectria_cubensis_AF265657 --------------------------------------C-CCAGATACCCTT-TGT-G----AACTTAT-ACCTTTTT---------ATCGTTGCCTCGGCGCCGA--GCC--GGGAGTGCTCTTCTG-TGCT-------------------CCCCCACC--------------GCGCAA---GC-AG--TGGA--GCAGGCCCGCCGGC-GGCCCACC----AAACTCTTTGTTTTT-AGAACGTATCTCTTCTGAGTG-TTTA----TAAC-AAACAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGCA--CTACCT----GTT-CACA--GCGGG--TAGGCCCTGAAATTTAGT-GGCG-GGCTCGCTAAGA-CTCTGAGC-GTAGT--AGTTTTT------ATCACCTCGCTTT-GGAAGG-ATTAGCGGT-GCTCTTGCCG-TAAAACC---------------------------------- Cryphonectria_macrospora --------------------------------------C-CCAGATACCCTT-TGT-G----AACTCAT-ACCATTTT---------ATCGTTGCCTCGGCGCTGA--GCCCCGGGGGGGATTTTTGAGAG-AG----------TCTCTCTCTCCTTCCTTCTCGCCTTCTACCGTGCAAACGGTTGTT--GGA--GCAGGCCCGCCGGC-GGCCCACC----AAACTCTTTGTTTTT-ATAACCTATCTCTTCTGAGTA--CAT----TTAAAAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGTA--CTACCC----GT---CAA--ACGG---TAGGCCCTGAAATTTAGT-GGCG-GGCTCGCTAAGA-CTCTGAGC-GTAGT--AGTTTTTT------CAACCTCGCTTT-GGAAGG-ATTAGCGGTTGCTCTTGCCG-TAAAACC---------------------------------- Cryphonectria_parasitica --------------------------------------C-CCAGATACCCTT-TGT-G----AACTTATAACCATTTT---------ATCGTTGCCTCGGCGCTGA--GCCCGGGGGGGGGTTGGCGAAGGCAGATTTTCTTCCTTCTCCCCTCCCTCCCCCCCCTCTTCCACCGTGCAAACGGTTGTTGGGGA--GCAGGCCCGCCGGC-GGCCCACT----AAACTCTTTGTTTTT-ATAACCTATCTCTTCTGAGTA--CAT----AAACAAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----TTGGCTTGGTGTTGGGGTA--CTACCC----GT---AAA--ACGG---TAGGCCCTGAAATTTAGT-GGCG-GGCTCGCTAAGA-CTCTGAGC-GTAGT--AGTTTTTTTTTCTTCAACCTCGCTTT-GGAAGG-ATTAGCGGTTGCTCTTGCCG-TAAAACC---------------------------------- Diaporthe_helianthi -GGATCATTGCT--GGAACGC-GCCTC-----GGCGCAC-CCAGAAACCCTT-TGT-G----AACTTAT-ACCTA------------TCTGTTGCCTCGGCGAAG---GCC--GGCCTCCCCACCG-A-GG---------------------CCCCT------------------------TGGGAACA-AGGA--GCAG-CCCGCCGGC-GGCCAACC----AAACTCT-TGTTTCTTAG--TGAA---TCTCTGAGTA-AAAA----AAAC---ATAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGATGGGGCA--CTGCTT----C-CG-A----GAGGGAGCAGGCCCTGAAATCTAGT-GGCG-AGCTCGCCAGGA-CCCCGAGC-GTAGT--AGTT--------ATAT--CTCGCTCC-GGAAGGCCCTGGCGGT-GCCC-TGCCGTTAAA-CCCCCAACTTC--TGAAAATTTGACCTCGGATCAGG Diaporthe_meridionalis -GGATCATTGCT--GGAACGC-GCCCCA----GGCGCAC-CCAGAAACCCTT-TGT-G----AACTCAT-ACCTT------------ACTGTTGCCTCGGCGCAG---GCC--GGCCCCCCCA-GG-G-GG---------------------CCCCT------------------------CGGATACT-ATGA--GCAGGCCCGCCGGC-GGCCAAGC----CAACTCT-TGTTTTT-ACACCGAA---ACTCTGAGCA--AA-----AAAC---ACAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGCA--CTGCCT----GT---A----GAAGG-GCAGGCCCTGAAATCTAGT-GGCG-GGCTCGCCAGGA-CCCCGAGC-GCAGT--AGTT--------AAAC-CCTCGCTCG-GG-AGGCCCTGGCGGT-GCCC-TGCCGTTAAA-CCCCCAACTTC--TGAAAATTTGACCTCGGATCAGG Diaporthe_phaseolorum_AF001016 -GGATCATTGCT--GGAACGC-GCCCCA----GGCGCAC-CCAGAAACCCTT-TGT-G----AACTCAT-ACCTT------------ACTGTTGCCTCGGCGCAG---GCC--GGCCCCCCCA-GG-G-GG---------------------CCCCT------------------------CGGAGACG-AGGA--GCAGGCCCGCCGGC-GGCCAAGC----CAACTCT-TGTTTTT-ACACCGAA---ACTCTGAGCA--AA-----AAAC---ACAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGCA--CTGCCT----GT---A----GAAGG-GCAGGCCCTGAAATCTAGT-GGCG-GGCTCGCCAGGA-CCCCGAGC-GCAGT--AGTT--------AAAC-CCTCGCTCG-GG-AGGCCCTGGCGGT-GCCC-TGCCGTTAAA-CCCCCAACTTC--TGAAAATTTGACCTCGGATCAGG Diaporthe_phaseolorum_AF001028 -GGATCATTGCT--GGAACGC-GCCCCA----GGCGCAC-CCAGAAACCCTT-TGT-G----AACTTAT-ACCTT------------ACTGTTGCCTCGGCGCAG---GCC--GGCCCCCT-AC-G-G-GG---------------------CCCCT------------------------TGGCGACA-AGGA--GCAGGCCCGCCGGC-GGCCAAGT----TAACTC--TGTTTTT-ACACTGAA---ACTCTGAGCA--CA-----AAAC---ATAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGCA--CTGCCT----C-CT-C----GCGGGGGCAGGCCCTGAAATACAGT-GGCG-AGCTCGCCAGGA-CTCCGAGC-GCAGT--AGTT--------AAAC-CCTCGTTCT-GGAAGG-CCTGGCGGT-GCCC-TGCCGTTAAA-CCCCCAACTCC--TGAAAATTTGACCTCGGATCAGG Dothidea_insculpta ---------------GAGTGACTAACCG--T-CCTCCGA-CTTCCAACCCTC-TGTTGTTATAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGT-TCGGTCCTCCGA----GCGC-----------------ACCAGTCTT------------------------CGG--AC--AGGT--GAGTGCCCGCCAGA-GTCCAACC----AAACTCT-TGTTTTT-AACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ACTGCTTGGTATT-GGGCA-TCGTCC-----GTCG-AAAG-GCGGG--CGTGCCTCGAAGA-CCTC-GGCGGGGTTTCT--CCAACTTCGGGC-GTAGTAGAGTT-------AAATC-GAACGTCTT-ATAAGC-TTGGTGGGACTCCATTGCCGTTAAA-CCTTTT-ATT---TTCTAGGTTGACCTCGGAT---- Endothia_gyrosa_AF368324 --------------------------------------C-CCAGATACCCTT-TGT-G----AACTTAT-ACCATTTT---------ATCGTTGCCTCGGCGCTGA--GCT--GGGGGCACTCTCCTG-TGCC-------------------CCCCCACC--------------GTGCAA---GC-GG--TGGA--GCAGGCCCGCCGGC-GGCCCACC----AAACTCTTTGTTTTT-AGACCGTATCTCCTCTGAGTG-TTTA----CAA--AAACAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGCA--CTACCT----GT---ACA--ACGG---TAGGCCCTGAAATTTAGT-GGCG-GGCTCGCTAAGA-CTCTGAGC-GTAGT--AGTTT--------ATCACCTCGCTTT-GGAAGG-ATTAGCGGT-GCTCTTGCCG-TAAAACC---------------------------------- Endothia_gyrosa_AF368326 --------------------------------------C-CCAGATACCCTT-TGT-G----AACTTAT-ACCATTTT---------ATCGTTGCCTCGGCGCTGA--GCT--GGGGGCACTCTCCTG-TGCC-------------------CCCCCACC--------------GTGCAA---GC-GG--TGGA--GCAGGCCCGCCGGC-GGCCCACC----AAACTCTTTGTTTTT-AGACCGTATCTCCTCTGAGTG-TTTA----CAA--AAACAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTGGCTTGGTGTTGGGGCA--CTACCT----GT---ACA--ACGG---TAGGCCCTGAAATTTAGT-GGCG-GGCTCGCTAAGA-CTCTGAGC-GTAGT--AGTTT--------ATCACCTCGCTTT-GGAAGG-ATTAGCGGT-GCTCTTGCCG-TAAAACC---------------------------------- Hormonema_dematioides AGGATCATTAAA---GAGATAGGGTCTTCAT-GGCCCGA-CCTCCAACCCTC-TGTTGTTAAAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGTCTCGGT-CTCCGA----GCGC-----------------ACTAACCCT------------------------CGG--GT--TGGT--GAGCGCCCGCCAGA-GTCCAACC----AAACTCT-TGTA-TTAAACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ATCGCTTGGTATT-GGGAA-CGGTCC-----GTCG-CAAG-GCGGG--CCTTCCTCGAAGA-CCTC-GGCGGGGTTCCAA-CCAACTTCGGGC-GTAGTAGAGTT-------AAATC-GAACGTCTT-ATAAGC-TTGGTCGGATCTCATTGCCGTTAAA-CCTTTAAATT---TTCTAGGTTGACCTCGGATCAGG Hormonema_macrosporum ---ATCATTAAA---GAGATAGGGTCTTCAC-GGCCCGA-CCTCCAACCCTC-TGTTGTTAAAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGTCTCGGT-CTCCGA----GCGC-----------------ACTAACCCT------------------------CGG--GT--TGGT--GAGCGCCCGCCAGA-GTCCAACC----AAACTCT-TGTA-TTAAACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ATCGCTTGGTATT-GGGAA-CGGTCC-----GTCG-AAAG-GCGGG--CCTTCCTCGAAGA-CCTC-GGCGGGGTT-CAA-CCAACTTCGGGC-GTAGTAGAGTT-------AAATC-GAACGTCTT-ACAAGC-TTGGTCGGATCTCATTGCCGTTAAA-CCTTTAAATT---TTCTAGGTTGACC---------- Kabatina_juniperi -----CATTAAA---GAGTTAGGGTCCTAGT-GGCCCAA-CCTCCAACCCTC-TGTTGTTAAAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGT-TCGGT-CTCCGA----GCGC-----------------GTTAACCTT------------------------CGG--GT--TGGC--GAGCGCCCGCCAGA-GTCCAACC----AAACTCT-TGTA-TTAAACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ACTGCTTGGTATT-GGGCA-TCGTCC-----GTCG-AAAG-GCGGG--CGTGCCTCGAAGAACCTC-GGCGGGGTTTTT--CCAACTTCGGGC-GTAGTAAAGTT-------AAATCAAAACGTCTT-ATAAGC-TTGGTGAGATCTCATTGCCGTTAAA-CCTTTT-ATTT--TTC-AGGTTGACCTCGGAT---- Kabatina_thujae -----CATTAAA---GAGATAGGGTCCTAGT-GGCCCAA-CCTCCAACCCTC-TGTTGTTATAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGT-TCGGT-CTCCGA----GCGC-----------------ACCAGTCTT------------------------CGG--AC--AGGT--GAGCGCCCGCCGGA-GTCCAACC----AAACTCT-TGTTTTTAAACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ACTGCTTGGTATT-GGGCACTCGTCC-----GCCG-CAAG-GCGGG--CGTGCCTCGAAGA-CCTC-GGCGGGGTTTCA--TCAACTTCGGGC-GTAGTAGAGTT-------AAATC-GAACGTCTT-ATAAGC-TTGGTGAGATCTCATTGCCGTTAAA-CCCTTTTATTT--TTC-AGGTTGACCTCGGATCAGG Leucostoma_persoonii -GGATCATTGCT--GGAA-GC-GCCGCAA---GGTGCAC-CCAGAAACCCTT-TGT-G----AACTTAT-ACC-----TAT------ATCGTTGCCTCGGCGCCGGCCGCC--TCTCCC-TCGTGGA-GGGGG-------------------CCCCCTCCTGGTCGT--AAAAA--GCCA--GG--GG--AGGACAGCAGGCCCGCCGGT-GGCCTACT----AAACTCT-TGTTTTT-ATTGAGTAA-AATC-TGAGTAA---------GCTT-C-TAAA-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCAGAGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGC-----CTAGCTTGGTGTTGGGGCA--TTACCTGACTGTTT-ACAG-AAGGG--TAAGCCCTGAAATTTAGT-GGCG-AGCTCGCCAGGA-CTCCGAGC-GCAGT--AGTT--------AAAC-CCTCGCTTT-GGATAGTACTGGCGCG-GCCC-TGCCG-TAAAACCCCCAACTTC--TGAAAATTTGAC----------- Phaeosphaeria_nodorum -----CATTACACT-CAG-TAGTTT--ACTACTGTAA--------AAGGG----GCTGT---TAG-----TC-TGT--------------ATAGCG-CAA-GCTGAT-------GA-GCAGCTGGCCTCTT---TT------------ATCCACCCTTGTC---TTTTGCGTAC--CCAC---GTTTCCTCGGCAGGCTTGCCTGCCGGTTGGACAAA-TTTATAAC-CT-TTTT----AATT--T-TC-AATCAGCGTCTGAA-----AAAC----TTAA-T-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACC-CTCAAGC-----TCTGCTTGGTGTT-GGGTGTTTGTCCT----CTCCCTAGT-GTTTG--GACTCGCCTTAAAATAATTGGCAGCCAGTGTTTTGGTATTGAAGC-GCAGCA---------------CAAGTCGCGATTCGTAAC----AAACACTTGCG---TCCAC-AAG-CCTTTT-T-----AACT--TTTGACCTCGGATCAGG Phaeosphaeria_vagans -----CATTACATT-CAG-TAGCTT--GCTACTGGTCG------GGAGGC----GCTGT---AAC-----TC-CGC--------------ATAGTATTAATT-TACT-------GA-TGAGCGGCAGGCCCTCTGT------------CTGTACCCTTGTC---TTTTGCGCAC--TCAT---GTTTCCTCGGCGGGCTTGCCCGCCGATTGGACAAA-ACTATAAC-CT-TTTT----AATT--T-TC-AATCAGCGTCTGAAA----AAAC----TTAA-T-AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACC-CTCAAGC-----TCTGCTTGGTGTT-GGGTGTTTGTCCT----CTCCTTTGC-GTTTG--GACTCGCCTTAAAGCAATTGGCAGCCAGTGTTTTGGTATTGAAGC-GCAGCA---------------CATTTTGCGATTCTAGCC--GATAATACTTGCG---TCCAT-AAG-CCTTTT-TT----AACT--TTTGACCTCGGATCAGG Prosopidicola_mexicana_CBS_113529 -GGATCATTGCT--GGAAGGC-GCCGCCCCGCGGCGCGCCCCAGACACCCTT-TGT-G----AACTTATGATTCTCGACCCGAGAATATCGTTGCCTCGGCGC-G---GCC--CGGGGGGTTTCGGCCCTGAA-------------------CCCCTCCCCGTCCCG-GTAC----TCCC--GG---G--CGGA--GCAGGCCCGCCGGC-GGCCCTAT----AGACTCT-TGTTTTTCAG--CGT--CTCCTCTGAGTTTTTTTTT-ACCACAAAACAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGCCCCCCGGGGCCTGGTGTTGGGGCG--CTGCCT----CTTTTACCCCGAGG---CAGGCCCCGAAATCGAGT-GGCG-GGCTCGCCAGGA-CTCCGAGC-GTAGT--AGTCTG-------ACCACCTCGCTTT-GGACCGTACTGGCGCG-GCCC-TGCCG-TAAAACCGTCTCTGACCTCGTAGAGTTGACCTCGGATCAGG Prosopidicola_mexicana_CBS_113530 -GGATCATTGCT--GGAAGGC-GCCGCCCCGCGGCGCGCCCCAGACACCCTT-TGT-G----AACTTATGATTCTCGACCCGAGAATATCGTTGCCTCGGCGC-G---GCC--CGGGGGGTTTCGGCCCTGAA-------------------CCCCTCCCCGTCCCG-GTAC----TCCC--GG---G--CGGA--GCAGGCCCGCCGGC-GGCCCTAT----AGACTCT-TGTTTTTCAG--CGT--CTCCTCTGAGTTTTTTTTTTACCACAAAACAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACC-CTCAAGCCCCCCGGGGCCTGGTGTTGGGGCG--CTGCCT----CTTTTACCCCGAGG---CAGGCCCCGAAATCGAGT-GGCG-GGCTCGCCAGGA-CTCCGAGC-GTAGT--AGTCTG-------ACCACCTCGCTTT-GGACCGTACTGGCGCG-GCCC-TGCCG-TAAAACCGTCTCTGACCTCGTAGAGTTGACCTCGGATCAGG Sydowia_polyspora ---ATCATTAAA---GAGATAGGGTCTTCAT-GGCCCGA-CCTCCAACCCTC-TGTTGTTAAAACT----ACCTT---------------GTTGCTTTGGCGG-GACCGTCTCGGT-CTCCGA----GCGC-----------------ACTAACCCT------------------------CGG--GT--TGGT--GAGCGCCCGCCAGA-GTCCAACC----AAACTCT-TGTA-TTAAACCAGT----CGTCTGAGTA-TAA-----AATT---TTAAT-TAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTAC-ACCACTCAAGC-----ATCGCTTGGTATT-GGGAA-CGGTCC-----GTCG-CAAG-GCGGG--CCTTCCTCGAAGA-CCTC-GGCGGGGTT-CAA-CCAACTTCGGGC-GTAGTAGAGTT-------AAATC-GAACGTCTT-ATAAGC-TTGGTCGGATCTCATTGCCGTCAAA-CCTTTAAATT---TTCTAGGTTGACC---------- ; END; BEGIN SETS; CHARSET its (CHARACTERS = ITS_data) = 39-628; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_data) = N: 1-662; CODONPOSSET CodonPositions (CHARACTERS = ITS_data) = N: 1-662; END; [ The following blocks are output data for analysis step 2246 ] BEGIN TREES; TITLE Tb7021; LINK TAXA = TaxaForAnalysisStep2246; TREE Fig._3 = [&R] ((((Leucostoma_persoonii,((Prosopidicola_mexicana_CBS_113529,Prosopidicola_mexicana_CBS_113530)Prosopidicola_mexicana,(((Cryphonectria_cubensis_AF265657,Cryphonectria_cubensis_AF265654)Cryphonectria_cubensis,(Endothia_gyrosa_AF368326,Endothia_gyrosa_AF368324)Endothia_gyrosa),(Cryphonectria_parasitica,Cryphonectria_macrospora)Cryphonectria))),(Diaporthe_helianthi,(Diaporthe_phaseolorum_AF001028,(Diaporthe_meridionalis,Diaporthe_phaseolorum_AF001016)))Diaporthe),(Dothidea_insculpta,(Kabatina_thujae,((Coniothyrium_leucospermi,Kabatina_juniperi),(Hormonema_macrosporum,Aureobasidium_pullulans,(Hormonema_dematioides,Sydowia_polyspora)))))),(Coniothyrium_palmarum,(Phaeosphaeria_vagans,Phaeosphaeria_nodorum)Phaeosphaeria)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1910] END;