#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 08, 2026; 3:41 GMT TreeBASE (cc) 1994-2008 Study reference: Jia J., & Li X. 2018. MADS-box family genes in sheepgrass and their involvement in abiotic stress responses. BMC Plant Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22364] [ The following blocks are input data for analysis step 22570 ] BEGIN TAXA; TITLE TaxaForAnalysisStep22570; DIMENSIONS NTAX=46; TAXLABELS Aegilops_tauschii_subsp._tauschii 'Aegilops tauschii subsp. tauschii_B' 'Arabidopsis thaliana AG12_like_N' 'Arabidopsis thaliana AGL22_SVP_N' 'Arabidopsis thaliana AP3_NP_1910' 'Arabidopsis thaliana PI_NP_19752' 'Arabidopsis thaliana SEP1_NP_568' 'Brachypodium distachyon AGL14_li' 'Hordeum vulgare APETALA3_like_AA' 'Hordeum vulgare PISTILLATA_like' 'Hordeum vulgare WM16_ACB45307.1' 'Hordeum vulgare WM29B_ACB45306.1' Leymus_chinensis_LcMADS1 Leymus_chinensis_LcMADS10 Leymus_chinensis_LcMADS11 Leymus_chinensis_LcMADS2 Leymus_chinensis_LcMADS3 Leymus_chinensis_LcMADS4 Leymus_chinensis_LcMADS5 Leymus_chinensis_LcMADS6 Leymus_chinensis_LcMADS7 Leymus_chinensis_LcMADS8 Leymus_chinensis_LcMADS9 'Oryza sativa OsMADS14_P0C5B1.1' 'Oryza sativa OsMADS16_Q944S9.2' 'Oryza sativa OsMADS18_Q0D4T4.1' 'Oryza sativa OsMADS22_Q9XJ66.1' 'Oryza sativa OsMADS26_A2YQK9.2' 'Oryza sativa OsMADS2_Q40702.1' 'Oryza sativa OsMADS32_Q8S151.1' 'Oryza sativa OsMADS4_Q40703.3' 'Oryza sativa OsMADS55_AAQ23144.2' 'Oryza sativa OsMADS58_BAE54300.1' 'Oryza sativa OsMADS5_A2Y9P0.1' 'Oryza sativa OsMADS65_Q9XJ61.1' 'Triticum aestivum AP1_AAO72630.1' 'Triticum aestivum APETALA3_like' 'Triticum aestivum PISTILLATA_lik' 'Triticum aestivum PISTILLATA_lik2' 'Triticum aestivum TaAGL10_ABF579' 'Triticum aestivum TaAGL11_ABF579' 'Triticum aestivum TaAGL14_ABF579' 'Triticum aestivum TaAGL25_ABF579' 'Triticum aestivum TaAGL32_ABF579' 'Triticum aestivum TaAGL42_ABF579' 'Triticum aestivum TaAGL8_ABF5794' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M45070] TITLE 'MADS-box family'; LINK TAXA = TaxaForAnalysisStep22570; DIMENSIONS NCHAR=303; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aegilops_tauschii_subsp._tauschii -MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAR-ELSVLCDADIGIIIFSAHGKLYDL--ATTG----TMDGLIERYKSASGEGMTGDGC----GDQR-------------------VDPKQEAMVLKQEIDLLQKGLRYIYGNRANEHMNVDELNALERYLEIWMFNIRSAKMQIMIQEIQALKSK-----EGMLKAANEILQEKIVEQH-GLIDVGMTIADQQNGHFS-------------------TVPMLEEITNPLTILSGYSTCRGSEMGYSF?---------------------- 'Aegilops tauschii subsp. tauschii_B' -MGRGKIEIKRIENSSNRQVTFAKRRAGLVKKAR-EIGVLCDAEVGVVIFSSAGKLYDFWTPKTT-----LPRILEKYQTNSGKILWDEKHKS---------------------------ISAEIDRVKKENDNMQIELRHMKGEDVNSLQ-PKELIAIEEALTNGQTNLRDKMMDHWKMH----RRN-----EKMLEEEHKLLALRMHQQD-DLSSGMREMELGYHQG--------------------------RDFTSQMPFTFRLQPSHPNLQEDK?----------------------- 'Arabidopsis thaliana AG12_like_N' -MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAK-ELSVLCDAEIGVVIFSPQGKLFEL--ATKG----TMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPP---------------NLDPKDEINVLKQEIEMLQKGISYMFGG-GDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNK-----EGVLKNTNKYLLEKIEENNNSILDANFAVMETN-------------------------------YSYPLTMPS--------EI-FQF----------------------- 'Arabidopsis thaliana AGL22_SVP_N' MARE-KIQIRKIDNATARQVTFSKRRRGLFKKAE-ELSVLCDADVALIIFSSTGKLFEFCS-S-S-----MKEVLERHNLQSKNLEKLD-QPSLELQ---------------------LVENSDHARMSKEIADKSHRLRQMRGEELQGLD-IEELQQLEKALETGLTRVIETKSDKIMSEISELQKK-----GMQLMDENKRLRQQGTQLTEENERLGMQICNNVHA-------------HGGAESENAAVYEEGQSSESITNAGNSTGAP--VDSESSDTSLRLGLPYGG----------- 'Arabidopsis thaliana AP3_NP_1910' -MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAH-ELTVLCDARVSIIMFSSSNKLHEYISPNTT-----TKEIVDLYQTISDVDVWATQYER---------------------------MQETKRKLLETNRNLRTQIKQRLGECLDELD-IQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKK-----NKSQQDIQKNLIHELELRAEDPHYGLVDN--GGDYDSV-------------------LGYQIEGSRAYALRFHQNHHHYYPNHGLHAPSASDIITFHLLE---------- 'Arabidopsis thaliana PI_NP_19752' -MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAK-EITVLCDAKVALIIFASNGKMIDYCCPSMD-----LGAMLDQYQKLSGKKLWDAKHEN---------------------------LSNEIDRIKKENDSLQLELRHLKGEDIQSLN-LKNLMAVEHAIEHGLDKVRDHQMEILISK----RRN-----EKMMAEEQRQLTFQLQQQEMAIASNARGMMMRDHDG---------------------------------QFGYRVQPIQPNLQEKIMSLVID------------------ 'Arabidopsis thaliana SEP1_NP_568' -MGRGRVELKRIENKINRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSNRGKLYEFCS-SSN-----MLKTLDRYQKCSYGS--IEVNNKPAKE--------------------LENSYREYLKLKGRYENLQRQQRNLLGEDLGPLN-SKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNK-----EQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGG--------EQNVTYAHHQAQSQGLYQPLECNPTLQMG-YDNPVCSEQITATTQAQAQQGNGYIPGWML------- 'Brachypodium distachyon AGL14_li' MVRRGRVELRRIEDRTSRQVRFSKRRSGLFKKAF-ELALLCDAEVALLVFSPAGKLYEYSS-SLS-----IEGTYDRYQQFAGAVRNTY-------------------------------QGGASTSNDEDPSNLQSRLREITAWSVHNN--------------------ADNADASNLEKLEKLLTD-----A------KRALAKQNSNRS-----------------------------------------ATGENSNGPTGE--GGNA?------------------------------- 'Hordeum vulgare APETALA3_like_AA' -MGRGKIEIKRIENATNRQVTYSKRRSGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSTGTD-----IKGIFDRYQQAIGTSLWIEQYEN---------------------------MQRTLSHLKDINRNLRTEIRQRMGEDLDALE-FEELRGLEQNVDAALKEVRQRKYHVITTQTETYKKK-----VKHSQEAYKNLQQELGMR-EDPAYGFVDNPAAGGWDGV-------------------AAVAMGGGSAADMYAFRVVPSQPNLHGMAYGGSHDLRHLRLG----------- 'Hordeum vulgare PISTILLATA_like' -MGRGKIEIKRIENQSNRQVTFSKRKNGILKKAK-EISVLCDAEVGVVVFSSAGKLYDFCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGLTSLHEKQMEHYDRL----MKH-----GKMLEDENKLLAFKVHQHDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQEDT?----------------------- 'Hordeum vulgare WM16_ACB45307.1' -MGRGRSEIKRIDNPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYQYLAPTAP----SVKEFVERYEAATHTKVWSDIR-----QER----------------------RAELEKVAKMCDLLEKELRFMTVDDGEQYT-VPSLAALEHNLEAAMHKVRSEKDRKIGGEMTYLENM---------IRGKQAERYGLCDKLAHAQSLKVAEGGSTS------------------------------LNNGLDLKLGFN---------------------------------- 'Hordeum vulgare WM29B_ACB45306.1' MG-RGRIEIKRIENTTNRQVTFCKRRNGLLKKAY-ELSVLCDAEVALVVFSSRGRLYEY--SNN-----SVKATIERYKKANSDTSNSGTVAEVNAQYY----------------------QQESSKLRQQISSLQNSNSRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKR-----EMELHNDNIYLRSKVSENERGQQPMNMMASGSTSSEYD-------------------HMVAPYDSRNFLQVNMQQQQHYSQQLQPTALQLGQQYFN?------------- Leymus_chinensis_LcMADS1 -MGRGKVQLKRIENKINRQVTFSKRRSGVLKKAH-EISVLCDAEVGLIIFSTKGKLYEFST-ESC-----MDKILERYERYSYAEK--VLASSESEI--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLDSLN-LKELQQLEQQLESSLKHIRSRKNQLMHESISELQKK-----ERSLQEENKVLQKELVEKQKAQ------AAQQDQ--------------TQPQTSSSSS-FMMRNAPPAANTSTHPAAAG-ERTEDAAVQPQAPARPGLPPWMVSHING?- Leymus_chinensis_LcMADS10 -MGRGRSEIKRIDNPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYQYLAPTVP----SVKEFVERYEAATHTKVWSDIR-----QER----------------------RAELEKVAKMCDLLEKELRFMTVDDGEQYT-VPSLAALEHNLEAAMHKVRSEKDRKIGGEMTYLENM---------IRGKQAERYGLCDKLAHAQSLKVVEGGSTS------------------------------LNNGLDLKLGFN?--------------------------------- Leymus_chinensis_LcMADS11 -MARGKVQLRRIENSVHRQVTFCKCRAGLLKKSQGALRPLRRRHWHHHLLCTR-QAHDL--ATTG----TMDGLIERYKSANGEGMTADGR----GDQR-------------------VDPKQEAMVLKQEIDLLQKGLRYIYGNRANEHMNVDELNALERYLEIWMFNIRSAKMQIMIQEIQALKSK-----EGMLKAANEILQEKIVEQH-GLIDVGMTIADQQNGHFS-------------------TVPLIEEITNPLTILSGYSTCRGSEMGYSF?---------------------- Leymus_chinensis_LcMADS2 -MGRGPVQLRRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVALIVFSTKGKLYEYSSQDSS-----MDVILERYQRYSFEER--AVLDPSIGD--------------------QANWGDEYISLKIKLDALQKSQRQLLGEQLDPLT-TKELQQLEQQLDSSLKHIRSRKNQLLFESISELRKK-----EKSLKDQNGVLQKHLVEIEKEKNNGLSNIHHREQLNGATNIHHQEQLNGATTSSPSPTPATAEDSMATPNIGPYQSRE--GGDPEPQPSPAQANNSNLPPWMLRTISNR? Leymus_chinensis_LcMADS3 -MGRGKIEIKRIENQSNRQVTFSKRKNGILKKAK-EISVLCDAEVGVVIFSSAGKLYDFCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGLTSLHEKQMEHYDRL----MKH-----GKMLEDENKLLAFKVHQHDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQEDS?----------------------- Leymus_chinensis_LcMADS4 -MGRGKIEIKRIENATNRQVTYSKRRSGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSTGTD-----IKGIFDRYQQAIGTSLWIEQYGN---------------------------MQRTLSHLKDINRNLRTEIRQRMGEDLDALE-FEELRDLEQNVDAALKEVRQRKYHVITTQTETYKKK-----VKHSQEAYKNLQQELGMR-EDPAYGFVDNPAAGGWDGV-------------------AAVAMGGGSAADMYAFRVVPSQPNLHGMAYGGSHDLR---LG?---------- Leymus_chinensis_LcMADS5 -MGRGKIEIKRIENSSNRQVTFAKRRAGLVKKAR-EIGVLCDAEVGVVIFSSAGKLYDFWTPKTT-----LPRILEKYQTNSGKILWDEKHKS---------------------------ISAEIDRVKKENDNMQIELRHMKGEDVNSLQ-PKELIAIEEALTNGQTNLRDKMMEHWKMH----RRN-----EKMLEEEHKLLALRMHQQDVELSSGMREMELGYHQG--------------------------RDFTSQMPFTFRVQPSHPNLQEDK?----------------------- Leymus_chinensis_LcMADS6 MG-RGRIEIKRIENTTNRQVTFCKRRNGLLKKAY-ELSVLCDAEVALIVFSSRGRLYEY--SNN-----SVKATIERYKKANSDTSNSGTVAEVNAQYY----------------------QQESSKLRQQISSLQNSN-RSLVRDSVSTMTLRDLKQLEGRLEKGISKIRARKNELMYAEVEYMQKR-----EMELHNDNIYLRCKVSENERGQQPMNMMASGSTSSEYD-------------------HMVPPYDSRNFLQANIMQFTHAR?----------------------------- Leymus_chinensis_LcMADS7 -MGRGKVELKRIDNKISRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSSRGRLFEFST-SSC-----MYKTLERYRSCNFNS---EATATPETE--------------------LNN-YQEYLKLKTRVEFLQTTQRNLLGEDLGPLS-MKELEQLENQIEISLKQIRSTKSQQSLDQLFELKRK-----EQQLQDVNKDLRKKIQETSAESVFQMS---CQDVG--------PSG------HANQQELFHPAACDPSLRMG-YHQNFLDQLNKE?------------------------ Leymus_chinensis_LcMADS8 MARRGRVELRRIEDRTSRQVRFSKRRAGLFKKAF-ELSLLCDAEVALLVFSPAGKLYEYSS-S-S-----IEGTYDRYQQFAVPGRNLD-------------------------------QEDATVSNNEDPSNMQSRLSEIAAWSLDNN--------------------ADDSDASSLEKLEKLLKD-----ALRITESKKTLAKQNSGGS-----------------------------------------TSGESSNGPRGQENGRKA?------------------------------- Leymus_chinensis_LcMADS9 MARE-RREIKRIESAAARQVTFSKRRRGLFKKAE-ELSVLCDADVALIVFSSTGKLSQFAS-S-S-----MNEIIDKYSTHSKNLGKTD-QPTLDLN----------------------LEHSKYANLNDQLAEASLRLRQMRGEELEGLS-VDELQQLEKNLETGLHRVVQTKDQQFLEQINELDRK-----SSQLAEENMKLRNQVAQVP----TVGKQVVA---------------------DTEN-VIAEDGQSSESVMTALHSGSSQ--DNDDGSDVSLKLGLPCAPCK?-------- 'Oryza sativa OsMADS14_P0C5B1.1' -MGRGKVQLKRIENTINRQVTFSKRRSGLLKKAN-EISVLCDAEVALIIFSTKGKLYKYAT-DSC-----MDKILERYERYSYAEK--VLISAESDT--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLN-LKELQQLEQQLENSLKHIRSRKSQLMLESINELQRK-----EKSLQEENKVLQKELVEKQKVQKQ----QVQWDQ--------------TQPQTSSSSSSFMMREALPTTNISNYPAAAG-ERIEDVAAGQPQHVRIGLPPWMLSHING-- 'Oryza sativa OsMADS16_Q944S9.2' -MGRGKIEIKRIENATNRQVTYSKRRTGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSPSTD-----IKGIFDRYQQAIGTSLWIEQYEN---------------------------MQRTLSHLKDINRNLRTEIRQRMGEDLDGLE-FDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKK-----VKHSYEAYETLQQELGLR-EEPAFGFVDN-TGGGWDG-----------------------GAGAGAAADMFAFRVVPSQPNLHGMAYGGNHDLR---LG----------- 'Oryza sativa OsMADS18_Q0D4T4.1' -MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAH-EISVLCDADVALIVFSTKGKLYEFSS-HSS-----MEGILERYQRYSFDER--AVLEPNTED--------------------QENWGDEYGILKSKLDALQKSQRQLLGEQLDTLT-IKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKK-----EKSLKNQNNVLQK-LMETEKEKNNAIINTNREEQ-------------NGATPSTSSPTPVTAPDPIPTTNNSQSQPRG--SGESEAQPSPAQAGNSKLPPWMLRTSHT-- 'Oryza sativa OsMADS22_Q9XJ66.1' MARE-RREIKRIESAAARQVTFSKRRRGLFKKAE-ELSVLCDADVALIVFSSTGKLSHFAS-S-S-----MNEIIDKYNTHSNNLGKAE-QPSLDLN----------------------LEHSKYAHLNEQLAEASLRLRQMRGEELEGLS-IDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRK-----SSQLAEENMQLRNQVSQIS----PAEKQVV----------------------DTEN-FVTE-GQSSESVMTALHSGSSQSQDNDDGSDVSLKLGLPCGAWK--------- 'Oryza sativa OsMADS26_A2YQK9.2' -MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAR-ELSILCEADIGIIIFSAHGKLYDL--ATTG----TMEELIERYKSASGE--QANAC----GDQR-------------------MDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSK-----EGMLKAANEILQEKIVEQN-GLIDVGMMVADQQNGHFS-------------------TVPLLEEITNPLTILSGYSTCRGSEMGYSF----------------------- 'Oryza sativa OsMADS2_Q40702.1' -MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAR-EISVLCDAEVGVVIFSSAGKLYDYCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGIVNVNDKLMDHWERH----VRT-----DKMLEDENKLLAFKLHQQDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQENN------------------------ 'Oryza sativa OsMADS32_Q8S151.1' -MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYHFLSPTVP----SVREFVERYEATTHTKVWADIR-----QER----------------------RAELEKVGSMCDLLEKQLRFMTVDDGEEYT-VPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQNI---------IRGRQEERYGLCDKIAHAQTLKDVECGSTS------------------------------LSNGLDLKLGFN---------------------------------- 'Oryza sativa OsMADS4_Q40703.3' -MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAR-EIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRVKKENDNMQIELRHMKGEDLNSLQ-PKELIAIEEALNNGQANLRDKMMDHWRMH----KRN-----EKMLEDEHKMLAFRVHQQEVELSGGIRELELGYHHDD-------------------------RDFAASMPFTFRVQPSHPNLQQEK------------------------ 'Oryza sativa OsMADS55_AAQ23144.2' MARE-RREIRRIESAAARQVTFSKRRRGLFKKAE-ELAVLCDADVALVVFSSTGKLSQFAS-S-N-----MNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLS-VEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRK-----GIQLAEENMRLRDQMPQVP----TAG-LAVP---------------------DTEN-VLTEDGQSSESVMTALNSGSSQ--DNDDGSDISLKLGLP-------------- 'Oryza sativa OsMADS58_BAE54300.1' IGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAY-ELSVLCDAEVALVVFSSRGRLYEY--SNN-----SVKETIERYKKANSDTSNASTVAEINAQHY----------------------QQEAAKLKQQITNLQNSN-RTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRR-----ETELQNDNMYLKSKVAESERGLQTVNMMGSASTS-EYV-------------------QNMIHYDPRNFLQFNIMHQPQYYPEQEDRKAFMSDER---------------- 'Oryza sativa OsMADS5_A2Y9P0.1' -MGRGKVELKRIENKISRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSTRGRLFEFST-SSC-----MYKTLERYRSCNYNLNSCEASAALETE--------------------LSN-YQEYLKLKTRVEFLQTTQRNLLGEDLVPLS-LKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRK-----EQQLQDANKDLKRKIQETSGENMLHIS---CQDVG--------PSG---HASEANQ-EFLHHAICDPSLHIG-YQA-YMDHLNQ-------------------------- 'Oryza sativa OsMADS65_Q9XJ61.1' MARRGRVQLRRIEDKASRQVRFSKRRAGLFKKAF-ELALLCDVEVALLVFSPVGKLYEYSS-S-S-----IEGTYDRYQQFAGARRDLN-------------------------------EGSTSINSDENAS-IHSRLRDITAWSLQNN--------------------ADESDANQLEKLEKLLTN-----ALRDTKSKKMLAKQNGEGS-----------------------------------------RSRANSSGSRGQEEGSA--------------------------------- 'Triticum aestivum AP1_AAO72630.1' -MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVGLIIFSTKGKLYEFST-ESC-----MDKILERYERYSYAEK--VLVSSESEI--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLN-LKELQQLEQQLESSLKHIRSRKNQLMHESISELQKK-----ERSLQEENKVLQKELVEKQKAH------AAQQDQ--------------TQPQTSSSSSSFMLRDAPPAANTSIHPAAAG-ERAEDAAVQPQAPPRTGLPPWMVSHING-- 'Triticum aestivum APETALA3_like' -MGRGKIEIKRIENATNRQVTYSKRRSGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSTGTD-----IKGIFDRYQQAIGTSLWIEQYEN---------------------------MQRTLSHLKDINRNLRTEIR--MGEDLDALE-FEELRDLEQNVDAALKEVRQRKYHVITTQTETYKKK-----VKHSQEAYKNLQQELGMR-EDPAYGFVDNPAAGGWDGV-------------------AAVAMGGGSAADMYAFRVVPSQPNLHGMAYGGSHDLR---LG----------- 'Triticum aestivum PISTILLATA_lik' -MGRGKIEIKRIENSSNRQVTFAKRRAGLVKKAR-EIGVLCDAEVGVVIFSSAGKLYDFWTPETT-----LPRILEKYQTNSGKILWDEKHKS---------------------------ISAEIDRVKKENDNMQIELRHMKGEDVNSLQ-PKELIAIEEALTNGQTNLRDKMMDHWKMH----RRN-----EKMLEEEHKLLALRMHQQD-DLSSGMREMELGYHQG--------------------------RDFTSQMPFTFRLQPSHPNLQEDK------------------------ 'Triticum aestivum PISTILLATA_lik2' -MGRGKIEIKRIENQSNRQVTFSKRKNGILKKAK-EISVLCDAEVGVVVFSSAGKLYDFCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGLTSLHEKQMEHYDRL----VKH-----GKMLEDENKLLAFKVHQHDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQEDS------------------------ 'Triticum aestivum TaAGL10_ABF579' -MGRGPVQLRRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVALIVFSTKGKLYEYSSQDSS-----MDVILERYQRYSFEER--AVLDPSIGN--------------------QANWGDEYGSLKIKLDAFQKSQRQLLGEQLGPLT-TKELQQLEQQLDSSLKHIRSRKNQLLFESISELQKK-----EKSLKDQNGVLQKHLVETEKEKNNVLSNIHHQEQLNGATNINHQEQLNGATTSSPSPTPATAQDSMATPNIGPYQSSESGGGNPEPQPSPAQANNSNLPPWMLSTISSR- 'Triticum aestivum TaAGL11_ABF579' MARE-RREIKRIESAAARQVTFSKRRRGLFKKAE-ELSVLCDADVALIVFSSTGKLSQFAS-S-S-----TNEIIDKYSTHSKNLGKTD-QPALDLN----------------------LEHSKYANLNDQLAEASLRLRQMRGEELEGLS-VDELQQLEKNLETGLHRVLQTKDQQFLEQINELHRK-----SSQLAEENMKLRNQVGQIP----TAGKLVVA---------------------DTEN-VVAEDGQSSESVMTALHSGSSQ--DNDDGSDVSLKLGLPCLPWK--------- 'Triticum aestivum TaAGL14_ABF579' -MGRGRSEIKRIDNPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYQYLAPTVP----SVKEFVERYEAATHTKVWSDIR-----QER----------------------RAELEKVAKMCDLLEKELRFMTVDDGEQYT-VPSLAALEHNLEAAMHKVRSEKDRKIGGEMSYLENM---------IRGKQAERYGLCDKLAHAQSLKVVEGGSTS------------------------------LNNGLDLKLGFN---------------------------------- 'Triticum aestivum TaAGL25_ABF579' -MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVGLIIFSTRGKLYEFST-ESC-----MDKILERYERYSYAEK--VLVSSESEI--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLN-LKELQQLEQQLESSLKHIRSRKNQLMHESISELQKK-----ERSLQEENKVLQKELVEKQKAH------VAQQDQ--------------TQPQTSSSSSSFMLRDAPPAANTSIHPAATG-ERAEDAAVQPQAPPRTGLPPWMVSHING-- 'Triticum aestivum TaAGL32_ABF579' -MARGKVQLRRIENPVHRQVIFCKRRAGLLKKAR-ELSVLCDADIGIIIFSAHGKLYDL--ATTG----TMDGLIERYKSASGEGVAADGC----GDQR-------------------VDPRQEAMVLKQEIDLLQKGLRYIYGNRANEHMNVDELNALERYLEIWMFNIRSAKMQIMIQEIQALKSKILYMQEGMLKAANEILQEKIVEQH-GLIDVGMTIADQQNGHFS-------------------TVPLLEEITNPLTILSGYSTCRGSEMGYSF----------------------- 'Triticum aestivum TaAGL42_ABF579' MARRGRVELRRIEDRTSRQVRSSKRRAGLFKKAF-ELSLLCDAEVALLVFSPAGKLYEYAS-S-S-----IEGTYDRYQQFAVPGRNLI-------------------------------QEDATVCNDEDPSNMQSRLGGIAAWSLDNN--------------------ADNSDASSLEKLEKLLKD-----ALRITESKKALAKQNSGGS-----------------------------------------TSGESPNGPTGQENGRNA?------------------------------- 'Triticum aestivum TaAGL8_ABF5794' -MGRGKVELKRIDNKISRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSTRGRLFEFST-SSC-----MYKTLERYRSCNFNS---EATATPETE--------------------QSN-YQEYLKLKTRVEFLQTTQRNLLGEDLGPLN-MKELEQLENQIEISLKHIRATKSQQSLDQLFELKRK-----EQQLQDVNKDLRKKIQETSVENVLQMS---CQDVG--------PSGSSGHANQANQQEYFH-HDCDPSLHIG-YQRNFLDQLNKE------------------------- ; END; [ The following blocks are output data for analysis step 22570 ] BEGIN TREES; TITLE 'MADS-box family'; LINK TAXA = TaxaForAnalysisStep22570; TREE Imported_tree_0 = [&R] (('Arabidopsis thaliana AP3_NP_1910':0.572489,('Oryza sativa OsMADS16_Q944S9.2':0.076275,('Hordeum vulgare APETALA3_like_AA':0.0,(Leymus_chinensis_LcMADS4:0.004479,'Triticum aestivum APETALA3_like':0.0):0.004475):0.019944):0.295712):0.250365,((('Arabidopsis thaliana AG12_like_N':0.33811,(Leymus_chinensis_LcMADS11:0.131764,('Triticum aestivum TaAGL32_ABF579':0.018515,(Aegilops_tauschii_subsp._tauschii:0.009274,'Oryza sativa OsMADS26_A2YQK9.2':0.071168):0.0):2.0246E-7):0.329308):0.587109,(('Oryza sativa OsMADS58_BAE54300.1':0.125545,('Hordeum vulgare WM29B_ACB45306.1':0.015947,Leymus_chinensis_LcMADS6:0.037904):0.204428):0.500048,('Oryza sativa OsMADS32_Q8S151.1':0.093321,('Hordeum vulgare WM16_ACB45307.1':0.010642,(Leymus_chinensis_LcMADS10:0.0,'Triticum aestivum TaAGL14_ABF579':0.005311):0.0):0.043696):0.914702):0.078033):0.315189,((('Arabidopsis thaliana SEP1_NP_568':0.367584,('Oryza sativa OsMADS5_A2Y9P0.1':0.113784,(Leymus_chinensis_LcMADS7:0.052759,'Triticum aestivum TaAGL8_ABF5794':0.028535):0.046603):0.316701):0.224533,((Leymus_chinensis_LcMADS2:0.030222,('Oryza sativa OsMADS18_Q0D4T4.1':0.244286,'Triticum aestivum TaAGL10_ABF579':0.026119):2.02463E-7):0.350478,('Oryza sativa OsMADS14_P0C5B1.1':0.102351,(Leymus_chinensis_LcMADS1:0.019509,('Triticum aestivum AP1_AAO72630.1':0.0,'Triticum aestivum TaAGL25_ABF579':0.012101):0.021397):0.073092):0.222709):0.22277):0.396805,(('Arabidopsis thaliana PI_NP_19752':0.410646,((Leymus_chinensis_LcMADS3:0.0,('Hordeum vulgare PISTILLATA_like':0.004764,'Triticum aestivum PISTILLATA_lik2':0.00479):0.004761):0.086819,('Oryza sativa OsMADS2_Q40702.1':0.042487,('Oryza sativa OsMADS4_Q40703.3':0.048767,('Triticum aestivum PISTILLATA_lik':0.004771,('Aegilops tauschii subsp. tauschii_B':0.0,Leymus_chinensis_LcMADS5:0.014274):0.0):0.10816):0.117998):0.01104):0.24922):0.387913,((('Brachypodium distachyon AGL14_li':0.106738,'Oryza sativa OsMADS65_Q9XJ61.1':0.25792):0.052785,(Leymus_chinensis_LcMADS8:0.034149,'Triticum aestivum TaAGL42_ABF579':0.045194):0.056545):0.826407,('Arabidopsis thaliana AGL22_SVP_N':0.232228,('Oryza sativa OsMADS55_AAQ23144.2':0.107636,('Oryza sativa OsMADS22_Q9XJ66.1':0.06411,(Leymus_chinensis_LcMADS9:0.030177,'Triticum aestivum TaAGL11_ABF579':0.022246):0.042989):0.030453):0.304333):0.316041):0.420861):0.028542):2.60055E-5):0.250365):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110540] END;