#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on December 27, 2025; 3:24 GMT TreeBASE (cc) 1994-2008 Study reference: Misra V.A., Wang Y., & Timko M.P. 2017. A Compendium of Transcription Factor and Transcriptionally Active Protein Coding Gene Families in Cowpea (Vigna unguiculata L.). BMC Genomics, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21817] [ The following blocks are input data for analysis step 22575 ] BEGIN TAXA; TITLE TaxaForAnalysisStep22575; DIMENSIONS NTAX=44; TAXLABELS Arabidopsis_thaliana_AT2G36400.1 Arabidopsis_thaliana_AT4G04780.1 Arabidopsis_thaliana_AT4G24150.1 Arabidopsis_thaliana_AT5G53660.1 Phaseolus_vulgaris_Phvul.001G031000.1.p Phaseolus_vulgaris_Phvul.001G143000.1.p Phaseolus_vulgaris_Phvul.001G187500.1.p Phaseolus_vulgaris_Phvul.002G041800.1.p Phaseolus_vulgaris_Phvul.002G131700.1.p Phaseolus_vulgaris_Phvul.002G220900.1.p Phaseolus_vulgaris_Phvul.003G131800.1.p Phaseolus_vulgaris_Phvul.006G193200.3.p Phaseolus_vulgaris_Phvul.007G196300.1.p Phaseolus_vulgaris_Phvul.007G222300.1.p Phaseolus_vulgaris_Phvul.007G260600.1.p Phaseolus_vulgaris_Phvul.009G228000.1.p Phaseolus_vulgaris_Phvul.010G048400.1.p Phaseolus_vulgaris_Phvul.010G130000.1.p Phaseolus_vulgaris_Phvul.011G017700.1.p 'Vigna unguiculata C35016599-0.0' 'Vigna unguiculata C35029295-0.0' 'Vigna unguiculata scaffold18283-0.0' 'Vigna unguiculata scaffold18956-0.0' 'Vigna unguiculata scaffold19206-0.1' 'Vigna unguiculata scaffold2088-0.2' 'Vigna unguiculata scaffold25311-0.0' 'Vigna unguiculata scaffold26229-0.0' 'Vigna unguiculata scaffold3442-0.1' 'Vigna unguiculata scaffold35251-0.1' 'Vigna unguiculata scaffold3688-0.0' 'Vigna unguiculata scaffold40456-0.2' 'Vigna unguiculata scaffold41-0.0' 'Vigna unguiculata scaffold41204-0.0' 'Vigna unguiculata scaffold43312-augustus0.1' 'Vigna unguiculata scaffold4354-0.2' 'Vigna unguiculata scaffold51466-0.0' 'Vigna unguiculata scaffold53506-0.0' 'Vigna unguiculata scaffold62340-0.1' 'Vigna unguiculata scaffold65931-0.0' 'Vigna unguiculata scaffold68524-0.0' 'Vigna unguiculata scaffold79886-0.0' 'Vigna unguiculata scaffold80471-0.0' 'Vigna unguiculata scaffold81325-augustus0.4' 'Vigna unguiculata scaffold96762-augustus0.1' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M43437] TITLE Cowpea_bean_GRF_MAFFT; LINK TAXA = TaxaForAnalysisStep22575; DIMENSIONS NCHAR=530; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Arabidopsis_thaliana_AT2G36400.1 MDL-QLKQWRSQQQTESEEQPSAKIPHVFDQIHSHTATSTALPLFTPEPKMGSFFSWAQWQELELQALIYRYMLAGAAVPQELLLPHPLQHQPAWYL-GRAAMDPEPGRCRRTDGKK-WRCSRDVFAGH-------KYCERHMHRGRNRSRKPVETPTTVNATAT---------------------SMASSVAAAATTTTAT--TTSTFAFGGGGGS-------------------------------------------------------------EEVVGQGGSFFFSGSSNSSSE--------------------------------LLHLSQSCSEMKQESNN----------------------------------NNKRPYE-SHIGDGG-------------------HILRPFFDDWPRSSLQ--------EADNSSSPMSSATCLSISMPGNSSSDVSLKGARS------W-------PLAEALRSSSSSSPTSVLHQLGQ------------------- Arabidopsis_thaliana_AT4G04780.1 MDI----------------------------ISQLQEQVNTIAAITLQRDAPTPFPEQPKQGLVKAAKQFDALVAALPL------------------------------SEGGEGAQLKRIAELQVENQ------------KQLEAAEKELKQVQAADNCLNMKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT4G24150.1 LDVEERKEDFPHHPSYSSPSSSSCYAGVMFSVSNQAYTSSHSGMFTPAGDAGAAFSEAQWHELERQRNIYKYMMASVPVPPELLTPHQSNYLPLSMSASNNTADLEPWRCKRTDGKK-WRCSRNVIPDQ-------KYCERHTHKSRPRSRKHVESSHQSSHHNDIRTAKNDTSQLVYGQPISQIPVLSTLPSASSPYDHTD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAIGTLNPETQEAVQLKVGSS-----RELKRGFDDLNFRQKEPIVDQSFGALQGLSLNQTQETQFVVEGKQDEAMGSSLTGTNQHHEGPSW--LSTTPPLAEALCLGVSTTTSSCSRSSS-------------------- Arabidopsis_thaliana_AT5G53660.1 MDFDKTTDSFSNQQQYKESSFGFR-------------------DIHPHPYYYYPFTNAQLKELERQAMIYKYMIASIPVPFDLLVSSPSA--------SPCAGDLEPGRCRRTDGKK-WRCAKEVVSNH-------KYCEKHLHRGRPRSRKHVEPPYSRPNNNGGSVKNRDLKKLPQKLSSSSIK--------------------------------------------------------------------------------------------------------------------------------------------DKTLEPMEVSSSISNY------------------------------------------------DSRGSATTEQE---------------NKYLNFIDVWSDGVR------------------SSEKQSTTSTPVSSSNGSLYSLSMDHEEMSSWLAMSTTPPLAEILRPSTSSSPSRVMKKMTSSSDESSQ------------ Phaseolus_vulgaris_Phvul.001G031000.1.p AL----------------------------------------------SGMRGPFTPSQWMELEHQALIYKYITANVPVPTHLL-------IPIGF---SNNTDPEPGRCRRTDGKK-WRCSRDAVVDQ-------KYCERHMNRGRHRSRKPVEGQSGHALQQH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HPLRHFIDDSPK---------------------SDRTQLSISIPISSSDFMSFA------------------------------------------------------------ Phaseolus_vulgaris_Phvul.001G143000.1.p MRIRKRPVLFPSHSPSSSSSSAVLHRHASQSLPSIGKPSNTLAGVVS------PLSPSSTQAATHSKKMKAKMKTKNKKCSSRNGEVNVR--------VRGSALMEGSRCSRVNGRG-WRCCQQTLVGY-------SLCEHHLGKGRLRSMTSVRSRSIASTLEKQNTSVA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPFEEEEEKKPE------------IITKKRMKLGVVKARSISSLLGQTNTQITAVAHE-------------------------------------------------------- Phaseolus_vulgaris_Phvul.001G187500.1.p MDL-HLKQWRNQH--ESEEQHSTKMPKLL-------------------PRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELL-------QPIWG---RGAMDPEPGRCRRTDGKK-WRCSRDVVAGQ-------KYCERHMHRGRNRSRKPVELPTPSSAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMLRHFFDDWPR------------------------------------------------------------------------------------------------------ Phaseolus_vulgaris_Phvul.002G041800.1.p GG----------------------------------------------EMSKWPFTVSQWQELEHQALIYKYMVAGLPVPPDLV-------IPIFY---GKKVDPEPGRCRRTDGKK-WRCSKEAYPDS-------KYCERHMHRGRNRSRKPVESQTMTQSVTS-------------------LTVNAGSSSSNATGDFQN--LTTTNTYGNPQGTGSGTDQTHYDLESIPYGIPS-------------------------------------KEYFQGSKGDGGEHSLSSKTFGSN-------------------------NKVDASLMPMGVAQGD-------------------------------------------QQPSFLC-SEYGSGETMQEG--------------QSLQPFFDEWPK---------------------FSTTQLSISIPMSSSNFSTTS------------------------------------------------------------ Phaseolus_vulgaris_Phvul.002G131700.1.p ST----------------------------------------------AAMWTPFTAAQWHELEHQALIFKYLKAGLSVPPDLL-------LPIYY---GKKIDPEPGRCRRTDGKK-WRCSRDAHPDS-------KYCDRHMIRRRYRSRKPVESQPHSSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phaseolus_vulgaris_Phvul.002G220900.1.p ----------------------------------------------------------------------------------------------------EDPLPDHLRCGRTDGRQ-WRCRRRVKDNL-------KLCEIHYLQGRHRQYKEKVPESLKLQRKRKTSEVKKKRRVVAASPAKKKALKQDRMVLKREAEKKNNKKKNKKKKKKEEENVASHFDVKVGVDSKTV-----TSKNVDKKCNLIQCLSCEEFFCMDCICPVCRGTCSCKDCSASQCQETEAKVKFGCNEKNYNHCKTPILHRSCPSCSYSLCSSCCQESIDTSVMPEEMEVKAEEICSYDFPETSSSSCSLCFKFCPTLDIDNFEHFQKHWGVQDVLQSTSNNIRQYFTGSVKKQIFKEALPVPEYMHPWSGLLNLAANLPHGSAKHDDQLTKIKLLKTIMQHVEETEQSMDSNISECDFFTESISKQDIPGAQWDVFQDVPKLIEYLKRHSYTRKMNIFLDNTHKRRLKEEFKIEPQAVIIP- Phaseolus_vulgaris_Phvul.003G131800.1.p MN----------------------------------------------GRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTHQSQHLPMGL---GRKIDPEPGRCRRTDGKK-WRCSKEAYPDS-------KYCERHMHRGKNRSRKPVEVLKTTPTSSH------------------------------------------SFLYHHPSRP-SSGVALSFQDNSAPLFLDTASCSQNN------------------------------NTYVYGLKEEVDEHAFFTEPSGTMRSFSAS-------------------SMEDSW-----------------------------------------------------QQPQQDQ-GCYIAGSGKEEP--------------KTVHRFFDEWPP---------------------SSTTQLSISIPTSSHDFATFS------------------------------------------------------------ Phaseolus_vulgaris_Phvul.006G193200.3.p -------------------------------------------------------------------------------------------------AEEGKVVPEHLRCNRTDGRQ-WRCRRRVMENL-------KLCEIHYLQGRHRQNKETVPESLKLQRKRQNAKRKRKSR---------EALVNRRMVLQREVEKKKNLHSNHELRKELPNGVMAIANLKKG-----------------KKCTLIRCSNCQEFFCMDCICPVCRGTCTCKDCLARQHKETKAKIKFGCNEKNYNHCKTPILHKSCLSCSYSLCLSCSHEITDTSMLTEKMEANAEEICSYDFPETLSSSCPMCIEFYPTFDIDHFEHFQKHWGVRDVLQSTPNNVRQYFTGSLKKQLFKEALPIQEYMNPLSGLLNLAANLPQGSTKHDDQLSRIKLLKRVAEHAEDREQNLDTNISECGSYSETMSPDHNPGAQWDVFQDVPKLLEYLKRHSHASKMSFFLDNTHKMRLKEEFMLCSIGICIP- Phaseolus_vulgaris_Phvul.007G196300.1.p -------------------------------------------------------------------------------------------------EDNAAGIPDDLRCKRSDGKQ-WRCTAMSMPDK-------TVCEKHYIQAKKRAANSAMRANLKKAQSLNESDVSDD--FLSAISLSQKKLKNFRYTPERDARRASSARHAHDEVDADADADV-DVDADVDVDADVVDVDADADADADQTCRVTWCLRCDRGYCDSCICPACRGICNCKTCLV---HELEKKLRFNTDEQMCNFCRIPITHRRCPNCSYDLCLNCCRKTYDQNIFPQELVKNVEEMISNDYGTTPGSDLRLCEAYCPAEDIDGIGNFRKHWKVKQVFDGSSEELAEFMKGYLEKSASEEKLPLLQYIHSKWGLLNVAAKLPHYSLQNDEQRTKIEIMQEAKESHGDPQSSLDSSLGEFEIYSGAVSEETHPGV-WDVFQDVPILTKYLKIHSGDAGNAIFLDKHHKRKLKEEFGVEPEAIFVP- Phaseolus_vulgaris_Phvul.007G222300.1.p MDL-QLKQWRNHH--ESEQQHSPNMPKFL-------------------PRKESCFSFAQRQELELQSLIFRYMQADAPVPPQLL-------QPIWR---REAEDPEPGRCRRTDGKK-WRCSREAMDDQ-------KYCQRHMHRGRNRSRKPVEQSNAPSSSGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HVLRHFFDDLPR------------------------------------------------------------------------------------------------------ Phaseolus_vulgaris_Phvul.007G260600.1.p MRIRKRQVPF-------------------------------------------PLLPSATEEEKNSKMKMKRMKTKNRKCSRRGGEYEER--------VRGGALMEGSRCSRVNGRG-WRCCQQTLVGY-------SLCEHHLGKGRLRSMTSVRNKSVGTT---QNSFTE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPLKDAEEKKPV------------IVTKRRMKLGMVKARSISSLLGQTNTEIVVIAED-------------------------------------------------------- Phaseolus_vulgaris_Phvul.009G228000.1.p MN----------------------------------------------GRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTNQPQHLQMGL---GRKIDPEPGRCRRTDGKK-WRCSKEAYPDS-------KYCERHMHRGKNRSRKPVEVLKTTPTTQQ---------------PISSITKLNNTLSPLASSETHQHHHYASFLYQHPPSR-SSGIGLSFEDNSAPLFLDTGSCSQSN------------------------------TDYAYGEKEEVDEHAFFTEPCGIMKSFSAS-------------------SMDDSWLTPLTMSSSSSSNKQRSSFGSHSK-----------------------------QQEQQDQGGCYMGGGGKEEP--------------KTVHRFFDEWPH---------------------SSTTQLSISIPTSSHDFPAFS------------------------------------------------------------ Phaseolus_vulgaris_Phvul.010G048400.1.p IDIDERKRVKKEKESNSVEGVDAS---------------------HAPSEINHVITEAQRRELHHQVFIFNHLAYKLPPPQHLVFNSEYSFLGFDH---GSMVDPEPHRCRRTDGKK-WRCSKSVVPCQ-------KYCERHMHRGRNRSRKPVETTQLNSTATKPSTKSSKSSAMQPTDTPSSTPSKSLTIDNCSSIRSKI--RAADYVFSSAAAVSPGTLATSVAPKVAATFSSVASVASDN------------------------------KSCLKMCQKDNQSKSCVSNNTGNDGKGSI-----------------VGDSNSVSTFSPTSVLQS--------------------------------------------YDKTNIEPAAPRTDGKKWQCKSAVLPG-------QGKKRFANHATYSP----------AITHQAHSAIPSTNLSMSVPASA-------------------------PQCNEKGPSSSDTDTTISLQE--------------------- Phaseolus_vulgaris_Phvul.010G130000.1.p AS----------------------------------------------ARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLI-------YSIGF---GRKVDPEPGRCRRTDGKK-WRCSKEAYPDS-------KYCERHMHRGRNRSRKPVEVSSATSTHV------------------------------------------------------------------------------------------------------------------HGIREDVDERAFFPEASGSA---------------------------------------------------------------------------------------RSYT-DSYQQLSMSTSQ--------------RPLHRFFGEWPP------------------------------------------------------------------------------------------------------ Phaseolus_vulgaris_Phvul.011G017700.1.p NG----------------------------------------------YYGRSPFTVSQWEELEHQALIFKYMLAGLPVPHNLV-------LPIFY---GKKVDPEPGRCRRTDGKK-WRCSKEAYPES-------KYCERHMHRGRNRSRKPVESQTVTQSYL------------------------------------------------------------------------------------------------------------------QGLKSEGGDHIFFSEASGSN---------------------------------------------------------------------------------------KVLQ-MESHLEQTWEDH--------------QSLRPFFNEWPK---------------------FSTTQLSISIPMSSDISATSS------------------------------------------------------------ 'Vigna unguiculata C35016599-0.0' ------------DHPLNGKTSSSGPEPQMQYIRQLNQGASQAGGPSNEGGSGNGFTKQQLHVLKAQILAFRRLKKGGTLPQELLRATQAQ-QLSHADKSTGNIVAEQASHIESNGQS-------------------------FARDEKSTLPPVHVQSTVSQPKDAASTRKYH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPLFDFF----------------------------FTRKSFGSSMMLNN----------------------------------------------------------------- 'Vigna unguiculata C35029295-0.0' -------------------------PAILQDISPYTSPTTTSSTFKP-SAGGMPFTSAQWRELERQAMIYKYMMASVPVPPD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold18283-0.0' --------------RHHLSSSSCCNSWGQQ-----SYGGSHIRGSKGMGLIP-------------------------------------------ICKCGEVAVLRVARTLKNNGRQFWGCSKFKACSDNVWCNYFKWCDEEFCDERDGI-----------------------------------------------IAQQRMKI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SELEISVRAMKKTNQFLLRLVIVVVVIFVVMLPIMFK------------------- 'Vigna unguiculata scaffold18956-0.0' --------------RNQNPSASFCG------------------GSGSIDLGV-------------------------------------------SCYCGEKAALRTARTLKNKGKKFWGYPNGS------GCNYFKWCMKSVAEEMEKCMKSIENTAAVRSVVAEEMKAAEEKCMKSIENTAAVRSVVAEEAVRSVVAEEMEKIENTVAEEMEKENTA------------------------AEKCSVVKCMSIETAAVRSVVTAAVRSVVAMEKCSVVAEEEMEAAVRNTAAEKCMKSIERSVEEKCSINVAEEMCMKMIAAV--RSVVAEEVAEEMEKCMKSIENTIEAAVRSVCMKNTAAVRSVVEEMEKENAAVRSVVAEEMNKMKSIETAAMKSVVAEEMEKCMKSIENTAAVRAEMEKCMKTAA---------VVAEEMSVVEEMEKSEMEKCMKSAEEMEKSSVVAEEMTAARSAVRSVVKCMKSIENTAAVRSISVVAEEMEKCSIENTAAVRSVEKENT- 'Vigna unguiculata scaffold19206-0.1' --------------PSHSCSSSSCT----------------NSTVSSHGGVG-------------------------------------------RCYCGEKAIMRTARTAKNRGRKFWGCPKFKGSEEVVGCNFFSWCSENVMEERCGP-----------------------------------------------STKN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold2088-0.2' --------------PSHSCSSCTCNAWEM-----------KNSSFSSH------------------------------------------------CYCGEKAITRTARTAKNRGRKFWGCPKFKGSEEVVGCNFFSWCSENVVEERCGP-----------------------------------------------TKND----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold25311-0.0' ------------------------------------------------------------------------------------------------CGCGEKLLLLKASTVKNKGRLFWRCRNWA------NCNYFEWVNESTFEGKDSE-----LESSGGKIVEEDCLEKEEKD----------------------IKKN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKLKIGKFLQSV------------------------------------------------------------------ 'Vigna unguiculata scaffold26229-0.0' M------------SRVQSSSSCTHNSRVMR-----N----QSGGCRGLGEAP-------------------------------------------TCNCGVAAVLRTARTIKNGGRQFWGCPNFKGSEASYGCNFFKWCIEDGDDEKDVT-----------------------------------------------ILRQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold3442-0.1' --------------MSRGASSSSCNSWVHR-----SCNSCH---GRVSGSPP-------------------------------------------ICDCGDIAVVRTARTTKNLGKQFWGCANFK------GCNFFKWSD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Vigna unguiculata scaffold35251-0.1' --------------RGHSFSSCSCNSWGTQ-----NPRLSNHGGVLSHGGAP-------------------------------------------ICNCGEVAVLRTARTTKNGGKQFWGCPNYKGSEAFIGCNYFKWCSEDAADERDNT-----------------------------------------------IIRQRRKI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FILEKELKGSRMFVNVLLGIMGLLVVVNIIVLSRLMK------------------- 'Vigna unguiculata scaffold3688-0.0' --------------MSRGASSSSCNSWIHR-----TCNSCH---GRVLGSPP-------------------------------------------ICDCGDITVVRTARTTKNLGKQFWGCANFKCGEDVLGCNFFKWCYEEDADERDAI-----------------------------------------------IVRQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AYMENSLSVWKKRMQLPLAVI----------------------------------- 'Vigna unguiculata scaffold40456-0.2' -----------------------------------------------------PFTVSQWEELEHQALIFKYMLAGLPVPQN---------HAFFH---HPTVDPEPGRCRRTDGKK-WRCSKEAYPDS-------KYCERHMHRGRNRSRKPVESQTMTQSSS------------------------------------------------------------------------------------------------------------------------TVTHIFFSEAS----------------------------------------------------------------------------------------------------------------------------RPFFNEWP------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold41-0.0' M------------SHSHPWSSCLCGS--------------HNHIVSSPATVS-------------------------------------------GCHCGEIAVLRVARTVKNGGKEFWGCPHYK-------CH----CGEIAVLR---------------------------------------------------VART--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TKNCWKQFWGCAQ?------------------------------------- 'Vigna unguiculata scaffold41204-0.0' --------------RGHSSSSCSYNSWGMQ-----NPRLSNHGGVLSHGGAP-------------------------------------------ICNCGEVAVLRTARTTKNGGKQFWGCPNYKGNEAFIGCNYFKWCSEDAVDERDNT-----------------------------------------------IIRQIRKI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FILEKELKGSRMFVNVLLGIVGLLVVVNIIVLSRLMK------------------- 'Vigna unguiculata scaffold43312-augustus0.1' MD---------------------------------------------------PTDGKKWRVVAGQKYCERHMHRGLPTPSSGGASASLK---------SPFMDPEPGRCRRTDGKK-WRCSRDVVAGQ-------KYCERHMHRGRNRSRKPVELPTPSSANCGGGGGGAGSLGLGASSSISSPPLASSLKSPF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERSSGTKNEEFENEGGDGR------HMLRHFFDDWPRSLQD--------SDNNNAARINSATCLSISMPGNASSDVSLKGPTD------W-------PLAEALRSSTSTSPTSVLHHLP-------------------- 'Vigna unguiculata scaffold4354-0.2' MDYDLRPYALPQDYQTVIQESDACDE-----LACLAKQMDTNSKVHPSGAVHTNFAESSMNDLESSVMDEAVLVDTHSIPADVTLEG----------GDTGLGDLQKAASEGGDQSQ-NNASEDTMLDDQSVPNTHGLCANNDPDGKSEQAVSVNDQDQLLNANHVDTSTAEENNISIISGVLTVSTKSSGDSTQMCVDRQNDSDKCQLVSVNDESKRV---------------------SDSSQDCDVD--------------TPVNKSVSQLQNSSLTLHHEVTSSAKIGSSERETAPCVTEAEKPQSSDISSQLCGSMCASSDDNETVQEPSSEKLDDIAPGNQDSISSASPDSCIDGSPSQTEKDKNSAKQNTQVSEMINGSSKKMQSPVTETVKKSSATEAVRKNQQISDVGAVHSASKATPERKTRRSNQQVQLLIQGMIRQHGQKSHPPLSSPLWSGDSLQSSIKVSQPPGLQFSLIRALQSLASAVGSHSSTSSVSKNDQNVEKRHAEEAAALSALGKATP- 'Vigna unguiculata scaffold51466-0.0' --------------RHHLSSSSWCNSWGQL-----SCGGSHIRGSKGMGLIP-------------------------------------------ICKCGEVVVLRVARTLKNNGRQFWGCSKFKASSDNVWCNYFKWCDEEFCDERDGI-----------------------------------------------IARE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold53506-0.0' M------------SRSHPSSSCSCGS--------------RNHSVSSPGSVS-------------------------------------------GCHCGEIAVLRVARTAKNCGKQFWGYPLYKVGEDFKACNYFKWCTEDNGDERDAT-----------------------------------------------IARQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold62340-0.1' -----------------------------------------------------PFTPSQWQELEQQALVFKYMVTGTPIPPD--------------------VDPEPGRCRRTDGKK-WRCSKEAYPDS-------KYCERHMHRGRNRSRKPVEVSSATSTTA------------------------------------------------------------------------------------------------------------------------TNTRAFFPEAS----------------------------------------------------------------------------------------------------------------------------HRFFGEWP------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold65931-0.0' --------------PHHSSSSSCCNSWGQP-----NCGGSHIRGSKGMGLIP-------------------------------------------ICKCGEVAVLRVARTLKNNGRQFWDCSKFK------WCNYFKWCD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Vigna unguiculata scaffold68524-0.0' --------------RHHSSSSSCCNSWGQL-----SCGGSHIRGSKDMGLIP-------------------------------------------ICKYGEVVVIQVARTSKNNGRQFWGCSKYKASSDNVWCNYFKWCDEEFCDERDGV----------------------------------------------DVAL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Vigna unguiculata scaffold79886-0.0' -----------------------------------------------------PFTPSQWMELEHQALIYKYITANVPVPTHAL-------DSAAFW-GGGFTDPEPGRCRRTDGKK-WRCSRDAVVDQ-------KYCERHMNRGRHRSRKPVEGQSGHALTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold80471-0.0' -----------------------------------------------------PFTPSQWQELEHQALIYKYMASGISIPPD--------------------IDPEPGRCRRTDGKK-WRCSKEAYPDS-------KYCERHMHRGKNRSRKPVEVLKTTPSSSNTNTHQHQHHQQQQQQPISSITKLNTTLSPLASSSSES--HYAPFLYQHPPSSRSSAIGLSFEDNSAPLFLDTGSCSQSNTDCRIDRCRRCS------------------KEAYPDSKYERHMHEVKTTPSSSNTNTHQHQHQ---------------QQKLNTTLSPLASSSSESHY----------------------------------------HPPSSRS-SAIGTGSCSQSNTDCRHAFFT-----EPCHRFFDEWP------------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold81325-augustus0.4' ------------DHPLNAKASSSCPEAKMQYIRQLNPSASQDGGLTNEGGSGNGFTKQQLHVLKAQILAFRRLKKGGALPQELLRSLLVQ-QPIHSERSAGNIVAEQPRQNEANGKN-------------------------FIRDESNAVTAVHLQSTVAQPKDTTSTRKYH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPLFDFF----------------------------FTRKSFGSSMMLNN----------------------------------------------------------------- 'Vigna unguiculata scaffold96762-augustus0.1' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DADADADVDDVDADADADADDVDADVDADADDDADADADWCLKCDRGYCDSCICPACRGICNCKTC-------------------------------RCPNCSYDLCLNCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 22575 ] BEGIN TREES; TITLE Cowpea_bean_GRF; LINK TAXA = TaxaForAnalysisStep22575; TREE Cowpea_bean_GRF = [&R] (Phaseolus_vulgaris_Phvul.007G222300.1.p:0.3503024822350951,(Arabidopsis_thaliana_AT2G36400.1:0.17869604320453814,('Vigna unguiculata scaffold43312-augustus0.1':0.6790664421050115,(('Vigna unguiculata C35029295-0.0':1.00000050002909E-6,(Arabidopsis_thaliana_AT5G53660.1:0.6928476576986875,(((((Arabidopsis_thaliana_AT4G04780.1:1.8538356415847481,'Vigna unguiculata scaffold4354-0.2':0.9155749964907292):0.717605386296726,(('Vigna unguiculata scaffold25311-0.0':0.8706992635521449,(((('Vigna unguiculata scaffold3688-0.0':0.06352782289185552,'Vigna unguiculata scaffold3442-0.1':1.00000050002909E-6):0.4003302436419044,('Vigna unguiculata scaffold65931-0.0':1.00000050002909E-6,('Vigna unguiculata scaffold68524-0.0':0.10568677358298743,('Vigna unguiculata scaffold51466-0.0':0.06188033643146608,'Vigna unguiculata scaffold18283-0.0':0.031382468543527706):0.021623222569613087):0.02315358809782028):0.32494989035224414):0.18584963208947325,((('Vigna unguiculata scaffold26229-0.0':0.3661103746675708,'Vigna unguiculata scaffold41204-0.0':1.00000050002909E-6):0.039284059365208124,'Vigna unguiculata scaffold35251-0.1':0.03824350021351676):0.07465384758022695,(('Vigna unguiculata scaffold2088-0.2':0.09704203644617382,'Vigna unguiculata scaffold19206-0.1':0.28885457341216797):0.5440801157852663,('Vigna unguiculata scaffold53506-0.0':0.0532886140275123,'Vigna unguiculata scaffold41-0.0':0.6106047911052715):0.1074575452862657):0.21257252016178035):0.2898177691064282):0.29808948051297096,'Vigna unguiculata scaffold18956-0.0':0.8820419141848137):0.23990190311548606):0.619968597002085,('Vigna unguiculata scaffold81325-augustus0.4':1.00000050002909E-6,'Vigna unguiculata C35016599-0.0':0.28902611288097957):1.1349192795079508):0.5671721538966793):0.4457163055783465,((Phaseolus_vulgaris_Phvul.006G193200.3.p:0.29547033413768004,Phaseolus_vulgaris_Phvul.002G220900.1.p:0.07996669983252849):0.3299220908462549,((Phaseolus_vulgaris_Phvul.007G260600.1.p:0.379058232409689,Phaseolus_vulgaris_Phvul.001G143000.1.p:0.07907770455006786):1.2382913635132293,('Vigna unguiculata 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scaffold40456-0.2':0.14330761563825647,Phaseolus_vulgaris_Phvul.011G017700.1.p:0.10103821349521591):0.10693017005536748):0.1508474070559889):0.22692366393359065):0.12539306914447812,(Phaseolus_vulgaris_Phvul.001G031000.1.p:0.03853339693246205,'Vigna unguiculata scaffold79886-0.0':0.11338217179723616):0.22449843928627244):0.1692563401985522):0.13301088677467385):0.15480842933960104):0.13517734323856453,Arabidopsis_thaliana_AT4G24150.1:0.9262340976501172):0.22186811674046014):0.2799105476048617):0.0603143738230436,Phaseolus_vulgaris_Phvul.001G187500.1.p:0.06910128081682743)OROOT; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr107966] END;