#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on December 27, 2025; 3:28 GMT TreeBASE (cc) 1994-2008 Study reference: Misra V.A., Wang Y., & Timko M.P. 2017. A Compendium of Transcription Factor and Transcriptionally Active Protein Coding Gene Families in Cowpea (Vigna unguiculata L.). BMC Genomics, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21817] [ The following blocks are input data for analysis step 22580 ] BEGIN TAXA; TITLE TaxaForAnalysisStep22580; DIMENSIONS NTAX=85; TAXLABELS Arabidopsis_thaliana_AtWRKY20_CT Arabidopsis_thaliana_AtWRKY20_NT Arabidopsis_thaliana_AtWRKY40 Arabidopsis_thaliana_AtWRKY50 Arabidopsis_thaliana_AtWRKY54 Arabidopsis_thaliana_AtWRKY65 Arabidopsis_thaliana_AtWRKY72 Arabidopsis_thaliana_AtWRKY74 Oryza_sativa_OsWRKY2 Oryza_sativa_OsWRKY23 Oryza_sativa_OsWRKY27 Oryza_sativa_OsWRKY46 Oryza_sativa_OsWRKY68 Oryza_sativa_OsWRKY71 Oryza_sativa_OsWRKY82_CT Oryza_sativa_OsWRKY82_NT 'Vigna unguiculata C35020760-augustus0.1 NT' 'Vigna unguiculata C35031083-processed0.0' 'Vigna unguiculata C35036421-augustus0.2' 'Vigna unguiculata C35037167-0.1' 'Vigna unguiculata C35064493-augustus0.2' 'Vigna unguiculata C35066409-augustus0.1' 'Vigna unguiculata C35072274-augustus0.1' 'Vigna unguiculata C35075056-augustus0.1 NT' 'Vigna unguiculata C35083824-0.2_ORF+1 NT' 'Vigna unguiculata C35083824-augustus0.3 CT' 'Vigna unguiculata C35083824-augustus0.3 NT' 'Vigna unguiculata C35084108-augustus0.1' 'Vigna unguiculata scaffold10361-augustus0.3' 'Vigna unguiculata scaffold1454-processed0.1' 'Vigna unguiculata scaffold16279-augustus0.5' 'Vigna unguiculata scaffold2024-augustus0.2' 'Vigna unguiculata scaffold21114-augustus0.2' 'Vigna unguiculata scaffold2161-augustus0.5' 'Vigna unguiculata scaffold26172-augustus0.1' 'Vigna unguiculata scaffold2619-augustus0.2' 'Vigna unguiculata scaffold29982-processed0.2' 'Vigna unguiculata scaffold32826-processed0.1' 'Vigna unguiculata scaffold33087-0.0' 'Vigna unguiculata scaffold37976-0.1' 'Vigna unguiculata scaffold38934-augustus0.2 CT' 'Vigna unguiculata scaffold42631-0.0_ORF+1' 'Vigna unguiculata scaffold42631-augustus0.2' 'Vigna unguiculata scaffold43215-augustus0.2' 'Vigna unguiculata scaffold4444-0.1_ORF+1' 'Vigna unguiculata scaffold4444-augustus0.2' 'Vigna unguiculata scaffold46551-augustus0.4' 'Vigna unguiculata scaffold4700-augustus0.3' 'Vigna unguiculata scaffold5329-augustus0.1' 'Vigna unguiculata scaffold53935-processed0.0 CT' 'Vigna unguiculata scaffold53935-processed0.0 NT' 'Vigna unguiculata scaffold58478-processed0.0' 'Vigna unguiculata scaffold58860-augustus0.1' 'Vigna unguiculata scaffold59202-augustus0.1' 'Vigna unguiculata scaffold60128-processed0.0' 'Vigna unguiculata scaffold60168-augustus0.1' 'Vigna unguiculata scaffold62008-0.1_ORF-3' 'Vigna unguiculata scaffold63072-0.0' 'Vigna unguiculata scaffold66921-0.1' 'Vigna unguiculata scaffold6727-0.0' 'Vigna unguiculata scaffold70584-0.1' 'Vigna unguiculata scaffold73463-0.1_ORF+1' 'Vigna unguiculata scaffold81313-0.1_ORF+1' 'Vigna unguiculata scaffold81313-augustus0.2' 'Vigna unguiculata scaffold85153-augustus0.2 CT' 'Vigna unguiculata scaffold85153-augustus0.2 NT' 'Vigna unguiculata scaffold86127-augustus0.1' 'Vigna unguiculata scaffold87788-augustus0.3' 'Vigna unguiculata scaffold88185-augustus0.3' 'Vigna unguiculata scaffold89014-processed0.1' 'Vigna unguiculata scaffold89209-0.0' 'Vigna unguiculata scaffold89993-0.0' 'Vigna unguiculata scaffold90447-0.1' 'Vigna unguiculata scaffold90973-augustus0.1' 'Vigna unguiculata scaffold93568-augustus0.1 CT' 'Vigna unguiculata scaffold93568-augustus0.1 NT' 'Vigna unguiculata scaffold9384-processed0.0 CT' 'Vigna unguiculata scaffold9384-processed0.0 NT' 'Vigna unguiculata scaffold93858-processed0.0' 'Vigna unguiculata scaffold94441-augustus0.1 CT' 'Vigna unguiculata scaffold94441-augustus0.1 NT' 'Vigna unguiculata scaffold94471-augustus0.2' 'Vigna unguiculata scaffold94837-processed0.0' 'Vigna unguiculata scaffold95108-augustus0.1 CT' 'Vigna unguiculata scaffold95149-processed0.0' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M43442] TITLE Cowpea_WRKY_MAFFT; LINK TAXA = TaxaForAnalysisStep22580; DIMENSIONS NCHAR=240; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240] [ . . . . . . . . . . . . . . . . . . . . . . . .] Arabidopsis_thaliana_AtWRKY20_CT -----------------------------------------------------------------------------------------------IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTA-HGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSSNHEIQPRFVSSDGPNHASNEH-----QHQNQQLVNQTHPNGSYYASLNSGMNGDISSLNN- Arabidopsis_thaliana_AtWRKY20_NT MNRK------------EFQGDCSATGDLTAKHDSRYKLMSPAKLESISIKPEPSPSLFRPVHISASSSSYTGRGFHQNSSISSSELSRPTPPCESIQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERSHDGQ-ITDIIYKGTHDHPKPQPGRRNSGGMAAQEGRDEKGSGVYEVPPSDDGG----EAAASDDDDPFSKRRRMEGAMEIT------ Arabidopsis_thaliana_AtWRKY40 MDSEDPPTSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEYVNKSNERDQSPPKKRKSPAREDCAVIGGVSESSSTDQDECKKQREETVKEKVSRVYYKTEASDTVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPSQIDSNNGLNRHHGGSASTPVAANRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQNH- Arabidopsis_thaliana_AtWRKY50 M------------------------------------------------NADTNLGSSFSDDTHSPDDGALFSGFSHESPSTKTYVAATAKE-KKKIKGRVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPHPRNYYKCSV-DGCPVKKRVERDRDDPSFVITTYEGSHNHSSMN------------------------------------------------------------------ Arabidopsis_thaliana_AtWRKY54 MDDQLVEGYEFATQLQLLLSHVDEMSKILGSFHKTISVLDSVAVSV------------------PAVEGSWNASCGDDSATCDSGESKKKRL-GKGKRGCYTRKTRSHTASSEDRYAWRKYGQKEILNTTFPRSYFRCTHTQGCKATKQVQKQDQDSEMFQITYIGYHTCTANDQTHASEKTLAASTAQNHVNAMV--------------------QNNTSSVTAIDAGMETMMFDDHQ- Arabidopsis_thaliana_AtWRKY65 M------------KARSYNDHESSQETG-----------------------PESPNS-------STFNGMKALI--------SSHSKRSRRS-VEKRVVNVPMKEMEGSTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLTSSTRNGPKPKPEPKPEP----------------EPEVEPEAEEEDTSSTILESPICSVVFR---- Arabidopsis_thaliana_AtWRKY72 MEFDHQELESAKAEMSEVKEENEKLKGMLERIESDYKSLKLRFFDIQEPTLGRSSSPSDPKKEEKTDAGK----------RSSPAPASGGQQ-NHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLTTMASTTSAAASMLLSGSSSSLNFSSTSSTSSNLTETLTKALTSDPSFHSVIAAAISTMVGSNGE- Arabidopsis_thaliana_AtWRKY74 MEEK------AAVELNLLSQQTNDSKSIMVERECKFKRVSSLLSRGQRVPAGPPPDGSASCYSPSISNGSRSFV-SSLSMKSKCHCSKKRKL-RVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSSQSAHT----------------------------------------------------------- Oryza_sativa_OsWRKY2 ADGDLSDVVRASLQLAAVSQHAEQQQQSMVD-----------------ALLPPPPASRTTIEEDTTGDGEELFA--------GAHPIKRRKS-QTKKVVCIPAASGGGGEVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRADPTMLVVTYTSDHNHPWPTHRNALAGSTRPSSSNSSNIRLQ-----------DSTPVHHQSQTGHQEDVIISPSLSFGLFD---- Oryza_sativa_OsWRKY23 M----------ENQLQGDDHDDE-------------------------AAVPSPPPLAAPAASATTSDGHQHGPQAAESGAGNKEKQVMATK-KKASRPRFAFQTRSDNDILDDGYRWRKYGQKAVKNSKHPRSYYRCTH-HTCNVKKQVQRLAKDTSIVVTTYEGVHNHPCEKLMEALTPILKQLQQ---------------------------------------------------- Oryza_sativa_OsWRKY27 M------------NFTLFRDEVQKASEKVHR---------------HHASLGLGSSPDACQCHASKKDGGAAAA-AVPAGDDDRSCMITAAS-TANRPGRVVLRTRCSAPTVKDGCQWRKYGQKTAKGNPWPRGYYRCTGAPGCPVKKQVQRCNHDTSVLVTTYDGVHNHPITPYAAASSSSAAVAMLASSSSSSMPAAQSSWSQRNIQADVVAKAIWDPKFQATVAAAVASYVRDREQ- Oryza_sativa_OsWRKY46 ----------------------------LRFFSETEMAL-------------------------------------DSVPSYPSDLSSRARTPQQRVSPRKEERTWTTDYPYDDGHQWRKYGEKKLSNSNFPRCTYKND--MKCPATKQVQQKTNDPPLFSVTYFNHHTCNSPKIV---------------------------------------------------------------- Oryza_sativa_OsWRKY68 M----------AVQEMLVSSLSSSSQPQQIADQSKFRKVISILDRTARAPPPPPPATSSTSFFSSVTAGEGSVS-KGRSLGGRCHCSKRRKN-RVKRTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPAMLVVTYEGEHRHTLPAPPAAAAVAAMPVSVSTGNGV---------------------------------------------- Oryza_sativa_OsWRKY71 MDSKDPEVAALEAELKRMGAENRQLSEMLAAVAAKYEALQSQFSDMVTASAGGSVSPSRKRKSESLDDGAAAAGYADQTECTSGECKRIREE-CKPKISKLYVHADPSDSVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSAEDNTILVATYEGEHNHGQPPPPLQQNSSGKSAGKPPHAPAAAPAAASEMIRRNLAEQMAMTLTRDPSFKAALVTALSGRILELSP- Oryza_sativa_OsWRKY82_CT --------------------------------------------------------------------------------------------------------------KTSDGYRWRKYGQKIVKGNPNPRSYYRCTH-DGCPVRKHVEKAPDDDNNIVVTYEGKHNHDQPFRNNSSKDGPVPMETTSEQPSTMTTSEIGGEKAVESAQTLISIKTNPKDTSAVVPVQNN-------- Oryza_sativa_OsWRKY82_NT MEEKETEKVEAEKEMEEAKEKEKETKVKVKEEGEKKGKEVPAFLSMSHQAALASVTAQAQIQL------------QTTTPKAMLQPSGTERS-VLEKSASFQSHNHVSVNMVGDGFNWRKYGQKQVKSSENSRSYYRCTN-SNCLAKKKVEHCPDGR-VVEIIYRGTHNHEPPQKTRFVKERVAHITGDDETLGLVNKLEPGAVSEASEQQLFCSSDTEPQPKRSRIETSTPLT------ 'Vigna unguiculata C35020760-augustus0.1 NT' --------------------------------------------------------------------------------------------------------------RSDDGYNWRKYGQKQVKGSENPRSYYKCT---SCPTKKKVERSLDGQ-ITEIVYKGSHNHPKPEFDNDE----------------------------------------PDAKRWRIEGENEGI------ 'Vigna unguiculata C35031083-processed0.0' --------------------------------------------------------------------------------------------------------------TASDGYNWRKYGQKQVKSPTGSRSYYRCT-------------------VIEIVYKSQHSHDPP------------------------------------------------------------------- 'Vigna unguiculata C35036421-augustus0.2' ----------------------------------------------------------------------------------HCHCSKRRKS--------------RMKRIPADEYSWRKYGQKPIKGSPYPRGYYKCS---GCPARKHVERAQDDP-MLIVTYEGEHRHPQP------------------------------------------------------------------- 'Vigna unguiculata C35037167-0.1' M---------------SIQVERSDKDSSLAGLDDKASSMYGQLSHAAEPNSASEPSPV------ATDDGLEGVGFASNDDADDDDSKRRKMELGNIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP------------------------------------SYSLPG------------------------------------------------------------------ 'Vigna unguiculata C35064493-augustus0.2' WSNELVQGMELARKLKEDLRMKDMLQRILSSYEKALLILRC--------------------NASTSLATSQATAL--ESPIEDLHDSKKRKI----------------TPKWMDGYNWRKYGQKDILGAKYPRSYYRCT----CWATKQVQRSDEDPTIFDITYRGKHTCSQGNHAQASQEK---------------------------------------------------------- 'Vigna unguiculata C35066409-augustus0.1' -----------------------------------------------------------------------------------------------PKKTRVSIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCT---LCPVRKQVQRCAEDM-ILITTYEGIHNHPLPATAMACTTSAAASMLQAITS-------------------------NPKFQSVLATALTTYVG----- 'Vigna unguiculata C35072274-augustus0.1' --------------------------------------------------------------------------------------------------------------PLDDGYSWRKYGQKDILGAMYPRGYYRCT---GCMATKQVQRSDEDP-IFEINYRGKHTCTVA------------------------------------------------------------------- 'Vigna unguiculata C35075056-augustus0.1 NT' --------------------------------------------------------------------------------------------------------------RSEDGYNWRKYGEKQVKGSENPRSYYKCT---NCPTKKKVERSLEGH-VTEIVYRGSHNHPKPDDDDLG----------------------------------------PEAKRWKGENENDDY------ 'Vigna unguiculata C35083824-0.2_ORF+1 NT' -------------------------------------------------------------------------------------------------------EQQQQQRRSEDGFNWRKYGQKQVKGSENPRSYYKCT----CSVKKKVEKSLDGQ-ITEIVYKGHHNHPKPQSIRRG------------------------------------------------------------- 'Vigna unguiculata C35083824-augustus0.3 CT' -----------------------------------------------------------------------------------------------VREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCT---GCSVRKHVERAAHDI-AVITTYEGKHNHDVP------------------------------------------------------------------- 'Vigna unguiculata C35083824-augustus0.3 NT' --------------------------------------------------------------------------------------------------------------RSEDGFNWRKYGQKQVKGSENPRSYYKCT---NCSVKKKVEKSLDGQ-ITEIVYKGHHNHPKPDEDNLG----------------------------------------PQSKRWKGDNENDDY------ 'Vigna unguiculata C35084108-augustus0.1' -----------------------------------------------------------------------------------------------NRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCT---GCPVRKQVQRCIDDM-ILITTYEGTHNHPLPATAMASTASAAASFMLAIAS-------------------------DPKFRVAVAAAITSLMN----- 'Vigna unguiculata scaffold10361-augustus0.3' -----------------------------------------------------------------------------------------------------------------DGYSWRKYGQKDILGAKFPRGYYRCT----CLATKQVQRSDEDPTTIEVTY---------------------------------------------------------------------------- 'Vigna unguiculata scaffold1454-processed0.1' -----------------------------------------------------------------------------------------------------------------DGYNWKKYEDKVGKGNENQVSYYKCT----CYVKKKVGRTLEGK-IVEINYQ--------------------------------------------------------------------------- 'Vigna unguiculata scaffold16279-augustus0.5' MDEK---VEMLEAKVRHMKEQNRTLRMMLETMSRKWQKL------------------------------------------------------------QLHVQEINNAQCRQDGYRWKKYGQKKTTKNPSPRAYYKCA----CPVKKKVQISIQDKSIIVATYEGKHNHGFASQHKDGGT------------------------HIKVQECVTSLLKDPNFIASFAEAV---------- 'Vigna unguiculata scaffold2024-augustus0.2' -----------------------------------------------------------------------------------------------AKHHRYAFQTRSPVDVLDDGYQWRKYGKKIVKNNTFPRSYYRCA---ECNVKKQIQRHSDDE-IVVTTYEGTHTHPVD------------------------------------------------------------------- 'Vigna unguiculata scaffold21114-augustus0.2' ----------------------------------------------------------------------------DGEGDESESKRRKLES-LSIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCT---GCTVRKHVERASHDL-SVITTYEGKHNHDVP------------------------------------------------------------------- 'Vigna unguiculata scaffold2161-augustus0.5' -------------------------------------------------------------------------------------------------EPRFCFKTMSDVDVL-DGYKWRKYGQKVVKNTQHPRSYYRCT----CRVKKRVERLAEDPRMVITTY---------------------------------------------------------------------------- 'Vigna unguiculata scaffold26172-augustus0.1' ------------------------------------------------------------------------------------HVSKKRKT--------------MPRRNKEDGYNWRKYGQKDILGAKFPRGYFRCT---GCLATKQVQKSDEDP-IYEITYIGRHTCTQA------------------------------------------------------------------- 'Vigna unguiculata scaffold2619-augustus0.2' -------------------------------------------------------------------------------------------------EPRFAFMTKSEVDHL-DGYKWRKYGQKAVKNSPYPRSYYRCT----CGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSHFALPHQHHHQQ------------------------ASALISNPPFVNSASNFMTTSFGGFGH- 'Vigna unguiculata scaffold29982-processed0.2' -------------------------------------------------------------------------------------------------EPRFAFMTKSEVDHL-DGYRWRKYGQKAVKNSPFPRSYYRCT----CNVKKRVERSFSDPSIVVTTYEGQHTHPSPV------------------------------------------------------------------ 'Vigna unguiculata scaffold32826-processed0.1' M--------------GEVREENERLKKTLERVEKDYHSLQLRFFDILHKDVKLGRSPTEPKKEARIGDMEVVSD-LMNSSEETNQSAKVITD-MPAKRARVSVRARC---TMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQLTCLTSDVRLAKVKVDAEFNAPDPSILYPADGGNMHWFVTACAS-------------------------DPPFSTYSVDGISIPEEERKT- 'Vigna unguiculata scaffold33087-0.0' -----------------------------------------------------------------------------------------------------------------DFWSWRKYGQKPIKGSPYPRGYYKCS----CSAKKQVERCRTDASMLIVTYTSTHNHPCPT------------------------------------------------------------------ 'Vigna unguiculata scaffold37976-0.1' -----------------------------------------------------------------------------------------------AKKTRVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCT----------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold38934-augustus0.2 CT' ---------------------------------------------------------------------------------------------IVYKEPRVVVQTTSDIDIL-DGYRWRKYGQKVVKG-PNP--------------RKHVERASHDLRAVITTYEGKHNHDVPA------------------------------------------------------------------ 'Vigna unguiculata scaffold42631-0.0_ORF+1' --------------------------------------------------------------------------------------------------------------VPSDLWAWRKYGQKPIKGSPYPR--------------KQVERS------------SEHNHPWPTQRNALEQQQQQQQ----------------------------------------------------- 'Vigna unguiculata scaffold42631-augustus0.2' --------------------------------------------------------------------------------------------------------------VPSDLWAWRKYGQKPIKGSPYPR--------------KQVERS-----MLVITYTSEHNHPWPKAKDEQQQQQQQESNSEGNASPVVSANSACVKEENMEDIEKQFEMDESDGLPYKPCLSKALWKAKD- 'Vigna unguiculata scaffold43215-augustus0.2' MDSKEQSSGALVEELKRVSAENKKLTEMLTEMCENYNALRSNLMEYMRKNPDKEQSSSKKRKSESSFN-------NNSAPTDEESCKKPKED-IKTPVSKVYVRTEASDTIVKDGYQWRKYGQKVTRDNPSPRAYFKCS----CPVKKKVQRSVDDQSVLVATY-GEHNHPHPSQMEPNRGVNP-----GSVPCSGSKTEAPEVPQILVEQMAT-------FRAALVAAISGKMLH---- 'Vigna unguiculata scaffold4444-0.1_ORF+1' -------------------------------------------TPTARAPLPPPP---------------------------RCHCSKK-SR-KMRKVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCS----CPARKHVERALDDPAMLVVTY-GEHNHTLSAADATN------------------------------------------------------------- 'Vigna unguiculata scaffold4444-augustus0.2' ----------------------------------------------------------------------------------RCHCSKKSRK--------------MRLRIPPDDYSWRKYGQKPIKGSPHPRGYYKCS---GCPARKHVERALDDP-MLVVTYEGEHNHTLS------------------------------------------------------------------- 'Vigna unguiculata scaffold46551-augustus0.4' --------------------------------------------------------------------------------------------------------------PPSDSWAWRKYGQKPIKGSPYPRGYYRCS---GCPARKQVERSCVDP-MLVVTYSSDHNHPWP------------------------------------------------------------------- 'Vigna unguiculata scaffold4700-augustus0.3' ---EEVPSSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYTRKNGEK-------------------------------ECKKPREETMKPKVSRVYVRTEASDTLIVDGYQWRKYGQKVTRDNPCPRAYFKCS----CPVKKKVQRSVDDQSVLVATYEGEHNHPQAS------------------------VDTPKMQQVLVEQMATSLTTDPNFRAALVAAISGRLLHN--- 'Vigna unguiculata scaffold5329-augustus0.1' -----------------------------------------------------------------------------------------------KKTVRVPAISTKIADIPSDEFSWRKYGQKPIKGSPYPRGYYKCS----CPARKHVERASDDPTMLVVTY-GEHRHSIQTALQEN------------------------------------------------------------- 'Vigna unguiculata scaffold53935-processed0.0 CT' -----------------------------------------------------------------------------------------------VTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCT----CNVRKHVERASTDPKAVITTY-GKHNHDVPAARNSS------------------------------------------------------------- 'Vigna unguiculata scaffold53935-processed0.0 NT' --------------------------------------------------------------------------------------------------------------PADDGYNWRKYGQKQVKGSEYPRSYYKCT----CLVKKKVERAPDGH-ITEIIYKGQHNHEKPQANRRV------------------------------------------------------------- 'Vigna unguiculata scaffold58478-processed0.0' -----RLAFRTQSELEIM----------------------------------------------------------DDGYKWRKYGKKSVKN-ANRLGPRIAFRTQSELEIMDDGYKWRKYGKKSVKSSPNLRNYYKCS---GCSVKKRVERDREDS-YVITTYEGVHNHQSP------------------------------------------------------------------- 'Vigna unguiculata scaffold58860-augustus0.1' --SIHLAGEVLVEELQRLNSENKMLTETLKHVCESYVALQKHLSEFNRLKNANFASLKRKVES---ENCSNLFCVNAHTECSSEEFKKPKQSSTTPKVQKVFVRTDASDSLYVDGYQWRKYGQKVTRDNPSPRAYFKCS----CPVKKKVQRSVEDRRVLVTTYEGEHNHGEEHITANGKSESG-----GRIEALELMAQKSLMQQFLVQQMATSLTRDPNFTAALASAISGRILDH--- 'Vigna unguiculata scaffold59202-augustus0.1' --SSLHTDMVLEEELQRLRRENKRLTEMLTHLCDSYMVLQKQLTQLMNTNLEQEESRKRKAES---ECCTNKFGVVNNNNNNNGEFKRYKDFSSSPKVQKVLVKTEASNSLYVDGYQWRKYGQKVTRDNPSPRAYFRCS----CPVKKKVQRSLEDPTILVTTYEGEHNHCNER------------------------AQKSSIQQFLVQQMATSLTRDPNFTTALATAISGKILEA--- 'Vigna unguiculata scaffold60128-processed0.0' -----------------------------------------------------------------------------------------------------------------DAWAWRKYGQKPIKGSPYPRSYYRCS----CLARKQVERSHLDPAVFLVTYTAEHSHPHPT------------------------------------------------------------------ 'Vigna unguiculata scaffold60168-augustus0.1' ------------------------------------------------------------------------------------------KN-RVKKTVRVPAISSKIADI-PDEYSWRKYGQKPIKGSPYPRGYYKCS----CPARKHVERAPDDPAMLIVTYEGEHRHAVQA------------------------------------------------------------------ 'Vigna unguiculata scaffold62008-0.1_ORF-3' -----------------------------------------------------------------------------------------------------------------------------------CRSYYRCTF-RNCWATKQVQRSDEDPTIFDITYETSCLSTQTNTMEIHILSLSLS-----------RSQRGGLEQSPMDQPATATRTRSCLRCAFAESWGTPVAGTTT- 'Vigna unguiculata scaffold63072-0.0' MDEK---VESLKSELQRVREENNTLRVMFEVLSSKYTKLESHLQEI-------------------------------NKEQHKGMKRRRLEFPTAKKPLQIFVRTHPMDSLIVDGYQWRKYGQKVTKDNASPRAYFRCS----CPAKKKVQRCLHDKSILVATYDGEHNHGALH------------------------------------------------------------------ 'Vigna unguiculata scaffold66921-0.1' ------------------------------------------------------------------------------SKQWPSELSQYLYD-SFEVKDRVAFKTKSEIEIMDDGFKWRKYGKKMVKNSPNPRNYYRCS---GCSVKKVVERDKDDP----------------------------------------------------------------------------------- 'Vigna unguiculata scaffold6727-0.0' ------------------------------------------------------------------------------------------------------------------------Y--------SFCRSYYKCV----CPVRKHVERAANDMKAVLTTYEGKHNHDVPL------------------------------------------------------------------ 'Vigna unguiculata scaffold70584-0.1' --------------------------------------------------------------------------------------------------------------LSADLWAWRKYGQKPIKGSPYPRNYYRCS---GCMARKQVERSNTET-MFIVTYTGDHSHPRP------------------------------------------------------------------- 'Vigna unguiculata scaffold73463-0.1_ORF+1' I-TELLLGLDHATQLKFLLQNAKEVTNVQRSFAQTLSMLTS-----------SQPEDEVAQNLLSGEDASQVASI------EDSTESRKRSL-AKDRRGSYKRKTEQTWTTIDDNRAWRKYGQKDILNSQFPRSYFRCT----CKATKQVQRLEENPDMYNITYIGFHTCKAPQDLNVPNEEQQHECPRSQSP--------------IVKQECLNDETDPSDLKDFKPALSEFGHEF--- 'Vigna unguiculata scaffold81313-0.1_ORF+1' L-----------------------------------QQLQQQSTRTARAPVPPPP---------------------------RCHCSKK-SR-KMKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCS----CPARKHVERALDDPSMLVVTY-GEHNHTLSAVEATT------------------------------------------------------------- 'Vigna unguiculata scaffold81313-augustus0.2' ------------------------------------------------------------------------------------------KM-RLKRVVRVPAISLKMADI-PDDYSWRKYGQKPIKGSPHPRGYYKCS----CPARKHVERALDDPSMLVVTYEGEHNHTLSA------------------------------------------------------------------ 'Vigna unguiculata scaffold85153-augustus0.2 CT' -----------------------------------------------------------------------------------------------IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYGFTLR---GCPVRKHVERASHDP-AVITTYEGKHNHDVP------------------------------------------------------------------- 'Vigna unguiculata scaffold85153-augustus0.2 NT' V--------------------------------------------------------------------------------------------DGYNWRKYQKRSYYKSEVSDDGYNWRKYGQKHVKGSEFPRSYYKCT---NCEVKKLFERSHDGQ-ITEIIYKGTHDHPKPEVDDDD----------------------------------------PLSKRRKMEFANADI------ 'Vigna unguiculata scaffold86127-augustus0.1' ------------------------------------------------------------------------------CNQWPFELSEYLQD-SFVVRERFAFKTISEIEVLDDGYRWRKYGKKMVKNNPNPRNYYRCS---GCAVKKRVERDKDDP-CVITTYEGNHTHPSS------------------------------------------------------------------- 'Vigna unguiculata scaffold87788-augustus0.3' ----------------------------------------------------------------------------VHDNEDPESKRQKKDS-DSTRESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCS---GCPVKKHVERASHDS-IVITTYEGQHDHELP------------------------------------------------------------------- 'Vigna unguiculata scaffold88185-augustus0.3' -----------------------------------------------------------------------------------------------MRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCT---GCPVRKQVQRCAEDR-ILVTTYEGTHNHPLPAMAMASTTTAAASMLLAITA-------------------------DPNFTAVLAAAISSIIG----- 'Vigna unguiculata scaffold89014-processed0.1' ----------------------------------------------------------------------------------RCHCSKKRKH--------------RMKRIPPDDYSWRKYGQKPIKGSPHPRGYYKCS---GCPARKHVERCLEEP-MLIVTYEGEHNHPKL------------------------------------------------------------------- 'Vigna unguiculata scaffold89209-0.0' -----------------------------------------------------------------------------------------------VRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPSYVPLCG----------------------------------------------------------------------------------------------------- 'Vigna unguiculata scaffold89993-0.0' --------------------------------------------------------------------------------EQKNADPAGVNE-ASLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCT---GCPVRKQVQRCVEDK-VLITTYEGNHNHPLP------------------------------------------------------------------- 'Vigna unguiculata scaffold90447-0.1' -----------------------------------------------------------------------------------------------------------------DGYSWRKYGQKNILNAKYPRSYYRCT----CCATKQVQRSEEDPNVFDISY---------------------------------------------------------------------------- 'Vigna unguiculata scaffold90973-augustus0.1' -----------------------------------------------------------------------------------------------PREPRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCT----CGVKKRVERSSEDPTVVVTTY-GQHTHPCPATSRASLQQQQHQQ----------------------------------------------------- 'Vigna unguiculata scaffold93568-augustus0.1 CT' ----------------------------------------------------------------------------------------------PVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT---GCKVRKHVERASTDP-AVITTYEGKHNHDVP------------------------------------------------------------------- 'Vigna unguiculata scaffold93568-augustus0.1 NT' --------------------------------------------------------------------------------------------------------------PADDGYNWRKYGQKQVKGSEFPRSYYKCT---HCPVKKKVERSLEGH-VTAIIYKGEHNHQRPDEKNVE----------------------------------------PDPKRSKTEATNLD------- 'Vigna unguiculata scaffold9384-processed0.0 CT' ----------------------------------------------------------------------------------------------IYKEPRIIVQTTSEVDLL-DGYRWRKYGQKVVKGNPYPRSYYKCT----CNVRKHVERASTDPKAVITTYEGKHNHDVPA------------------------------------------------------------------ 'Vigna unguiculata scaffold9384-processed0.0 NT' -----------------------------------------------------------------------------------------------------------------DGYNWRKYGQKHVKGSDFSRSYYKCT----CPVKKKLERSLEGH-VTAI------------------------------------------------------------------------------ 'Vigna unguiculata scaffold93858-processed0.0' -----------------------------------------------------------------------------------------------TRVPRFAFQTRSADDVLDDGYRWRKYGQKSVKNSTYPRSYYRCT---TCNVKKQVQRLSKDT-IVVTTYEGIHNHPCE------------------------------------------------------------------- 'Vigna unguiculata scaffold94441-augustus0.1 CT' -----------------------------------------------------------------------------------------------VREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCT----CMVRKHVERASHNLKFVLTTY-GKHNHEVPTARTSN------------------------------------------------------------- 'Vigna unguiculata scaffold94441-augustus0.1 NT' --------------------------------------------------------------------------------------------------------------TSEDGYNWRKYGQKQVKGSEYPRSYYKCT----CQVKKKVERSHDGQ-ITEIIYKGNHNHVKPHSSHRG------------------------------------------------------------- 'Vigna unguiculata scaffold94471-augustus0.2' ------------------------------------SRVPAI---SSKADIP--------------------------------------KS-RVKQTIRVPAISSKIADI-PDEYSWRKYGQKPIKGSPFPRGYYKCS----CPARKHVERAQDDPKMLIVTYEGEHRHALPL------------------------------------------------------------------ 'Vigna unguiculata scaffold94837-processed0.0' -----------------------------------------------------------------------------------------------LRRTRVSVRARSEAPVICDGCQWRKYGQKISKGNPCPRAYYRCT---GCPVRKQVQRCTEDK-VLITTYEGNHNHPLPATVMANSTSAAAAMLLAVAS-------------------------NPNFTVALAAAISSIIG----- 'Vigna unguiculata scaffold95108-augustus0.1 CT' -----------------------------------------------------------------------------------------------YKEPRIVMQSFTDSEVILDGFRWRKYGQKVVKGNPYPRSYYRCT----CNVRKHVERAIDDPRSFVTTYEGKHNHEMPL------------------------------------------------------------------ 'Vigna unguiculata scaffold95149-processed0.0' --------------------------------------------------------------------------------------------------------------LVEDGYVWRKYGQKMTLNAKYLRSYYRCT---GCHAMKQVQRIQDVP-LYRTTYYGHHTCKSP------------------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 22580 ] BEGIN TREES; TITLE Cowpea_bean__WRKY; LINK TAXA = TaxaForAnalysisStep22580; TREE Cowpea_WRKY = [&R] (('Vigna unguiculata C35031083-processed0.0':1.9690425054252785,Oryza_sativa_OsWRKY82_NT:0.14083984095381105):0.18339625963661654,('Vigna unguiculata scaffold53935-processed0.0 NT':1.00000050002909E-6,((('Vigna unguiculata C35020760-augustus0.1 NT':0.2357221476155354,(('Vigna unguiculata C35083824-augustus0.3 NT':1.00000050002909E-6,'Vigna unguiculata C35083824-0.2_ORF+1 NT':0.4444591251834038):0.3257683604083565,'Vigna unguiculata C35075056-augustus0.1 NT':0.07588140342871628):0.26389366597756225):0.3103010717295853,'Vigna unguiculata scaffold93568-augustus0.1 NT':0.038525434659900215):0.3380544154708237,(((((Oryza_sativa_OsWRKY71:0.5402695072501257,(Arabidopsis_thaliana_AtWRKY40:0.3026842930211638,('Vigna unguiculata scaffold43215-augustus0.2':0.16404896721811937,(('Vigna unguiculata scaffold59202-augustus0.1':0.2605411583313806,'Vigna unguiculata scaffold58860-augustus0.1':0.2166581097908676):0.45516877257729277,'Vigna unguiculata scaffold4700-augustus0.3':0.04573579514494218):0.07987041243513153):0.04647965075146102):0.2821643389422975):0.08676052607506925,('Vigna unguiculata scaffold63072-0.0':0.599578783151766,'Vigna unguiculata scaffold16279-augustus0.5':1.2094776801305895):0.0806347773683964):0.2706152667986502,(((('Vigna unguiculata scaffold58478-processed0.0':0.7990705698377266,((Arabidopsis_thaliana_AtWRKY50:0.6027184598079467,'Vigna unguiculata scaffold66921-0.1':0.15980774913670462):0.08801349289244534,'Vigna unguiculata scaffold86127-augustus0.1':0.23317924816172964):0.31103367150813693):0.36966729396525916,(('Vigna unguiculata scaffold90973-augustus0.1':1.00000050002909E-6,('Vigna unguiculata scaffold29982-processed0.2':0.09626835350705404,'Vigna unguiculata scaffold2619-augustus0.2':1.00000050002909E-6):0.28028503105649116):0.4602604166587559,'Vigna unguiculata scaffold2161-augustus0.5':0.8707817275837996):1.00000050002909E-6):0.19496961155829656,((('Vigna unguiculata scaffold89209-0.0':0.5297174674804908,Oryza_sativa_OsWRKY23:0.09797669161338748):0.19376937863491966,('Vigna unguiculata scaffold93858-processed0.0':1.00000050002909E-6,'Vigna unguiculata scaffold2024-augustus0.2':0.7157409085939502):0.3643060028660446):0.9491998605274016,(Oryza_sativa_OsWRKY46:3.5510992342523844,(('Vigna unguiculata scaffold73463-0.1_ORF+1':1.0170125502377128,(('Vigna unguiculata scaffold90447-0.1':0.4377797695863313,'Vigna unguiculata scaffold95149-processed0.0':2.833389199985722):0.163692556488625,(('Vigna unguiculata scaffold26172-augustus0.1':0.17273195316141923,('Vigna unguiculata C35072274-augustus0.1':0.894234672316364,'Vigna unguiculata scaffold10361-augustus0.3':0.11958690209275605):1.00000050002909E-6):0.3229363934887544,('Vigna unguiculata C35064493-augustus0.2':0.15940437899523344,'Vigna unguiculata scaffold62008-0.1_ORF-3':3.6076745681223756):1.00000050002909E-6):0.39361928979851424):0.5294417427077285):1.00000050002909E-6,Arabidopsis_thaliana_AtWRKY54:1.0904483209447668):1.00000050002909E-6):1.543317254270919):0.2775282880006823):0.5665119335473957,(('Vigna unguiculata scaffold94837-processed0.0':1.00000050002909E-6,(('Vigna unguiculata scaffold89993-0.0':0.18296725820152404,'Vigna unguiculata scaffold88185-augustus0.3':1.00000050002909E-6):0.10355154499916293,((Arabidopsis_thaliana_AtWRKY72:1.00000050002909E-6,('Vigna unguiculata scaffold32826-processed0.1':1.031016033815858,'Vigna unguiculata scaffold37976-0.1':1.00000050002909E-6):0.17806250546645508):0.3114909937137365,((Oryza_sativa_OsWRKY27:1.0904841397963627,'Vigna unguiculata C35084108-augustus0.1':0.036829279675278694):0.061127315800123275,'Vigna unguiculata C35066409-augustus0.1':0.33498878422479766):0.11664105627008485):0.07314892083156624):0.16439194386255213):0.5258896260205638,(((('Vigna unguiculata scaffold70584-0.1':0.8964885005910195,(('Vigna unguiculata scaffold33087-0.0':0.5328183303793861,Oryza_sativa_OsWRKY2:1.00000050002909E-6):0.32115659882617453,('Vigna unguiculata scaffold42631-0.0_ORF+1':1.00000050002909E-6,('Vigna unguiculata scaffold42631-augustus0.2':0.5516788432927964,((Arabidopsis_thaliana_AtWRKY65:0.23450769798426707,'Vigna unguiculata scaffold46551-augustus0.4':1.00000050002909E-6):0.38650741837829,'Vigna unguiculata scaffold60128-processed0.0':0.9004928535264016):1.0238547417955148):0.12209537786888526):0.4236774923579845):0.3840096495615162):0.3986376453197364,(((Oryza_sativa_OsWRKY68:0.14143260024238247,(('Vigna unguiculata scaffold5329-augustus0.1':0.21688749101460397,'Vigna unguiculata scaffold60168-augustus0.1':1.00000050002909E-6):0.03257996588580352,(('Vigna unguiculata scaffold4444-augustus0.2':0.2399460214926389,'Vigna unguiculata scaffold4444-0.1_ORF+1':1.00000050002909E-6):1.00000050002909E-6,('Vigna unguiculata scaffold81313-0.1_ORF+1':1.00000050002909E-6,'Vigna unguiculata scaffold81313-augustus0.2':0.03818328466846577):0.1923666779583146):0.20419781642279597):0.08738895401436791):0.27449514091911503,'Vigna unguiculata scaffold94471-augustus0.2':0.1727382699459646):0.1557881542147673,('Vigna unguiculata C35036421-augustus0.2':1.00000050002909E-6,(Arabidopsis_thaliana_AtWRKY74:0.23510687123035692,'Vigna unguiculata scaffold89014-processed0.1':0.07199885699687854):0.2554855268140982):0.057440017070570525):0.20173383789249244):0.9486759207119487,Oryza_sativa_OsWRKY82_CT:0.528386372015052):0.42079710205125304,('Vigna unguiculata scaffold87788-augustus0.3':0.6738028221711635,((('Vigna unguiculata scaffold21114-augustus0.2':1.00000050002909E-6,'Vigna unguiculata scaffold94441-augustus0.1 CT':0.3568544931027123):1.00000050002909E-6,((('Vigna unguiculata scaffold95108-augustus0.1 CT':0.6346373183314207,'Vigna unguiculata scaffold38934-augustus0.2 CT':1.00000050002909E-6):0.07815618754232474,('Vigna unguiculata scaffold9384-processed0.0 CT':1.00000050002909E-6,('Vigna unguiculata scaffold53935-processed0.0 CT':0.06734610236937738,'Vigna unguiculata scaffold93568-augustus0.1 CT':0.04428188927629696):0.07507525677389884):0.14800577971561535):0.1290236879305402,('Vigna unguiculata scaffold6727-0.0':1.4321273995362285,'Vigna unguiculata C35083824-augustus0.3 CT':1.00000050002909E-6):0.25710960338980177):1.00000050002909E-6):0.046831714207461565,(Arabidopsis_thaliana_AtWRKY20_CT:1.00000050002909E-6,('Vigna unguiculata scaffold85153-augustus0.2 CT':1.00000050002909E-6,'Vigna unguiculata C35037167-0.1':0.08239889438464851):0.2865262920572681):0.22942757997165678):1.00000050002909E-6):0.3501171242934689):0.32826344840430177):0.2072491644827745):0.1527276997571283):0.9584039455088191,'Vigna unguiculata scaffold1454-processed0.1':2.0036764955393696):0.6752309264988166,('Vigna unguiculata scaffold94441-augustus0.1 NT':0.1800446364099622,(Arabidopsis_thaliana_AtWRKY20_NT:0.7617336020836715,'Vigna unguiculata scaffold85153-augustus0.2 NT':0.7987097663063235):0.8356982775397758):0.09802222744993658):0.0792697515221045):0.277050546666291):0.33309817883338266,'Vigna unguiculata scaffold9384-processed0.0 NT':1.213777820568436)OROOT; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr107969] END;