#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 20, 2025; 4:45 GMT

TreeBASE (cc) 1994-2008

Study reference:
Belahbib H., Renard E., Santini S., Jourda C., Clavery J., Borchiellini C., & Le
bivic A. 2018. New Genomic Data and Analyses Challenge the Traditional Vision of
Epithelium Evolution in Sponges and Ctenophores. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S22408]

[ The following blocks are input data for analysis step 22813 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep22813;
        DIMENSIONS NTAX=17;
        TAXLABELS
            A_queenslandica
            A_vastus
            B_floridae
            C_intestinalis
            D_melanogaster
            G_gallus
            L_complicata
            M_leidyi
            M_musculus
            N_vectensis
            O_lobularis
            O_minuta
            'O sp.SN-2011'
            P_ficiformis
            S_ciliatum
            S_coactum
            T_adhaerens
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M45573]

	TITLE Character_Matrix_figure_1B_tree;
	LINK TAXA = TaxaForAnalysisStep22813;
	DIMENSIONS NCHAR=83;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                           10        20        30        40        50        60        70        80   ]
[                            .         .         .         .         .         .         .         .   ]
A_queenslandica     KRKKKYSLSDTVLGR------GGVGRSNE-HIEIHANLYAYDEEGG-EQDTSVNNGNHDNTMDHSPIV--NEGRYS------P
A_vastus            DEKMYSVQVYEN--------------EESTGENMLGVVGMYSYEGGGEV--------------------NVEATGEGKSIEEP
B_floridae          KKQLKAATTKYL--------------AVDGHDDVRENIISYNDEGGGEED---QESYDIRKLQK-P-DRESPTRSKRP--VEP
C_intestinalis      RRRQQAGLEKEV--------------LLD-DDDVRENLQAYHDEGGGEED---NDGYDISALQAQPPNTGKPKVV--D--VQP
D_melanogaster      QKKQKNGWHEK-----------------D-IDDIRETIINYEDEGGGERD---TD-YDLNVLRTQPF-YEEK--------YKD
G_gallus            RRR---KVEKEP--------------LLPPEDDMRDNVYNYDEEGGGEED---QD-YDLSQLHRG-LDAR-PEVIRND--VAP
L_complicata        KQALRATELPVPAPR---NKVSLVFKNDEPKNERAENVIEYCEEGGGEN----RDVPFDINLLLQEITRPHSRMSQSSSEIYP
M_leidyi            IKRNKGKDKKAA--------------NID-----FDNAVNGARLGSNKRM--KGQLHLQDNICMNPI--NISNLDVDSKISYP
M_musculus          RRR---TVVKEP--------------LLPPDDDTRDNVYYYDEEGGGEED---QD-FDLSQLHRG-LDAR-PEVTRND--VAP
N_vectensis         KRRPEPVVVYAD--------------STD-TGHVHDNVRLYHDDGGGEED---NLGYDITKLMKYTY-IETTIAPPS--VAPS
O_lobularis         AEKPPVVLTSVR-----------VTQRRP-GSDRFQTVVSYGEEGGGEKD----NALFAVTSFVNRG--AASRSPQST----P
O_minuta            KEKRYSVQVYEN--------------R----ENFMPEIRRYQFEGGGEG--------------------QTGTITGTKMPIEP
'O sp.SN-2011'      KQQPPVVLTSVR----------TTNYQQN-GSNRFEAVVSYMEEGGGEKD----NAAFAETTLTAEVARSTSRTPQST----P
P_ficiformis        KKSKKFKLTAPL-------------ESLD-DFEVHANVYHYNEEGG-EDDTYVNTEESEEIRAMEHPL---RETRESIERIPS
S_ciliatum          KKAIQRELEPVPAIQDHEYEVTTVYKSKE------DDVLPYSEEGGGEI----RDLPFDIDLLLREIRRPNSVLSCSSSDVYP
S_coactum           KRALELE---SPSSTCNTGKTTMVFTNKDPRS--PDNVLTYCEEGGGEI----KDVQFDIDVLLREIRRPDSSLSQSSVEVYP
T_adhaerens         KRKIREKLEYAK--------------KGS------ANIATYRIEGGGEED---VDNYDLNILKNPLP-DSISSLPVKIPLSPS
;
END;

[ The following blocks are output data for analysis step 22813 ]
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 29 from search (criterion: minimize Tree value using character matrix)' = [&R] (((T_adhaerens,P_ficiformis),(((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),((((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus)),N_vectensis))),A_queenslandica);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110981]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 4 from search (criterion: minimize Tree value using character matrix)' = [&R] ((C_intestinalis,(M_musculus,G_gallus)),((D_melanogaster,B_floridae),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110956]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 22 from search (criterion: minimize Tree value using character matrix)' = [&R] (D_melanogaster,((C_intestinalis,(((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis),(M_musculus,G_gallus))),B_floridae));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110974]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 20 from search (criterion: minimize Tree value using character matrix)' = [&R] (B_floridae,(D_melanogaster,((C_intestinalis,(M_musculus,G_gallus)),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110972]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 18 from search (criterion: minimize Tree value using character matrix)' = [&R] ((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),(((D_melanogaster,B_floridae),(C_intestinalis,(M_musculus,G_gallus))),N_vectensis));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110970]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 23 from search (criterion: minimize Tree value using character matrix)' = [&R] (((A_queenslandica,(T_adhaerens,P_ficiformis)),((((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus)),N_vectensis)),((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110975]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 1 from search (criterion: minimize Tree value using character matrix)' = [&R] ((((D_melanogaster,B_floridae),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis)),C_intestinalis),(M_musculus,G_gallus));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110953]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 15 from search (criterion: minimize Tree value using character matrix)' = [&R] (((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),(((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus))),N_vectensis);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110967]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 9 from search (criterion: minimize Tree value using character matrix)' = [&R] (((D_melanogaster,B_floridae),((M_musculus,G_gallus),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis))),C_intestinalis);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110961]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 10 from search (criterion: minimize Tree value using character matrix)' = [&R] ((M_musculus,(((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis),((D_melanogaster,B_floridae),C_intestinalis))),G_gallus);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110962]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 24 from search (criterion: minimize Tree value using character matrix)' = [&R] ((A_queenslandica,(T_adhaerens,P_ficiformis)),(((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),((((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus)),N_vectensis)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110976]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 19 from search (criterion: minimize Tree value using character matrix)' = [&R] ((B_floridae,((C_intestinalis,(M_musculus,G_gallus)),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis))),D_melanogaster);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110971]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 11 from search (criterion: minimize Tree value using character matrix)' = [&R] (M_musculus,((((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis),((D_melanogaster,B_floridae),C_intestinalis)),G_gallus));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110963]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 62 from search (criterion: minimize Tree value using character matrix)' = [&R] (O_lobularis,('O sp.SN-2011',((A_vastus,O_minuta),(((S_coactum,L_complicata),S_ciliatum),(((A_queenslandica,(T_adhaerens,P_ficiformis)),(((D_melanogaster,B_floridae),(C_intestinalis,(M_musculus,G_gallus))),N_vectensis)),M_leidyi)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110982]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 6 from search (criterion: minimize Tree value using character matrix)' = [&R] ((((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis),((D_melanogaster,B_floridae),C_intestinalis)),(M_musculus,G_gallus));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110958]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 27 from search (criterion: minimize Tree value using character matrix)' = [&R] (((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),((A_queenslandica,(T_adhaerens,P_ficiformis)),((((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus)),N_vectensis))),M_leidyi);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110979]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 5 from search (criterion: minimize Tree value using character matrix)' = [&R] (C_intestinalis,(((D_melanogaster,B_floridae),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis)),(M_musculus,G_gallus)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110957]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 13 from search (criterion: minimize Tree value using character matrix)' = [&R] ((D_melanogaster,B_floridae),((C_intestinalis,(M_musculus,G_gallus)),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110965]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 12 from search (criterion: minimize Tree value using character matrix)' = [&R] (((D_melanogaster,B_floridae),(C_intestinalis,(M_musculus,G_gallus))),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110964]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 21 from search (criterion: minimize Tree value using character matrix)' = [&R] ((D_melanogaster,(C_intestinalis,(((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis),(M_musculus,G_gallus)))),B_floridae);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110973]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 17 from search (criterion: minimize Tree value using character matrix)' = [&R] (((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),((D_melanogaster,B_floridae),(C_intestinalis,(M_musculus,G_gallus)))),N_vectensis);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110969]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 26 from search (criterion: minimize Tree value using character matrix)' = [&R] ((A_queenslandica,(T_adhaerens,P_ficiformis)),(((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(((D_melanogaster,B_floridae),(C_intestinalis,(M_musculus,G_gallus))),N_vectensis)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110978]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 3 from search (criterion: minimize Tree value using character matrix)' = [&R] (M_musculus,((((D_melanogaster,B_floridae),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis)),C_intestinalis),G_gallus));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110955]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 14 from search (criterion: minimize Tree value using character matrix)' = [&R] ((C_intestinalis,(((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis),(M_musculus,G_gallus))),(D_melanogaster,B_floridae));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110966]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 16 from search (criterion: minimize Tree value using character matrix)' = [&R] ((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),((((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus)),N_vectensis));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110968]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 25 from search (criterion: minimize Tree value using character matrix)' = [&R] (((A_queenslandica,(T_adhaerens,P_ficiformis)),(((D_melanogaster,B_floridae),(C_intestinalis,(M_musculus,G_gallus))),N_vectensis)),((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110977]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 7 from search (criterion: minimize Tree value using character matrix)' = [&R] ((((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus)),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110959]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 28 from search (criterion: minimize Tree value using character matrix)' = [&R] ((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),(((A_queenslandica,(T_adhaerens,P_ficiformis)),((((D_melanogaster,B_floridae),C_intestinalis),(M_musculus,G_gallus)),N_vectensis)),M_leidyi));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110980]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 8 from search (criterion: minimize Tree value using character matrix)' = [&R] (((D_melanogaster,B_floridae),C_intestinalis),(((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis),(M_musculus,G_gallus)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110960]


END;
BEGIN TREES;
      TITLE heuristic_tree_alignment_fig_1B;
      LINK TAXA = TaxaForAnalysisStep22813;
      TREE 'Tree 2 from search (criterion: minimize Tree value using character matrix)' = [&R] ((M_musculus,(((D_melanogaster,B_floridae),((((((S_coactum,L_complicata),S_ciliatum),((A_vastus,O_minuta),('O sp.SN-2011',O_lobularis))),M_leidyi),(A_queenslandica,(T_adhaerens,P_ficiformis))),N_vectensis)),C_intestinalis)),G_gallus);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110954]


END;