#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 11:57 GMT TreeBASE (cc) 1994-2008 Study reference: Salunke R., Mourier T., Banerjee M., Pain A., & Shanmuga D. 2018. Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii. PLoS Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22877] [ The following blocks are input data for analysis step 23074 ] BEGIN TAXA; TITLE TaxaForAnalysisStep23074; DIMENSIONS NTAX=495; TAXLABELS Arabidopsis_thaliana_AT2G07671 Arabidopsis_thaliana_AT2G07698 Arabidopsis_thaliana_AT2G33040 Arabidopsis_thaliana_AT5G08670 Arabidopsis_thaliana_AT5G13450 Arabidopsis_thaliana_AT5G47030 Babesia_bovis_BBOVI002640 Babesia_bovis_BBOVI004130 Babesia_bovis_BBOVII004850 Babesia_bovis_BBOVII005910 Babesia_bovis_BBOVIII000600 Babesia_bovis_BBOVIII000730 Babesia_bovis_BBOVIII001940 Babesia_bovis_BBOVIII002130 Babesia_bovis_BBOVIII002980 Babesia_bovis_BBOVIII003520 Babesia_bovis_BBOVIII004400 Babesia_bovis_BBOVIII004620 Babesia_bovis_BBOVIII005120 Babesia_bovis_BBOVIII007280 Babesia_bovis_BBOVIII007460 Babesia_bovis_BBOVIII007490 Babesia_bovis_BBOVIV001290 Babesia_bovis_BBOVIV003000 Babesia_bovis_BBOVIV005350 Babesia_bovis_BBOVIV005830 Babesia_bovis_BBOVIV007710 Babesia_bovis_BBOVIV008130 Babesia_bovis_BBOVIV008470 Chlamydomonas_reinhardtii_XP001691632.1 Chlamydomonas_reinhardtii_XP001695985.1 Chlamydomonas_reinhardtii_XP001698736.1 Chlamydomonas_reinhardtii_XP001699641.1 Chlamydomonas_reinhardtii_XP001700627.1 Chlamydomonas_reinhardtii_XP001701531.1 Chlamydomonas_reinhardtii_XP001702609.1 Chromera_velia_Cvel10158 Chromera_velia_Cvel1249 Chromera_velia_Cvel13170 Chromera_velia_Cvel13917 Chromera_velia_Cvel14255 Chromera_velia_Cvel16485 Chromera_velia_Cvel17276 Chromera_velia_Cvel17295 Chromera_velia_Cvel17380 Chromera_velia_Cvel17739 Chromera_velia_Cvel18898 Chromera_velia_Cvel18921 Chromera_velia_Cvel20402 Chromera_velia_Cvel21091 Chromera_velia_Cvel21389 Chromera_velia_Cvel21479 Chromera_velia_Cvel2187 Chromera_velia_Cvel23801 Chromera_velia_Cvel28758 Chromera_velia_Cvel33208 Chromera_velia_Cvel4217 Chromera_velia_Cvel5582 Chromera_velia_Cvel5893 Chromera_velia_Cvel5942 Chromera_velia_Cvel9679 Chromera_velia_Cvel9763 Chromera_velia_Cvel9927 Cryptosporidium_hominis_Chro.20148 Cryptosporidium_hominis_Chro.60082 Cryptosporidium_muris_CMU001170 Cryptosporidium_muris_CMU002850 Cryptosporidium_muris_CMU006100 Cryptosporidium_muris_CMU008320 Cryptosporidium_muris_CMU008950 Cryptosporidium_muris_CMU008960 Cryptosporidium_muris_CMU009020 Cryptosporidium_muris_CMU009570 Cryptosporidium_muris_CMU011400 Cryptosporidium_muris_CMU016520 Cryptosporidium_muris_CMU017340 Cryptosporidium_muris_CMU018280 Cryptosporidium_muris_CMU022710 Cryptosporidium_muris_CMU025000 Cryptosporidium_muris_CMU026200 Cryptosporidium_muris_CMU027630 Cryptosporidium_muris_CMU028470 Cryptosporidium_muris_CMU029630 Cryptosporidium_muris_CMU038530 Cryptosporidium_parvum_Cgd21360 Cryptosporidium_parvum_Cgd6610 Eimeria_tenella_ETH00000145 Eimeria_tenella_ETH00004265 Eimeria_tenella_ETH00005270 Eimeria_tenella_ETH00006505 Eimeria_tenella_ETH00007240 Eimeria_tenella_ETH00007500 Eimeria_tenella_ETH00007515 Eimeria_tenella_ETH00008250 Eimeria_tenella_ETH00015200 Eimeria_tenella_ETH00015495 Eimeria_tenella_ETH00017010 Eimeria_tenella_ETH00017205 Eimeria_tenella_ETH00017240 Eimeria_tenella_ETH00017665 Eimeria_tenella_ETH00023385 Eimeria_tenella_ETH00026155 Eimeria_tenella_ETH00032380 Eimeria_tenella_ETH00034330 Eimeria_tenella_ETH00038660 Eimeria_tenella_ETH00041215 Hammondia_hammondi_HHA201800 Hammondia_hammondi_HHA204400 Hammondia_hammondi_HHA208440 Hammondia_hammondi_HHA214930 Hammondia_hammondi_HHA215610 Hammondia_hammondi_HHA218940 Hammondia_hammondi_HHA223040 Hammondia_hammondi_HHA225730 Hammondia_hammondi_HHA226000 Hammondia_hammondi_HHA231410 Hammondia_hammondi_HHA231910 Hammondia_hammondi_HHA245450 Hammondia_hammondi_HHA247410 Hammondia_hammondi_HHA249720 Hammondia_hammondi_HHA260180 Hammondia_hammondi_HHA261950 Hammondia_hammondi_HHA263080 Hammondia_hammondi_HHA263990 Hammondia_hammondi_HHA268830 Hammondia_hammondi_HHA270360 Hammondia_hammondi_HHA282180 Hammondia_hammondi_HHA284540 Hammondia_hammondi_HHA285510 Hammondia_hammondi_HHA290030 Hammondia_hammondi_HHA310180 Hammondia_hammondi_HHA310360 Hammondia_hammondi_HHA314820 Homo_sapiens_Hsa498 Homo_sapiens_Hsa506 Homo_sapiens_Hsa509 Homo_sapiens_Hsa513 Homo_sapiens_Hsa514 Homo_sapiens_Hsa516 Homo_sapiens_Hsa539 Mus_musculus_Mmu11946 Mus_musculus_Mmu11947 Mus_musculus_Mmu11949 Mus_musculus_Mmu11951 Mus_musculus_Mmu28080 Mus_musculus_Mmu66043 Mus_musculus_Mmu67126 Neospora_caninum_NCLIV003110 Neospora_caninum_NCLIV006060 Neospora_caninum_NCLIV014760 Neospora_caninum_NCLIV015180 Neospora_caninum_NCLIV020840 Neospora_caninum_NCLIV022950 Neospora_caninum_NCLIV023790 Neospora_caninum_NCLIV024070 Neospora_caninum_NCLIV024830 Neospora_caninum_NCLIV025670 Neospora_caninum_NCLIV026820 Neospora_caninum_NCLIV031670 Neospora_caninum_NCLIV031920 Neospora_caninum_NCLIV036300 Neospora_caninum_NCLIV037520 Neospora_caninum_NCLIV042390 Neospora_caninum_NCLIV046830 Neospora_caninum_NCLIV047080 Neospora_caninum_NCLIV051960 Neospora_caninum_NCLIV052510 Neospora_caninum_NCLIV054280 Neospora_caninum_NCLIV054440 Neospora_caninum_NCLIV057710 Neospora_caninum_NCLIV061440 Neospora_caninum_NCLIV062710 Neospora_caninum_NCLIV065310 Neospora_caninum_NCLIV065850 Perkinsus_marinus_XP002768044.1 Perkinsus_marinus_XP002768597.1 Perkinsus_marinus_XP002771100.1 Perkinsus_marinus_XP002771103.1 Perkinsus_marinus_XP002772062.1 Perkinsus_marinus_XP002772709.1 Perkinsus_marinus_XP002773712.1 Perkinsus_marinus_XP002775398.1 Perkinsus_marinus_XP002775812.1 Perkinsus_marinus_XP002776346.1 Perkinsus_marinus_XP002776776.1 Perkinsus_marinus_XP002778693.1 Perkinsus_marinus_XP002780357.1 Perkinsus_marinus_XP002781740.1 Perkinsus_marinus_XP002782393.1 Perkinsus_marinus_XP002782628.1 Perkinsus_marinus_XP002782804.1 Perkinsus_marinus_XP002783280.1 Perkinsus_marinus_XP002783408.1 Perkinsus_marinus_XP002783659.1 Perkinsus_marinus_XP002785293.1 Perkinsus_marinus_XP002785638.1 Perkinsus_marinus_XP002785641.1 Perkinsus_marinus_XP002788045.1 Plasmodium_berghei_PBANKA0109600 Plasmodium_berghei_PBANKA0206000 Plasmodium_berghei_PBANKA0313800 Plasmodium_berghei_PBANKA0405000 Plasmodium_berghei_PBANKA0409800 Plasmodium_berghei_PBANKA0508500 Plasmodium_berghei_PBANKA0616600 Plasmodium_berghei_PBANKA0705200 Plasmodium_berghei_PBANKA0715400 Plasmodium_berghei_PBANKA0803500 Plasmodium_berghei_PBANKA0835100 Plasmodium_berghei_PBANKA0901400 Plasmodium_berghei_PBANKA0906200 Plasmodium_berghei_PBANKA0907800 Plasmodium_berghei_PBANKA0923200 Plasmodium_berghei_PBANKA1024800 Plasmodium_berghei_PBANKA1119300 Plasmodium_berghei_PBANKA1136200 Plasmodium_berghei_PBANKA1401500 Plasmodium_berghei_PBANKA1408500 Plasmodium_berghei_PBANKA1409800 Plasmodium_berghei_PBANKA1421800 Plasmodium_berghei_PBANKA1450300 Plasmodium_chabaudi_PCHAS0110200 Plasmodium_chabaudi_PCHAS0204400 Plasmodium_chabaudi_PCHAS0315900 Plasmodium_chabaudi_PCHAS0405900 Plasmodium_chabaudi_PCHAS0410700 Plasmodium_chabaudi_PCHAS0508600 Plasmodium_chabaudi_PCHAS0618300 Plasmodium_chabaudi_PCHAS0702600 Plasmodium_chabaudi_PCHAS0707400 Plasmodium_chabaudi_PCHAS0709100 Plasmodium_chabaudi_PCHAS0714500 Plasmodium_chabaudi_PCHAS0724500 Plasmodium_chabaudi_PCHAS0803800 Plasmodium_chabaudi_PCHAS0835400 Plasmodium_chabaudi_PCHAS0921200 Plasmodium_chabaudi_PCHAS1025600 Plasmodium_chabaudi_PCHAS1118800 Plasmodium_chabaudi_PCHAS1135700 Plasmodium_chabaudi_PCHAS1403400 Plasmodium_chabaudi_PCHAS1410400 Plasmodium_chabaudi_PCHAS1411700 Plasmodium_chabaudi_PCHAS1423600 Plasmodium_chabaudi_PCHAS1452600 Plasmodium_falciparum_PF3D70107400 Plasmodium_falciparum_PF3D70217100 Plasmodium_falciparum_PF3D70306600 Plasmodium_falciparum_PF3D70311800 Plasmodium_falciparum_PF3D70611300 Plasmodium_falciparum_PF3D70620100 Plasmodium_falciparum_PF3D70705900 Plasmodium_falciparum_PF3D70715500 Plasmodium_falciparum_PF3D70719100 Plasmodium_falciparum_PF3D70815400 Plasmodium_falciparum_PF3D70825400 Plasmodium_falciparum_PF3D70934300 Plasmodium_falciparum_PF3D71024300 Plasmodium_falciparum_PF3D71125100 Plasmodium_falciparum_PF3D71141200 Plasmodium_falciparum_PF3D71142800 Plasmodium_falciparum_PF3D71147700 Plasmodium_falciparum_PF3D71235700 Plasmodium_falciparum_PF3D71303000 Plasmodium_falciparum_PF3D71310000 Plasmodium_falciparum_PF3D71311300 Plasmodium_falciparum_PF3D71360000 Plasmodium_falciparum_PF3D71417900 Plasmodium_knowlesi_PKNH0104400 Plasmodium_knowlesi_PKNH0206200 Plasmodium_knowlesi_PKNH0314500 Plasmodium_knowlesi_PKNH0403800 Plasmodium_knowlesi_PKNH0505000 Plasmodium_knowlesi_PKNH0608800 Plasmodium_knowlesi_PKNH0733000 Plasmodium_knowlesi_PKNH0830600 Plasmodium_knowlesi_PKNH0836100 Plasmodium_knowlesi_PKNH0923000 Plasmodium_knowlesi_PKNH0939000 Plasmodium_knowlesi_PKNH0940700 Plasmodium_knowlesi_PKNH0945600 Plasmodium_knowlesi_PKNH1111300 Plasmodium_knowlesi_PKNH1130200 Plasmodium_knowlesi_PKNH1139100 Plasmodium_knowlesi_PKNH1319400 Plasmodium_knowlesi_PKNH1340100 Plasmodium_knowlesi_PKNH1403200 Plasmodium_knowlesi_PKNH1410400 Plasmodium_knowlesi_PKNH1411700 Plasmodium_knowlesi_PKNH1424500 Plasmodium_knowlesi_PKNH1455400 Plasmodium_vivax_PVP010106100 Plasmodium_vivax_PVP010207500 Plasmodium_vivax_PVP010314800 Plasmodium_vivax_PVP010407900 Plasmodium_vivax_PVP010508900 Plasmodium_vivax_PVP010519900 Plasmodium_vivax_PVP010609500 Plasmodium_vivax_PVP010733000 Plasmodium_vivax_PVP010828400 Plasmodium_vivax_PVP010833600 Plasmodium_vivax_PVP010925800 Plasmodium_vivax_PVP010941900 Plasmodium_vivax_PVP010943500 Plasmodium_vivax_PVP010948300 Plasmodium_vivax_PVP011111900 Plasmodium_vivax_PVP011129400 Plasmodium_vivax_PVP011137900 Plasmodium_vivax_PVP011331000 Plasmodium_vivax_PVP011403900 Plasmodium_vivax_PVP011411000 Plasmodium_vivax_PVP011412300 Plasmodium_vivax_PVP011424600 Plasmodium_vivax_PVP011453800 Plasmodium_yoelii_PY17X0111200 Plasmodium_yoelii_PY17X0207400 Plasmodium_yoelii_PY17X0314300 Plasmodium_yoelii_PY17X0407200 Plasmodium_yoelii_PY17X0412300 Plasmodium_yoelii_PY17X0509600 Plasmodium_yoelii_PY17X0619300 Plasmodium_yoelii_PY17X0705500 Plasmodium_yoelii_PY17X0715600 Plasmodium_yoelii_PY17X0806200 Plasmodium_yoelii_PY17X0838500 Plasmodium_yoelii_PY17X0902800 Plasmodium_yoelii_PY17X0907600 Plasmodium_yoelii_PY17X0909200 Plasmodium_yoelii_PY17X0925200 Plasmodium_yoelii_PY17X1027200 Plasmodium_yoelii_PY17X1120400 Plasmodium_yoelii_PY17X1137700 Plasmodium_yoelii_PY17X1403100 Plasmodium_yoelii_PY17X1410300 Plasmodium_yoelii_PY17X1411600 Plasmodium_yoelii_PY17X1423800 Plasmodium_yoelii_PY17X1452800 Saccharomyces_cerevisiae_Q0130 Saccharomyces_cerevisiae_YBL099W Saccharomyces_cerevisiae_YBR039W Saccharomyces_cerevisiae_YDL004W Saccharomyces_cerevisiae_YDR298C Saccharomyces_cerevisiae_YJR121W Saccharomyces_cerevisiae_YPL271W Sarcocystis_neurona_SN300100160 Sarcocystis_neurona_SN300101465 Sarcocystis_neurona_SN300102510 Sarcocystis_neurona_SN300102655 Sarcocystis_neurona_SN300200025 Sarcocystis_neurona_SN300201975 Sarcocystis_neurona_SN300300305 Sarcocystis_neurona_SN300400090 Sarcocystis_neurona_SN300400785 Sarcocystis_neurona_SN300500200 Sarcocystis_neurona_SN300500490 Sarcocystis_neurona_SN300501135 Sarcocystis_neurona_SN300700620 Sarcocystis_neurona_SN300700765 Sarcocystis_neurona_SN300700860 Sarcocystis_neurona_SN300800530 Sarcocystis_neurona_SN301100865 Sarcocystis_neurona_SN301400600 Sarcocystis_neurona_SN301900755 Sarcocystis_neurona_SN302300385 Sarcocystis_neurona_SN302500060 Sarcocystis_neurona_SN302500555 Sarcocystis_neurona_SN303300060 Sarcocystis_neurona_SN303400175 Sarcocystis_neurona_SN303800130 Sarcocystis_neurona_SN303900105 Symbiodinum_minutum_symbB.v1.2.000251.t1 Symbiodinum_minutum_symbB.v1.2.000714.t1 Symbiodinum_minutum_symbB.v1.2.000849.t1 Symbiodinum_minutum_symbB.v1.2.001739.t1 Symbiodinum_minutum_symbB.v1.2.004028.t1 Symbiodinum_minutum_symbB.v1.2.004029.t1 Symbiodinum_minutum_symbB.v1.2.007516.t1 Symbiodinum_minutum_symbB.v1.2.007801.t1 Symbiodinum_minutum_symbB.v1.2.008811.t1 Symbiodinum_minutum_symbB.v1.2.009724.t1 Symbiodinum_minutum_symbB.v1.2.011430.t1 Symbiodinum_minutum_symbB.v1.2.011998.t1 Symbiodinum_minutum_symbB.v1.2.012108.t1 Symbiodinum_minutum_symbB.v1.2.012533.t1 Symbiodinum_minutum_symbB.v1.2.015683.t1 Symbiodinum_minutum_symbB.v1.2.019144.t1 Symbiodinum_minutum_symbB.v1.2.019162.t1 Symbiodinum_minutum_symbB.v1.2.020623.t1 Symbiodinum_minutum_symbB.v1.2.020826.t1 Symbiodinum_minutum_symbB.v1.2.025163.t1 Symbiodinum_minutum_symbB.v1.2.029645.t1 Symbiodinum_minutum_symbB.v1.2.030497.t1 Symbiodinum_minutum_symbB.v1.2.030498.t1 Symbiodinum_minutum_symbB.v1.2.031525.t1 Symbiodinum_minutum_symbB.v1.2.040919.t1 Tetrahymena_thermophilia_NP149381.1 Tetrahymena_thermophilia_XP001010761.1 Tetrahymena_thermophilia_XP001025180.2 Tetrahymena_thermophilia_XP001027692.2 Tetrahymena_thermophilia_XP001032631.2 Theileria_annulata_TA02515 Theileria_annulata_TA03095 Theileria_annulata_TA06450 Theileria_annulata_TA06630 Theileria_annulata_TA10680 Theileria_annulata_TA10780 Theileria_annulata_TA12155 Theileria_annulata_TA12215 Theileria_annulata_TA13195 Theileria_annulata_TA13675 Theileria_annulata_TA14760 Theileria_annulata_TA15215 Theileria_annulata_TA16245 Theileria_annulata_TA17940 Theileria_annulata_TA18110 Theileria_annulata_TA18150 Theileria_annulata_TA18615 Theileria_annulata_TA19140 Theileria_annulata_TA19395 Theileria_annulata_TA19720 Theileria_annulata_TA19930 Theileria_annulata_TA20945 Theileria_parva_TP010025 Theileria_parva_TP010071 Theileria_parva_TP010154 Theileria_parva_TP010201 Theileria_parva_TP010389 Theileria_parva_TP010623 Theileria_parva_TP010929 Theileria_parva_TP010962 Theileria_parva_TP010976 Theileria_parva_TP020253 Theileria_parva_TP020265 Theileria_parva_TP020442 Theileria_parva_TP020531 Theileria_parva_TP020722 Theileria_parva_TP020804 Theileria_parva_TP030055 Theileria_parva_TP030278 Theileria_parva_TP030569 Theileria_parva_TP030605 Theileria_parva_TP030761 Theileria_parva_TP030769 Theileria_parva_TP040635 Theileria_parva_TP040651 Toxoplasma_gondii_TGME49201800 Toxoplasma_gondii_TGME49204400 Toxoplasma_gondii_TGME49208440 Toxoplasma_gondii_TGME49214930 Toxoplasma_gondii_TGME49215610 Toxoplasma_gondii_TGME49218940 Toxoplasma_gondii_TGME49223040 Toxoplasma_gondii_TGME49225730 Toxoplasma_gondii_TGME49226000 Toxoplasma_gondii_TGME49231410 Toxoplasma_gondii_TGME49231910 Toxoplasma_gondii_TGME49245450 Toxoplasma_gondii_TGME49247410 Toxoplasma_gondii_TGME49249720 Toxoplasma_gondii_TGME49260180 Toxoplasma_gondii_TGME49261950 Toxoplasma_gondii_TGME49263080 Toxoplasma_gondii_TGME49263990 Toxoplasma_gondii_TGME49268830 Toxoplasma_gondii_TGME49270360 Toxoplasma_gondii_TGME49282180 Toxoplasma_gondii_TGME49284540 Toxoplasma_gondii_TGME49285510 Toxoplasma_gondii_TGME49290030 Toxoplasma_gondii_TGME49310180 Toxoplasma_gondii_TGME49310360 Toxoplasma_gondii_TGME49314820 Vitrella_brassicaformis_Vbra12983 Vitrella_brassicaformis_Vbra13736 Vitrella_brassicaformis_Vbra14129 Vitrella_brassicaformis_Vbra14590 Vitrella_brassicaformis_Vbra14980 Vitrella_brassicaformis_Vbra15179 Vitrella_brassicaformis_Vbra16069 Vitrella_brassicaformis_Vbra16763 Vitrella_brassicaformis_Vbra17642 Vitrella_brassicaformis_Vbra17670 Vitrella_brassicaformis_Vbra19525 Vitrella_brassicaformis_Vbra20034 Vitrella_brassicaformis_Vbra2058 Vitrella_brassicaformis_Vbra20673 Vitrella_brassicaformis_Vbra22582 Vitrella_brassicaformis_Vbra23050 Vitrella_brassicaformis_Vbra2766 Vitrella_brassicaformis_Vbra4019 Vitrella_brassicaformis_Vbra4892 Vitrella_brassicaformis_Vbra7465 Vitrella_brassicaformis_Vbra8263 Vitrella_brassicaformis_Vbra8465 Vitrella_brassicaformis_Vbra8656 Vitrella_brassicaformis_Vbra9857 ; END; BEGIN TREES; TITLE '12.ASAP-5.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49247410:0.01581,Hammondia_hammondi_HHA247410:0.01593):0.04121,Neospora_caninum_NCLIV065310:0.05492):0.13917,Sarcocystis_neurona_SN302500555:0.19729):0.04684,Vitrella_brassicaformis_Vbra16763:0.29934):0.02509,Chromera_velia_Cvel9927:0.33275):0.00593,((((Plasmodium_vivax_PVP010508900:0.03134,Plasmodium_knowlesi_PKNH1319400:0.02749):0.04797,((Plasmodium_berghei_PBANKA0705200:0.01146,Plasmodium_yoelii_PY17X0705500:0.01354):0.01874,Plasmodium_chabaudi_PCHAS0714500:0.03102):0.06412):0.02722,Plasmodium_falciparum_PF3D70825400:0.09994):0.18592,(((Theileria_annulata_TA18150:0.05786,Theileria_parva_TP030769:0.0698):0.12322,Babesia_bovis_BBOVIII000730:0.24684):0.06426,Cryptosporidium_muris_CMU029630:0.30245):0.02743):0.02135,(Symbiodinum_minutum_symbB.v1.2.001739.t1:0.2976,(Perkinsus_marinus_XP002781740.1:0.05191,Perkinsus_marinus_XP002768044.1:0.09809):0.25556):0.03675); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112235] END; BEGIN TREES; TITLE 4.F1epsilon.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49314820:0.0,Hammondia_hammondi_HHA314820:0.0):0.01366,Neospora_caninum_NCLIV057710:0.01374):0.13024,Sarcocystis_neurona_SN300300305:0.15743):0.05259,Eimeria_tenella_ETH00017010:0.24672):0.06706,((Chromera_velia_Cvel17380:0.22012,Perkinsus_marinus_XP002776346.1:0.26559):0.01495,(Vitrella_brassicaformis_Vbra20673:0.23057,Symbiodinum_minutum_symbB.v1.2.011998.t1:0.24888):0.02273):0.01379):0.02324,(((Plasmodium_vivax_PVP011424600:0.0239,Plasmodium_knowlesi_PKNH1424500:0.02021):0.0335,((Plasmodium_berghei_PBANKA1421800:0.0,Plasmodium_yoelii_PY17X1423800:0.0):0.00714,Plasmodium_chabaudi_PCHAS1423600:0.00714):0.05326):0.00958,Plasmodium_falciparum_PF3D70715500:0.0687):0.2068):0.0029,(((Theileria_parva_TP030278:0.17756,Babesia_bovis_BBOVIV007710:0.23316):0.10278,Cryptosporidium_muris_CMU002850:0.32936):0.02759,Arabidopsis_thaliana_AT5G47030:0.50294):0.01528,(((Homo_sapiens_Hsa514:0.03896,Mus_musculus_Mmu67126:0.05908):0.26311,Saccharomyces_cerevisiae_YPL271W:0.31882):0.05514,Chlamydomonas_reinhardtii_XP001702609.1:0.35062):0.01546); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112227] END; BEGIN TREES; TITLE '26.ASAP-19.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (Toxoplasma_gondii_TGME49263990:0.01445,(((Chromera_velia_Cvel14255:0.33856,Vitrella_brassicaformis_Vbra8656:0.30115):0.14387,Sarcocystis_neurona_SN300500490:0.20537):0.1745,Neospora_caninum_NCLIV024070:0.06499):0.04321,Hammondia_hammondi_HHA263990:0.02287); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112249] END; BEGIN TREES; TITLE '8.ASAP-1.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49310360:0.04196,Hammondia_hammondi_HHA310360:0.03839):0.0785,Neospora_caninum_NCLIV054440:0.17544):0.07932,Eimeria_tenella_ETH00000145:0.19273):0.04965,(((Plasmodium_vivax_PVP010314800:0.03358,Plasmodium_knowlesi_PKNH0314500:0.03987):0.09512,(Plasmodium_falciparum_PF3D70719100:0.11666,((Plasmodium_berghei_PBANKA0616600:0.0,Plasmodium_yoelii_PY17X0619300:0.0):0.0206,Plasmodium_chabaudi_PCHAS0618300:0.02459):0.10085):0.02635):0.08455,((Theileria_annulata_TA06630:0.03322,Theileria_parva_TP010962:0.04521):0.16567,Babesia_bovis_BBOVIV008130:0.17373):0.04424):0.03757):0.03426,Chromera_velia_Cvel5582:0.42688,Cryptosporidium_muris_CMU009020:0.34514); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112231] END; BEGIN TREES; TITLE '9.ASAP-2.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49231410:0.0087,Hammondia_hammondi_HHA231410:0.01057):0.03888,Neospora_caninum_NCLIV031670:0.05433):0.13035,Sarcocystis_neurona_SN301100865:0.18357):0.03639,Eimeria_tenella_ETH00007240:0.21763):0.03757,((Theileria_annulata_TA16245:0.04641,Theileria_parva_TP010976:0.04498):0.16591,Babesia_bovis_BBOVIII002980:0.20728):0.0831):0.01747,((Chromera_velia_Cvel13170:0.25406,Symbiodinum_minutum_symbB.v1.2.040919.t1:0.30887):0.03797,Vitrella_brassicaformis_Vbra22582:0.30946):0.04689):0.02228,(((Plasmodium_vivax_PVP010925800:0.09518,Plasmodium_knowlesi_PKNH0923000:0.0894):0.09179,(Plasmodium_falciparum_PF3D71125100:0.17679,((Plasmodium_berghei_PBANKA0923200:0.01997,Plasmodium_yoelii_PY17X0925200:0.0206):0.00686,Plasmodium_chabaudi_PCHAS0921200:0.03066):0.13406):0.02598):0.12801,Perkinsus_marinus_XP002782628.1:0.27083):0.00719,Cryptosporidium_muris_CMU011400:0.3939); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112232] END; BEGIN TREES; TITLE '16.ASAP-9.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49285510:0.01484,Hammondia_hammondi_HHA285510:0.01528):0.04465,Neospora_caninum_NCLIV014760:0.05138):0.1571,Sarcocystis_neurona_SN300100160:0.23592):0.05864,Eimeria_tenella_ETH00007500:0.26395):0.03583,(((Plasmodium_vivax_PVP011331000:0.03617,Plasmodium_knowlesi_PKNH1340100:0.03328):0.09939,(Plasmodium_falciparum_PF3D71417900:0.10814,((Plasmodium_berghei_PBANKA1024800:0.02677,Plasmodium_yoelii_PY17X1027200:0.02184):0.01285,Plasmodium_chabaudi_PCHAS1025600:0.03576):0.0863):0.01086):0.14205,((Theileria_annulata_TA13675:0.09209,Theileria_parva_TP020531:0.08912):0.14696,Babesia_bovis_BBOVII005910:0.26581):0.05201):0.02219):0.01461,Cryptosporidium_muris_CMU022710:0.3628):0.01334,(Chromera_velia_Cvel21091:0.33114,Perkinsus_marinus_XP002783659.1:0.32812):0.02452,Vitrella_brassicaformis_Vbra19525:0.30535); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112239] END; BEGIN TREES; TITLE '11.ASAP-4.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49223040:0.01244,Hammondia_hammondi_HHA223040:0.00848):0.0209,Neospora_caninum_NCLIV006060:0.0335):0.09559,Sarcocystis_neurona_SN300700765:0.15862):0.053,Eimeria_tenella_ETH00038660:0.11501):0.02575,((Theileria_annulata_TA17940:0.08315,Theileria_parva_TP030605:0.10178):0.17702,Babesia_bovis_BBOVIII001940:0.22316):0.0322):0.02346,(((Plasmodium_vivax_PVP010943500:0.06243,Plasmodium_knowlesi_PKNH0940700:0.06757):0.04592,((Plasmodium_berghei_PBANKA0906200:0.02029,Plasmodium_yoelii_PY17X0907600:0.01608):0.01519,Plasmodium_chabaudi_PCHAS0707400:0.03209):0.07989):0.03755,Plasmodium_falciparum_PF3D71142800:0.1655):0.15135):0.03931,((Chromera_velia_Cvel1249:0.29584,Vitrella_brassicaformis_Vbra17670:0.29066):0.031,(Symbiodinum_minutum_symbB.v1.2.012108.t1:0.27441,((Perkinsus_marinus_XP002785638.1:0.07243,Perkinsus_marinus_XP002771103.1:0.05992):0.0638,Perkinsus_marinus_XP002771100.1:0.09595):0.17922):0.02275):0.01504,Cryptosporidium_muris_CMU038530:0.38365); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112234] END; BEGIN TREES; TITLE '22.ASAP-15.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49208440:0.02149,Hammondia_hammondi_HHA208440:0.02241):0.07314,Neospora_caninum_NCLIV003110:0.10021):0.13689,Sarcocystis_neurona_SN300800530:0.25097):0.061,Eimeria_tenella_ETH00004265:0.33177):0.02121,((((Plasmodium_vivax_PVP010733000:0.11735,Plasmodium_knowlesi_PKNH0733000:0.10625):0.08156,((Plasmodium_berghei_PBANKA0835100:0.02314,Plasmodium_yoelii_PY17X0838500:0.02034):0.02558,Plasmodium_chabaudi_PCHAS0835400:0.04326):0.12367):0.02985,Plasmodium_falciparum_PF3D70934300:0.17988):0.14074,((Theileria_annulata_TA19140:0.01237,Theileria_parva_TP010154:0.12432):0.16664,Babesia_bovis_BBOVIV001290:0.16275):0.17397):0.02282,Cryptosporidium_muris_CMU009570:0.36883); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112245] END; BEGIN TREES; TITLE '24.ASAP-17.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49225730:0.00854,Hammondia_hammondi_HHA225730:0.00709):0.05338,Neospora_caninum_NCLIV047080:0.07162):0.10678,Sarcocystis_neurona_SN300102510:0.20182):0.05159,Symbiodinum_minutum_symbB.v1.2.007801.t1:0.27281):0.01583,((Chromera_velia_Cvel17276:0.30868,Perkinsus_marinus_XP002788045.1:0.34688):0.02106,Vitrella_brassicaformis_Vbra16069:0.27808):0.02972,((Plasmodium_vivax_PVP011403900:0.02839,Plasmodium_knowlesi_PKNH1403200:0.03144):0.08858,(Plasmodium_falciparum_PF3D71303000:0.14237,(Plasmodium_berghei_PBANKA1401500:0.01095,(Plasmodium_yoelii_PY17X1403100:0.00608,Plasmodium_chabaudi_PCHAS1403400:0.01101):0.00615):0.09481):0.01933):0.15084); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112247] END; BEGIN TREES; TITLE 5.F1gamma.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((((Toxoplasma_gondii_TGME49231910:0.01248,Hammondia_hammondi_HHA231910:0.01618):0.0194,Neospora_caninum_NCLIV031920:0.03474):0.07541,Sarcocystis_neurona_SN300700860:0.11488):0.08608,Eimeria_tenella_ETH00017240:0.31197):0.02508,((Chromera_velia_Cvel10158:0.1917,Vitrella_brassicaformis_Vbra15179:0.18578):0.02655,Perkinsus_marinus_XP002778693.1:0.23444):0.01052):0.01966,((((Plasmodium_vivax_PVP011412300:0.01997,Plasmodium_knowlesi_PKNH1411700:0.01528):0.06328,((Plasmodium_berghei_PBANKA1409800:0.01106,Plasmodium_yoelii_PY17X1411600:0.01109):0.00697,Plasmodium_chabaudi_PCHAS1411700:0.01518):0.07515):0.01585,Plasmodium_falciparum_PF3D71311300:0.10615):0.15858,((Theileria_annulata_TA19395:0.01697,Theileria_parva_TP010201:0.01488):0.14039,Babesia_bovis_BBOVIV005350:0.16008):0.07956):0.02028):0.02213,Tetrahymena_thermophilia_XP001010761.1:0.31731):0.01297,(Cryptosporidium_muris_CMU017340:0.33918,((Arabidopsis_thaliana_AT2G33040:0.26587,Chlamydomonas_reinhardtii_XP001700627.1:0.26298):0.03721,((Homo_sapiens_Hsa509:0.04548,Mus_musculus_Mmu11949:0.04176):0.22201,Saccharomyces_cerevisiae_YBR039W:0.32169):0.04397):0.01354):0.00573,(Symbiodinum_minutum_symbB.v1.2.004028.t1:0.00405,Symbiodinum_minutum_symbB.v1.2.004029.t1:0.00546):0.39409); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112228] END; BEGIN TREES; TITLE '15.ASAP-8.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49282180:0.0174,Hammondia_hammondi_HHA282180:0.00846):0.03086,Neospora_caninum_NCLIV023790:0.06296):0.12018,Sarcocystis_neurona_SN300400090:0.20967):0.06111,Eimeria_tenella_ETH00041215:0.23254):0.05581,(((Chromera_velia_Cvel23801:0.34462,(Vitrella_brassicaformis_Vbra13736:0.28452,Perkinsus_marinus_XP002785293.1:0.33267):0.01263):0.02646,Cryptosporidium_muris_CMU008320:0.30883):0.04195,(((Plasmodium_vivax_PVP011137900:0.01519,Plasmodium_knowlesi_PKNH1139100:0.01696):0.04753,((Plasmodium_berghei_PBANKA0109600:0.00577,Plasmodium_yoelii_PY17X0111200:0.00495):0.00745,Plasmodium_chabaudi_PCHAS0110200:0.01041):0.05694):0.00172,Plasmodium_falciparum_PF3D70611300:0.06479):0.21709):0.00843,((Theileria_annulata_TA18110:0.06974,Theileria_parva_TP030761:0.07312):0.08789,Babesia_bovis_BBOVIII000600:0.15647):0.08985); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112238] END; BEGIN TREES; TITLE '21.ASAP-14.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49245450:0.0054,Hammondia_hammondi_HHA245450:0.00953):0.01751,Neospora_caninum_NCLIV062710:0.02727):0.12808,Sarcocystis_neurona_SN300400785:0.12752):0.08247,(Eimeria_tenella_ETH00006505:0.34527,(((Plasmodium_vivax_PVP011129400:0.02907,Plasmodium_knowlesi_PKNH1130200:0.04124):0.09683,(Plasmodium_falciparum_PF3D70620100:0.1018,(Plasmodium_berghei_PBANKA1119300:0.01967,(Plasmodium_yoelii_PY17X1120400:0.0189,Plasmodium_chabaudi_PCHAS1118800:0.02017):0.00376):0.09156):0.01548):0.18092,((Theileria_annulata_TA14760:0.02824,Theileria_parva_TP020722:0.02479):0.16107,Babesia_bovis_BBOVI004130:0.18064):0.14461):0.01914):0.02221):0.02795,Vitrella_brassicaformis_Vbra7465:0.26282):0.00688,Chromera_velia_Cvel18921:0.20957,(Symbiodinum_minutum_symbB.v1.2.015683.t1:0.18321,Perkinsus_marinus_XP002772062.1:0.24198):0.0559); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112244] END; BEGIN TREES; TITLE '18.ASAP-11.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((((Toxoplasma_gondii_TGME49290030:0.02278,Hammondia_hammondi_HHA290030:0.02089):0.02964,Neospora_caninum_NCLIV042390:0.05914):0.08158,Sarcocystis_neurona_SN300101465:0.14026):0.03973,((Chromera_velia_Cvel17739:0.28935,(Vitrella_brassicaformis_Vbra9857:0.32245,Perkinsus_marinus_XP002773712.1:0.31032):0.00611):0.09646,((Theileria_annulata_TA12215:0.01005,Theileria_parva_TP020265:0.00749):0.08501,Babesia_bovis_BBOVII004850:0.13429):0.06692):0.01366):0.14063,Plasmodium_falciparum_PF3D71360000:0.05656):0.00769,(Plasmodium_vivax_PVP011111900:0.0063,Plasmodium_knowlesi_PKNH1111300:0.0163):0.02538):0.01915,Plasmodium_berghei_PBANKA1136200:0.00367):0.00198,Plasmodium_yoelii_PY17X1137700:0.0,Plasmodium_chabaudi_PCHAS1135700:0.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112241] END; BEGIN TREES; TITLE 7.OSCP.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((((Toxoplasma_gondii_TGME49284540:0.02262,Hammondia_hammondi_HHA284540:0.02103):0.04343,Neospora_caninum_NCLIV015180:0.06527):0.1501,Sarcocystis_neurona_SN301900755:0.23173):0.04818,(Chromera_velia_Cvel20402:0.27359,(Vitrella_brassicaformis_Vbra17642:0.22505,Symbiodinum_minutum_symbB.v1.2.012533.t1:0.25163):0.02126):0.00891):0.03162,Perkinsus_marinus_XP002783408.1:0.31803):0.01894,Eimeria_tenella_ETH00007515:0.37382):0.01471,((Theileria_annulata_TA06450:0.11179,Theileria_parva_TP010929:0.10794):0.19491,Babesia_bovis_BBOVIV008470:0.29058):0.06088):0.012,((((Arabidopsis_thaliana_AT5G13450:0.34637,(Homo_sapiens_Hsa539:0.09111,Mus_musculus_Mmu28080:0.08729):0.22009):0.00509,Saccharomyces_cerevisiae_YDR298C:0.33505):0.00342,Chlamydomonas_reinhardtii_XP001695985.1:0.38009):0.029,(Symbiodinum_minutum_symbB.v1.2.020826.t1:0.18784,((Symbiodinum_minutum_symbB.v1.2.030497.t1:7.5E-4,Symbiodinum_minutum_symbB.v1.2.030498.t1:-7.5E-4):0.15785,Symbiodinum_minutum_symbB.v1.2.007516.t1:0.14952):0.03612):0.21731):0.01423):0.00909,((((Plasmodium_vivax_PVP011411000:0.05056,Plasmodium_knowlesi_PKNH1410400:0.0519):0.12018,((Plasmodium_berghei_PBANKA1408500:0.01409,Plasmodium_yoelii_PY17X1410300:0.01325):0.01174,Plasmodium_chabaudi_PCHAS1410400:0.02732):0.1539):0.02234,Plasmodium_falciparum_PF3D71310000:0.21434):0.1659,Cryptosporidium_muris_CMU025000:0.38693):0.01693,Tetrahymena_thermophilia_XP001025180.2:0.35661); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112230] END; BEGIN TREES; TITLE 6.F0c.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49249720:0.003,Hammondia_hammondi_HHA249720:0.00303):0.05966,Neospora_caninum_NCLIV065850:0.06383):0.0436,Sarcocystis_neurona_SN303800130:0.13461):0.07005,Eimeria_tenella_ETH00023385:0.18035):0.02593,((Theileria_annulata_TA15215:0.04479,Theileria_parva_TP020804:0.0411):0.15101,Babesia_bovis_BBOVIII004620:0.19387):0.01956):0.00253,(((Chromera_velia_Cvel13917:0.10005,Chromera_velia_Cvel17295:0.10117):0.09122,Vitrella_brassicaformis_Vbra14129:0.15027):0.03582,((Tetrahymena_thermophilia_NP149381.1:0.36338,(((Arabidopsis_thaliana_AT2G07671:0.20393,Chlamydomonas_reinhardtii_XP001701531.1:0.2652):0.02119,((Homo_sapiens_Hsa516:0.05223,Mus_musculus_Mmu11951:0.05071):0.1557,Saccharomyces_cerevisiae_Q0130:0.1744):0.04348):0.10433,(Symbiodinum_minutum_symbB.v1.2.011430.t1:0.07274,Symbiodinum_minutum_symbB.v1.2.000251.t1:0.07114):0.30378):0.03117):0.05874,((Symbiodinum_minutum_symbB.v1.2.019162.t1:0.11462,Symbiodinum_minutum_symbB.v1.2.000714.t1:0.06038):0.10329,(Perkinsus_marinus_XP002782804.1:0.0012,Perkinsus_marinus_XP002772709.1:0.10664):0.09331):0.06687):0.02849):0.01506,((((Plasmodium_vivax_PVP010106100:0.02597,Plasmodium_knowlesi_PKNH0104400:0.02857):0.07513,Plasmodium_falciparum_PF3D70705900:0.0976):0.02421,((Plasmodium_berghei_PBANKA0803500:0.0097,Plasmodium_yoelii_PY17X0806200:0.00848):0.02163,Plasmodium_chabaudi_PCHAS0803800:0.02988):0.0932):0.08876,Cryptosporidium_muris_CMU016520:0.27623):0.04385); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112229] END; BEGIN TREES; TITLE '10.ASAP-3.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49268830:0.01032,Hammondia_hammondi_HHA268830:0.0158):0.04461,Neospora_caninum_NCLIV037520:0.0608):0.13995,Sarcocystis_neurona_SN300500200:0.23085):0.06109,Eimeria_tenella_ETH00032380:0.32148):0.01117,((Chromera_velia_Cvel16485:0.27906,Vitrella_brassicaformis_Vbra23050:0.27023):0.00806,(Symbiodinum_minutum_symbB.v1.2.008811.t1:0.26427,(Perkinsus_marinus_XP002775812.1:0.04389,Perkinsus_marinus_XP002775398.1:0.03804):0.2316):0.0398):0.02473,((Eimeria_tenella_ETH00017665:0.34405,((Theileria_annulata_TA02515:0.06416,Theileria_parva_TP030055:0.0651):0.20642,Babesia_bovis_BBOVIII003520:0.2583):0.05969):0.01904,((((Plasmodium_vivax_PVP010828400:0.04734,Plasmodium_knowlesi_PKNH0830600:0.05023):0.10907,(Plasmodium_berghei_PBANKA0409800:0.03392,(Plasmodium_yoelii_PY17X0412300:0.02923,Plasmodium_chabaudi_PCHAS0410700:0.03021):0.00542):0.12231):0.03129,Plasmodium_falciparum_PF3D70311800:0.20189):0.13938,Cryptosporidium_muris_CMU026200:0.38553):0.01813):0.00577); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112233] END; BEGIN TREES; TITLE '20.ASAP-13.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49214930:0.01297,Hammondia_hammondi_HHA214930:0.01602):0.01451,Neospora_caninum_NCLIV051960:0.02614):0.14954,Sarcocystis_neurona_SN303900105:0.23739):0.06502,(((Plasmodium_vivax_PVP010609500:0.05424,Plasmodium_knowlesi_PKNH0608800:0.05066):0.0439,(Plasmodium_falciparum_PF3D71024300:0.07864,((Plasmodium_berghei_PBANKA0508500:0.0,Plasmodium_yoelii_PY17X0509600:0.0):0.01916,Plasmodium_chabaudi_PCHAS0508600:0.01901):0.05853):0.04477):0.20172,((Theileria_annulata_TA03095:0.03725,Theileria_parva_TP010623:0.04118):0.23953,Babesia_bovis_BBOVIV003000:0.28176):0.09343):0.07789):0.02255,Symbiodinum_minutum_symbB.v1.2.025163.t1:0.25785):0.01826,Chromera_velia_Cvel2187:0.17813,Vitrella_brassicaformis_Vbra2766:0.20587); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112243] END; BEGIN TREES; TITLE '27.ASAP-20.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((Toxoplasma_gondii_TGME49270360:0.01834,Hammondia_hammondi_HHA270360:0.02482):0.07383,((Chromera_velia_Cvel21389:0.28012,Vitrella_brassicaformis_Vbra20034:0.29131):0.16543,Sarcocystis_neurona_SN302500060:0.19065):0.13602,Neospora_caninum_NCLIV036300:0.07005); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112250] END; BEGIN TREES; TITLE 3.F1delta.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((((Toxoplasma_gondii_TGME49226000:0.0,Hammondia_hammondi_HHA226000:0.0):0.03387,Neospora_caninum_NCLIV046830:0.03796):0.12295,Sarcocystis_neurona_SN300102655:0.16434):0.091,((Chromera_velia_Cvel21479:0.18,Vitrella_brassicaformis_Vbra4892:0.17294):0.02349,(Symbiodinum_minutum_symbB.v1.2.019144.t1:0.16578,Perkinsus_marinus_XP002785641.1:0.18261):0.03271):0.04158):0.04969,((((Plasmodium_vivax_PVP010948300:0.01473,Plasmodium_knowlesi_PKNH0945600:0.01124):0.0302,Plasmodium_falciparum_PF3D71147700:0.04772):0.018,((Plasmodium_berghei_PBANKA0901400:0.0087,Plasmodium_yoelii_PY17X0902800:0.00429):0.00236,Plasmodium_chabaudi_PCHAS0702600:0.00413):0.06317):0.2516,Cryptosporidium_muris_CMU008960:0.32):0.01573):0.0143,((Theileria_annulata_TA12155:0.02252,Theileria_parva_TP020253:0.02293):0.21224,Babesia_bovis_BBOVIII004400:0.24869):0.06299):0.06228,Symbiodinum_minutum_symbB.v1.2.029645.t1:0.37671):0.03625,((Arabidopsis_thaliana_AT5G47030:0.30276,(Homo_sapiens_Hsa513:0.06506,Mus_musculus_Mmu66043:0.07184):0.26255):0.00994,Chlamydomonas_reinhardtii_XP001698736.1:0.31724):0.0,Saccharomyces_cerevisiae_YDL004W:0.32134); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112226] END; BEGIN TREES; TITLE 1.F1alpha.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49204400:0.01877,Hammondia_hammondi_HHA204400:0.0291):0.00644,Neospora_caninum_NCLIV020840:0.02633):0.04013,Sarcocystis_neurona_SN302300385:0.07987):0.04205,Eimeria_tenella_ETH00005270:0.13968):0.02185,((Chromera_velia_Cvel9763:0.10831,Vitrella_brassicaformis_Vbra12983:0.09927):0.02799,((Symbiodinum_minutum_symbB.v1.2.020623.t1:0.0157,Symbiodinum_minutum_symbB.v1.2.031525.t1:0.01733):0.09539,Perkinsus_marinus_XP002780357.1:0.11979):0.02757):0.01211):0.00661,(((((Plasmodium_vivax_PVP010407900:0.03657,Plasmodium_knowlesi_PKNH0403800:0.03227):0.03023,(Plasmodium_falciparum_PF3D70217100:0.05869,((Plasmodium_berghei_PBANKA0313800:0.00932,Plasmodium_yoelii_PY17X0314300:0.0071):0.00702,Plasmodium_chabaudi_PCHAS0315900:0.01305):0.03491):0.00914):0.1387,(Cryptosporidium_parvum_Cgd6610:0.01682,Cryptosporidium_hominis_Chro.60082:0.0233):0.28141):0.01249,Cryptosporidium_muris_CMU027630:0.1605):0.03012,((Theileria_annulata_TA18615:0.0211,Theileria_parva_TP030569:0.02477):0.09067,Babesia_bovis_BBOVIII002130:0.10654):0.04058):0.00651,(((Tetrahymena_thermophilia_XP001027692.2:0.164,(Homo_sapiens_Hsa498:0.01317,Mus_musculus_Mmu11946:0.01214):0.11282):0.01134,Saccharomyces_cerevisiae_YBL099W:0.16657):0.00665,(Arabidopsis_thaliana_AT2G07698:0.18979,Chlamydomonas_reinhardtii_XP001699641.1:0.20237):0.01392):0.00922); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112224] END; BEGIN TREES; TITLE 2.F1beta.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49261950:0.00162,Hammondia_hammondi_HHA261950:0.00195):0.02153,Neospora_caninum_NCLIV025670:0.02568):0.04788,Sarcocystis_neurona_SN300201975:0.08445):0.03057,Eimeria_tenella_ETH00026155:0.16389):0.01508,((Chromera_velia_Cvel18898:0.06157,Vitrella_brassicaformis_Vbra14590:0.09152):0.01168,Perkinsus_marinus_XP002782393.1:0.12263):0.00246,((((((Plasmodium_vivax_PVP011453800:0.03152,Plasmodium_knowlesi_PKNH1455400:0.03612):0.02809,Plasmodium_falciparum_PF3D71235700:0.05993):0.00237,((Plasmodium_berghei_PBANKA1450300:0.0132,Plasmodium_yoelii_PY17X1452800:0.01119):0.0055,Plasmodium_chabaudi_PCHAS1452600:0.0142):0.04589):0.05387,((Theileria_annulata_TA20945:0.03762,Theileria_parva_TP010389:0.03785):0.07633,Babesia_bovis_BBOVIV005830:0.07563):0.04163):0.00786,(Cryptosporidium_muris_CMU008950:0.13503,(Cryptosporidium_parvum_Cgd21360:0.01426,Cryptosporidium_hominis_Chro.20148:4.0E-4):0.24177):0.01912):0.01293,(Tetrahymena_thermophilia_XP001032631.2:0.13485,((Arabidopsis_thaliana_AT5G08670:0.13303,Chlamydomonas_reinhardtii_XP001691632.1:0.09097):0.01762,((Homo_sapiens_Hsa506:0.02059,Mus_musculus_Mmu11947:0.01722):0.09384,Saccharomyces_cerevisiae_YJR121W:0.12766):0.00408):0.01002):0.00678):0.00354); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112225] END; BEGIN TREES; TITLE '25.ASAP-18.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49263080:0.01112,Hammondia_hammondi_HHA263080:0.01144):0.04946,Neospora_caninum_NCLIV024830:0.07836):0.14862,Sarcocystis_neurona_SN303300060:0.23023):0.06398,Eimeria_tenella_ETH00034330:0.29252):0.04842,Cryptosporidium_muris_CMU001170:0.42102):0.03188,(Chromera_velia_Cvel28758:0.16324,Vitrella_brassicaformis_Vbra2058:0.17009):0.06065,(Symbiodinum_minutum_symbB.v1.2.009724.t1:0.22462,Perkinsus_marinus_XP002768597.1:0.29186):0.02027); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112248] END; BEGIN TREES; TITLE '13.ASAP-6.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49260180:0.00997,Hammondia_hammondi_HHA260180:0.01551):0.03997,Neospora_caninum_NCLIV026820:0.05557):0.08578,Sarcocystis_neurona_SN303400175:0.16166):0.07884,((Plasmodium_vivax_PVP010207500:0.10205,Plasmodium_knowlesi_PKNH0206200:0.09004):0.05409,(Plasmodium_falciparum_PF3D70107400:0.11203,(Plasmodium_berghei_PBANKA0206000:0.03971,(Plasmodium_yoelii_PY17X0207400:0.02496,Plasmodium_chabaudi_PCHAS0204400:0.03421):0.00467):0.08454):0.03354):0.12147):0.00293,((Chromera_velia_Cvel33208:0.29621,(Vitrella_brassicaformis_Vbra8465:0.29162,(Cryptosporidium_muris_CMU028470:0.37334,Perkinsus_marinus_XP002776776.1:0.27734):0.02116):0.00786):0.01761,Eimeria_tenella_ETH00017205:0.26071):0.0071,((Theileria_annulata_TA10780:0.04567,Theileria_parva_TP040635:0.05237):0.15801,Babesia_bovis_BBOVIII007280:0.19863):0.05968); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112236] END; BEGIN TREES; TITLE '17.ASAP-10.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49215610:0.01664,Hammondia_hammondi_HHA215610:0.0194):0.01971,Neospora_caninum_NCLIV052510:0.02534):0.07796,Sarcocystis_neurona_SN301400600:0.13375):0.01236,Eimeria_tenella_ETH00015200:0.11039):0.07049,(Chromera_velia_Cvel9679:0.40071,Cryptosporidium_muris_CMU006100:0.33196):0.1177):0.01814,((Theileria_annulata_TA10680:0.0232,Theileria_parva_TP040651:0.02185):0.09015,(Babesia_bovis_BBOVIII007460:0.0,Babesia_bovis_BBOVIII007490:0.0):0.09903):0.06157):0.12654,((Plasmodium_vivax_PVP010941900:0.02697,Plasmodium_knowlesi_PKNH0939000:0.01807):0.02827,Plasmodium_falciparum_PF3D71141200:0.06182):0.01272,(Plasmodium_berghei_PBANKA0907800:0.02196,(Plasmodium_yoelii_PY17X0909200:0.00845,Plasmodium_chabaudi_PCHAS0709100:0.00957):0.01408):0.04303); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112240] END; BEGIN TREES; TITLE '23.ASAP-16.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49201800:0.02537,Hammondia_hammondi_HHA201800:0.02332):0.06546,Neospora_caninum_NCLIV022950:0.09201):0.15844,Sarcocystis_neurona_SN300700620:0.27117):0.03339,Eimeria_tenella_ETH00015495:0.28379):0.03575,((Theileria_annulata_TA13195:0.08297,Theileria_parva_TP020442:0.09183):0.20861,Babesia_bovis_BBOVIII005120:0.28588):0.12197):0.03416,Chromera_velia_Cvel5893:0.33254,Vitrella_brassicaformis_Vbra14980:0.3199); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112246] END; BEGIN TREES; TITLE '19.ASAP-12.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49310180:0.02758,Hammondia_hammondi_HHA310180:0.03764):0.04862,Neospora_caninum_NCLIV054280:0.04528):0.10845,Sarcocystis_neurona_SN300501135:0.15756):0.05291,(Chromera_velia_Cvel5942:0.35047,Vitrella_brassicaformis_Vbra8263:0.36381):0.06861):0.01402,(Theileria_annulata_TA19930:0.12939,Theileria_parva_TP010071:0.10138):0.14638):0.1423,((Plasmodium_berghei_PBANKA0405000:0.00441,Plasmodium_yoelii_PY17X0407200:0.00735):0.03052,Plasmodium_chabaudi_PCHAS0405900:0.01654):0.07275):0.01549,(Plasmodium_vivax_PVP010833600:0.04868,Plasmodium_knowlesi_PKNH0836100:0.03367):0.05514,Plasmodium_falciparum_PF3D70306600:0.0978); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112242] END; BEGIN TREES; TITLE '14.ASAP-7.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49218940:0.02006,Hammondia_hammondi_HHA218940:0.01954):0.06302,Neospora_caninum_NCLIV061440:0.08218):0.12151,Sarcocystis_neurona_SN300200025:0.20832):0.06479,Eimeria_tenella_ETH00008250:0.28362):0.03396,((Chromera_velia_Cvel4217:0.29469,Vitrella_brassicaformis_Vbra4019:0.36049):0.01867,(Symbiodinum_minutum_symbB.v1.2.000849.t1:0.20953,Perkinsus_marinus_XP002783280.1:0.20787):0.09099):0.04504,((((Plasmodium_vivax_PVP010519900:0.06407,Plasmodium_knowlesi_PKNH0505000:0.05938):0.07075,(Plasmodium_falciparum_PF3D70815400:0.12529,((Plasmodium_berghei_PBANKA0715400:0.02568,Plasmodium_yoelii_PY17X0715600:0.02401):0.00999,Plasmodium_chabaudi_PCHAS0724500:0.03038):0.08424):0.01056):0.16615,((Theileria_annulata_TA19720:0.06698,Theileria_parva_TP010025:0.21377):0.16009,Babesia_bovis_BBOVI002640:0.215):0.02153):0.02415,Cryptosporidium_muris_CMU018280:0.30674):0.01444); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112237] END; [ The following blocks are output data for analysis step 23074 ] BEGIN TREES; TITLE '11.ASAP-4.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49223040:0.01244,Hammondia_hammondi_HHA223040:0.00848):0.0209,Neospora_caninum_NCLIV006060:0.0335):0.09559,Sarcocystis_neurona_SN300700765:0.15862):0.053,Eimeria_tenella_ETH00038660:0.11501):0.02575,((Theileria_annulata_TA17940:0.08315,Theileria_parva_TP030605:0.10178):0.17702,Babesia_bovis_BBOVIII001940:0.22316):0.0322):0.02346,(((Plasmodium_vivax_PVP010943500:0.06243,Plasmodium_knowlesi_PKNH0940700:0.06757):0.04592,((Plasmodium_berghei_PBANKA0906200:0.02029,Plasmodium_yoelii_PY17X0907600:0.01608):0.01519,Plasmodium_chabaudi_PCHAS0707400:0.03209):0.07989):0.03755,Plasmodium_falciparum_PF3D71142800:0.1655):0.15135):0.03931,((Chromera_velia_Cvel1249:0.29584,Vitrella_brassicaformis_Vbra17670:0.29066):0.031,(Symbiodinum_minutum_symbB.v1.2.012108.t1:0.27441,((Perkinsus_marinus_XP002785638.1:0.07243,Perkinsus_marinus_XP002771103.1:0.05992):0.0638,Perkinsus_marinus_XP002771100.1:0.09595):0.17922):0.02275):0.01504,Cryptosporidium_muris_CMU038530:0.38365); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112234] END; BEGIN TREES; TITLE '20.ASAP-13.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49214930:0.01297,Hammondia_hammondi_HHA214930:0.01602):0.01451,Neospora_caninum_NCLIV051960:0.02614):0.14954,Sarcocystis_neurona_SN303900105:0.23739):0.06502,(((Plasmodium_vivax_PVP010609500:0.05424,Plasmodium_knowlesi_PKNH0608800:0.05066):0.0439,(Plasmodium_falciparum_PF3D71024300:0.07864,((Plasmodium_berghei_PBANKA0508500:0.0,Plasmodium_yoelii_PY17X0509600:0.0):0.01916,Plasmodium_chabaudi_PCHAS0508600:0.01901):0.05853):0.04477):0.20172,((Theileria_annulata_TA03095:0.03725,Theileria_parva_TP010623:0.04118):0.23953,Babesia_bovis_BBOVIV003000:0.28176):0.09343):0.07789):0.02255,Symbiodinum_minutum_symbB.v1.2.025163.t1:0.25785):0.01826,Chromera_velia_Cvel2187:0.17813,Vitrella_brassicaformis_Vbra2766:0.20587); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112243] END; BEGIN TREES; TITLE 4.F1epsilon.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49314820:0.0,Hammondia_hammondi_HHA314820:0.0):0.01366,Neospora_caninum_NCLIV057710:0.01374):0.13024,Sarcocystis_neurona_SN300300305:0.15743):0.05259,Eimeria_tenella_ETH00017010:0.24672):0.06706,((Chromera_velia_Cvel17380:0.22012,Perkinsus_marinus_XP002776346.1:0.26559):0.01495,(Vitrella_brassicaformis_Vbra20673:0.23057,Symbiodinum_minutum_symbB.v1.2.011998.t1:0.24888):0.02273):0.01379):0.02324,(((Plasmodium_vivax_PVP011424600:0.0239,Plasmodium_knowlesi_PKNH1424500:0.02021):0.0335,((Plasmodium_berghei_PBANKA1421800:0.0,Plasmodium_yoelii_PY17X1423800:0.0):0.00714,Plasmodium_chabaudi_PCHAS1423600:0.00714):0.05326):0.00958,Plasmodium_falciparum_PF3D70715500:0.0687):0.2068):0.0029,(((Theileria_parva_TP030278:0.17756,Babesia_bovis_BBOVIV007710:0.23316):0.10278,Cryptosporidium_muris_CMU002850:0.32936):0.02759,Arabidopsis_thaliana_AT5G47030:0.50294):0.01528,(((Homo_sapiens_Hsa514:0.03896,Mus_musculus_Mmu67126:0.05908):0.26311,Saccharomyces_cerevisiae_YPL271W:0.31882):0.05514,Chlamydomonas_reinhardtii_XP001702609.1:0.35062):0.01546); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112227] END; BEGIN TREES; TITLE 2.F1beta.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49261950:0.00162,Hammondia_hammondi_HHA261950:0.00195):0.02153,Neospora_caninum_NCLIV025670:0.02568):0.04788,Sarcocystis_neurona_SN300201975:0.08445):0.03057,Eimeria_tenella_ETH00026155:0.16389):0.01508,((Chromera_velia_Cvel18898:0.06157,Vitrella_brassicaformis_Vbra14590:0.09152):0.01168,Perkinsus_marinus_XP002782393.1:0.12263):0.00246,((((((Plasmodium_vivax_PVP011453800:0.03152,Plasmodium_knowlesi_PKNH1455400:0.03612):0.02809,Plasmodium_falciparum_PF3D71235700:0.05993):0.00237,((Plasmodium_berghei_PBANKA1450300:0.0132,Plasmodium_yoelii_PY17X1452800:0.01119):0.0055,Plasmodium_chabaudi_PCHAS1452600:0.0142):0.04589):0.05387,((Theileria_annulata_TA20945:0.03762,Theileria_parva_TP010389:0.03785):0.07633,Babesia_bovis_BBOVIV005830:0.07563):0.04163):0.00786,(Cryptosporidium_muris_CMU008950:0.13503,(Cryptosporidium_parvum_Cgd21360:0.01426,Cryptosporidium_hominis_Chro.20148:4.0E-4):0.24177):0.01912):0.01293,(Tetrahymena_thermophilia_XP001032631.2:0.13485,((Arabidopsis_thaliana_AT5G08670:0.13303,Chlamydomonas_reinhardtii_XP001691632.1:0.09097):0.01762,((Homo_sapiens_Hsa506:0.02059,Mus_musculus_Mmu11947:0.01722):0.09384,Saccharomyces_cerevisiae_YJR121W:0.12766):0.00408):0.01002):0.00678):0.00354); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112225] END; BEGIN TREES; TITLE '22.ASAP-15.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49208440:0.02149,Hammondia_hammondi_HHA208440:0.02241):0.07314,Neospora_caninum_NCLIV003110:0.10021):0.13689,Sarcocystis_neurona_SN300800530:0.25097):0.061,Eimeria_tenella_ETH00004265:0.33177):0.02121,((((Plasmodium_vivax_PVP010733000:0.11735,Plasmodium_knowlesi_PKNH0733000:0.10625):0.08156,((Plasmodium_berghei_PBANKA0835100:0.02314,Plasmodium_yoelii_PY17X0838500:0.02034):0.02558,Plasmodium_chabaudi_PCHAS0835400:0.04326):0.12367):0.02985,Plasmodium_falciparum_PF3D70934300:0.17988):0.14074,((Theileria_annulata_TA19140:0.01237,Theileria_parva_TP010154:0.12432):0.16664,Babesia_bovis_BBOVIV001290:0.16275):0.17397):0.02282,Cryptosporidium_muris_CMU009570:0.36883); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112245] END; BEGIN TREES; TITLE '15.ASAP-8.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49282180:0.0174,Hammondia_hammondi_HHA282180:0.00846):0.03086,Neospora_caninum_NCLIV023790:0.06296):0.12018,Sarcocystis_neurona_SN300400090:0.20967):0.06111,Eimeria_tenella_ETH00041215:0.23254):0.05581,(((Chromera_velia_Cvel23801:0.34462,(Vitrella_brassicaformis_Vbra13736:0.28452,Perkinsus_marinus_XP002785293.1:0.33267):0.01263):0.02646,Cryptosporidium_muris_CMU008320:0.30883):0.04195,(((Plasmodium_vivax_PVP011137900:0.01519,Plasmodium_knowlesi_PKNH1139100:0.01696):0.04753,((Plasmodium_berghei_PBANKA0109600:0.00577,Plasmodium_yoelii_PY17X0111200:0.00495):0.00745,Plasmodium_chabaudi_PCHAS0110200:0.01041):0.05694):0.00172,Plasmodium_falciparum_PF3D70611300:0.06479):0.21709):0.00843,((Theileria_annulata_TA18110:0.06974,Theileria_parva_TP030761:0.07312):0.08789,Babesia_bovis_BBOVIII000600:0.15647):0.08985); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112238] END; BEGIN TREES; TITLE '14.ASAP-7.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49218940:0.02006,Hammondia_hammondi_HHA218940:0.01954):0.06302,Neospora_caninum_NCLIV061440:0.08218):0.12151,Sarcocystis_neurona_SN300200025:0.20832):0.06479,Eimeria_tenella_ETH00008250:0.28362):0.03396,((Chromera_velia_Cvel4217:0.29469,Vitrella_brassicaformis_Vbra4019:0.36049):0.01867,(Symbiodinum_minutum_symbB.v1.2.000849.t1:0.20953,Perkinsus_marinus_XP002783280.1:0.20787):0.09099):0.04504,((((Plasmodium_vivax_PVP010519900:0.06407,Plasmodium_knowlesi_PKNH0505000:0.05938):0.07075,(Plasmodium_falciparum_PF3D70815400:0.12529,((Plasmodium_berghei_PBANKA0715400:0.02568,Plasmodium_yoelii_PY17X0715600:0.02401):0.00999,Plasmodium_chabaudi_PCHAS0724500:0.03038):0.08424):0.01056):0.16615,((Theileria_annulata_TA19720:0.06698,Theileria_parva_TP010025:0.21377):0.16009,Babesia_bovis_BBOVI002640:0.215):0.02153):0.02415,Cryptosporidium_muris_CMU018280:0.30674):0.01444); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112237] END; BEGIN TREES; TITLE 1.F1alpha.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49204400:0.01877,Hammondia_hammondi_HHA204400:0.0291):0.00644,Neospora_caninum_NCLIV020840:0.02633):0.04013,Sarcocystis_neurona_SN302300385:0.07987):0.04205,Eimeria_tenella_ETH00005270:0.13968):0.02185,((Chromera_velia_Cvel9763:0.10831,Vitrella_brassicaformis_Vbra12983:0.09927):0.02799,((Symbiodinum_minutum_symbB.v1.2.020623.t1:0.0157,Symbiodinum_minutum_symbB.v1.2.031525.t1:0.01733):0.09539,Perkinsus_marinus_XP002780357.1:0.11979):0.02757):0.01211):0.00661,(((((Plasmodium_vivax_PVP010407900:0.03657,Plasmodium_knowlesi_PKNH0403800:0.03227):0.03023,(Plasmodium_falciparum_PF3D70217100:0.05869,((Plasmodium_berghei_PBANKA0313800:0.00932,Plasmodium_yoelii_PY17X0314300:0.0071):0.00702,Plasmodium_chabaudi_PCHAS0315900:0.01305):0.03491):0.00914):0.1387,(Cryptosporidium_parvum_Cgd6610:0.01682,Cryptosporidium_hominis_Chro.60082:0.0233):0.28141):0.01249,Cryptosporidium_muris_CMU027630:0.1605):0.03012,((Theileria_annulata_TA18615:0.0211,Theileria_parva_TP030569:0.02477):0.09067,Babesia_bovis_BBOVIII002130:0.10654):0.04058):0.00651,(((Tetrahymena_thermophilia_XP001027692.2:0.164,(Homo_sapiens_Hsa498:0.01317,Mus_musculus_Mmu11946:0.01214):0.11282):0.01134,Saccharomyces_cerevisiae_YBL099W:0.16657):0.00665,(Arabidopsis_thaliana_AT2G07698:0.18979,Chlamydomonas_reinhardtii_XP001699641.1:0.20237):0.01392):0.00922); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112224] END; BEGIN TREES; TITLE '12.ASAP-5.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49247410:0.01581,Hammondia_hammondi_HHA247410:0.01593):0.04121,Neospora_caninum_NCLIV065310:0.05492):0.13917,Sarcocystis_neurona_SN302500555:0.19729):0.04684,Vitrella_brassicaformis_Vbra16763:0.29934):0.02509,Chromera_velia_Cvel9927:0.33275):0.00593,((((Plasmodium_vivax_PVP010508900:0.03134,Plasmodium_knowlesi_PKNH1319400:0.02749):0.04797,((Plasmodium_berghei_PBANKA0705200:0.01146,Plasmodium_yoelii_PY17X0705500:0.01354):0.01874,Plasmodium_chabaudi_PCHAS0714500:0.03102):0.06412):0.02722,Plasmodium_falciparum_PF3D70825400:0.09994):0.18592,(((Theileria_annulata_TA18150:0.05786,Theileria_parva_TP030769:0.0698):0.12322,Babesia_bovis_BBOVIII000730:0.24684):0.06426,Cryptosporidium_muris_CMU029630:0.30245):0.02743):0.02135,(Symbiodinum_minutum_symbB.v1.2.001739.t1:0.2976,(Perkinsus_marinus_XP002781740.1:0.05191,Perkinsus_marinus_XP002768044.1:0.09809):0.25556):0.03675); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112235] END; BEGIN TREES; TITLE '16.ASAP-9.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49285510:0.01484,Hammondia_hammondi_HHA285510:0.01528):0.04465,Neospora_caninum_NCLIV014760:0.05138):0.1571,Sarcocystis_neurona_SN300100160:0.23592):0.05864,Eimeria_tenella_ETH00007500:0.26395):0.03583,(((Plasmodium_vivax_PVP011331000:0.03617,Plasmodium_knowlesi_PKNH1340100:0.03328):0.09939,(Plasmodium_falciparum_PF3D71417900:0.10814,((Plasmodium_berghei_PBANKA1024800:0.02677,Plasmodium_yoelii_PY17X1027200:0.02184):0.01285,Plasmodium_chabaudi_PCHAS1025600:0.03576):0.0863):0.01086):0.14205,((Theileria_annulata_TA13675:0.09209,Theileria_parva_TP020531:0.08912):0.14696,Babesia_bovis_BBOVII005910:0.26581):0.05201):0.02219):0.01461,Cryptosporidium_muris_CMU022710:0.3628):0.01334,(Chromera_velia_Cvel21091:0.33114,Perkinsus_marinus_XP002783659.1:0.32812):0.02452,Vitrella_brassicaformis_Vbra19525:0.30535); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112239] END; BEGIN TREES; TITLE 7.OSCP.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((((Toxoplasma_gondii_TGME49284540:0.02262,Hammondia_hammondi_HHA284540:0.02103):0.04343,Neospora_caninum_NCLIV015180:0.06527):0.1501,Sarcocystis_neurona_SN301900755:0.23173):0.04818,(Chromera_velia_Cvel20402:0.27359,(Vitrella_brassicaformis_Vbra17642:0.22505,Symbiodinum_minutum_symbB.v1.2.012533.t1:0.25163):0.02126):0.00891):0.03162,Perkinsus_marinus_XP002783408.1:0.31803):0.01894,Eimeria_tenella_ETH00007515:0.37382):0.01471,((Theileria_annulata_TA06450:0.11179,Theileria_parva_TP010929:0.10794):0.19491,Babesia_bovis_BBOVIV008470:0.29058):0.06088):0.012,((((Arabidopsis_thaliana_AT5G13450:0.34637,(Homo_sapiens_Hsa539:0.09111,Mus_musculus_Mmu28080:0.08729):0.22009):0.00509,Saccharomyces_cerevisiae_YDR298C:0.33505):0.00342,Chlamydomonas_reinhardtii_XP001695985.1:0.38009):0.029,(Symbiodinum_minutum_symbB.v1.2.020826.t1:0.18784,((Symbiodinum_minutum_symbB.v1.2.030497.t1:7.5E-4,Symbiodinum_minutum_symbB.v1.2.030498.t1:-7.5E-4):0.15785,Symbiodinum_minutum_symbB.v1.2.007516.t1:0.14952):0.03612):0.21731):0.01423):0.00909,((((Plasmodium_vivax_PVP011411000:0.05056,Plasmodium_knowlesi_PKNH1410400:0.0519):0.12018,((Plasmodium_berghei_PBANKA1408500:0.01409,Plasmodium_yoelii_PY17X1410300:0.01325):0.01174,Plasmodium_chabaudi_PCHAS1410400:0.02732):0.1539):0.02234,Plasmodium_falciparum_PF3D71310000:0.21434):0.1659,Cryptosporidium_muris_CMU025000:0.38693):0.01693,Tetrahymena_thermophilia_XP001025180.2:0.35661); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112230] END; BEGIN TREES; TITLE '21.ASAP-14.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49245450:0.0054,Hammondia_hammondi_HHA245450:0.00953):0.01751,Neospora_caninum_NCLIV062710:0.02727):0.12808,Sarcocystis_neurona_SN300400785:0.12752):0.08247,(Eimeria_tenella_ETH00006505:0.34527,(((Plasmodium_vivax_PVP011129400:0.02907,Plasmodium_knowlesi_PKNH1130200:0.04124):0.09683,(Plasmodium_falciparum_PF3D70620100:0.1018,(Plasmodium_berghei_PBANKA1119300:0.01967,(Plasmodium_yoelii_PY17X1120400:0.0189,Plasmodium_chabaudi_PCHAS1118800:0.02017):0.00376):0.09156):0.01548):0.18092,((Theileria_annulata_TA14760:0.02824,Theileria_parva_TP020722:0.02479):0.16107,Babesia_bovis_BBOVI004130:0.18064):0.14461):0.01914):0.02221):0.02795,Vitrella_brassicaformis_Vbra7465:0.26282):0.00688,Chromera_velia_Cvel18921:0.20957,(Symbiodinum_minutum_symbB.v1.2.015683.t1:0.18321,Perkinsus_marinus_XP002772062.1:0.24198):0.0559); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112244] END; BEGIN TREES; TITLE '25.ASAP-18.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49263080:0.01112,Hammondia_hammondi_HHA263080:0.01144):0.04946,Neospora_caninum_NCLIV024830:0.07836):0.14862,Sarcocystis_neurona_SN303300060:0.23023):0.06398,Eimeria_tenella_ETH00034330:0.29252):0.04842,Cryptosporidium_muris_CMU001170:0.42102):0.03188,(Chromera_velia_Cvel28758:0.16324,Vitrella_brassicaformis_Vbra2058:0.17009):0.06065,(Symbiodinum_minutum_symbB.v1.2.009724.t1:0.22462,Perkinsus_marinus_XP002768597.1:0.29186):0.02027); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112248] END; BEGIN TREES; TITLE '27.ASAP-20.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((Toxoplasma_gondii_TGME49270360:0.01834,Hammondia_hammondi_HHA270360:0.02482):0.07383,((Chromera_velia_Cvel21389:0.28012,Vitrella_brassicaformis_Vbra20034:0.29131):0.16543,Sarcocystis_neurona_SN302500060:0.19065):0.13602,Neospora_caninum_NCLIV036300:0.07005); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112250] END; BEGIN TREES; TITLE '24.ASAP-17.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49225730:0.00854,Hammondia_hammondi_HHA225730:0.00709):0.05338,Neospora_caninum_NCLIV047080:0.07162):0.10678,Sarcocystis_neurona_SN300102510:0.20182):0.05159,Symbiodinum_minutum_symbB.v1.2.007801.t1:0.27281):0.01583,((Chromera_velia_Cvel17276:0.30868,Perkinsus_marinus_XP002788045.1:0.34688):0.02106,Vitrella_brassicaformis_Vbra16069:0.27808):0.02972,((Plasmodium_vivax_PVP011403900:0.02839,Plasmodium_knowlesi_PKNH1403200:0.03144):0.08858,(Plasmodium_falciparum_PF3D71303000:0.14237,(Plasmodium_berghei_PBANKA1401500:0.01095,(Plasmodium_yoelii_PY17X1403100:0.00608,Plasmodium_chabaudi_PCHAS1403400:0.01101):0.00615):0.09481):0.01933):0.15084); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112247] END; BEGIN TREES; TITLE 6.F0c.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49249720:0.003,Hammondia_hammondi_HHA249720:0.00303):0.05966,Neospora_caninum_NCLIV065850:0.06383):0.0436,Sarcocystis_neurona_SN303800130:0.13461):0.07005,Eimeria_tenella_ETH00023385:0.18035):0.02593,((Theileria_annulata_TA15215:0.04479,Theileria_parva_TP020804:0.0411):0.15101,Babesia_bovis_BBOVIII004620:0.19387):0.01956):0.00253,(((Chromera_velia_Cvel13917:0.10005,Chromera_velia_Cvel17295:0.10117):0.09122,Vitrella_brassicaformis_Vbra14129:0.15027):0.03582,((Tetrahymena_thermophilia_NP149381.1:0.36338,(((Arabidopsis_thaliana_AT2G07671:0.20393,Chlamydomonas_reinhardtii_XP001701531.1:0.2652):0.02119,((Homo_sapiens_Hsa516:0.05223,Mus_musculus_Mmu11951:0.05071):0.1557,Saccharomyces_cerevisiae_Q0130:0.1744):0.04348):0.10433,(Symbiodinum_minutum_symbB.v1.2.011430.t1:0.07274,Symbiodinum_minutum_symbB.v1.2.000251.t1:0.07114):0.30378):0.03117):0.05874,((Symbiodinum_minutum_symbB.v1.2.019162.t1:0.11462,Symbiodinum_minutum_symbB.v1.2.000714.t1:0.06038):0.10329,(Perkinsus_marinus_XP002782804.1:0.0012,Perkinsus_marinus_XP002772709.1:0.10664):0.09331):0.06687):0.02849):0.01506,((((Plasmodium_vivax_PVP010106100:0.02597,Plasmodium_knowlesi_PKNH0104400:0.02857):0.07513,Plasmodium_falciparum_PF3D70705900:0.0976):0.02421,((Plasmodium_berghei_PBANKA0803500:0.0097,Plasmodium_yoelii_PY17X0806200:0.00848):0.02163,Plasmodium_chabaudi_PCHAS0803800:0.02988):0.0932):0.08876,Cryptosporidium_muris_CMU016520:0.27623):0.04385); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112229] END; BEGIN TREES; TITLE '19.ASAP-12.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49310180:0.02758,Hammondia_hammondi_HHA310180:0.03764):0.04862,Neospora_caninum_NCLIV054280:0.04528):0.10845,Sarcocystis_neurona_SN300501135:0.15756):0.05291,(Chromera_velia_Cvel5942:0.35047,Vitrella_brassicaformis_Vbra8263:0.36381):0.06861):0.01402,(Theileria_annulata_TA19930:0.12939,Theileria_parva_TP010071:0.10138):0.14638):0.1423,((Plasmodium_berghei_PBANKA0405000:0.00441,Plasmodium_yoelii_PY17X0407200:0.00735):0.03052,Plasmodium_chabaudi_PCHAS0405900:0.01654):0.07275):0.01549,(Plasmodium_vivax_PVP010833600:0.04868,Plasmodium_knowlesi_PKNH0836100:0.03367):0.05514,Plasmodium_falciparum_PF3D70306600:0.0978); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112242] END; BEGIN TREES; TITLE '9.ASAP-2.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49231410:0.0087,Hammondia_hammondi_HHA231410:0.01057):0.03888,Neospora_caninum_NCLIV031670:0.05433):0.13035,Sarcocystis_neurona_SN301100865:0.18357):0.03639,Eimeria_tenella_ETH00007240:0.21763):0.03757,((Theileria_annulata_TA16245:0.04641,Theileria_parva_TP010976:0.04498):0.16591,Babesia_bovis_BBOVIII002980:0.20728):0.0831):0.01747,((Chromera_velia_Cvel13170:0.25406,Symbiodinum_minutum_symbB.v1.2.040919.t1:0.30887):0.03797,Vitrella_brassicaformis_Vbra22582:0.30946):0.04689):0.02228,(((Plasmodium_vivax_PVP010925800:0.09518,Plasmodium_knowlesi_PKNH0923000:0.0894):0.09179,(Plasmodium_falciparum_PF3D71125100:0.17679,((Plasmodium_berghei_PBANKA0923200:0.01997,Plasmodium_yoelii_PY17X0925200:0.0206):0.00686,Plasmodium_chabaudi_PCHAS0921200:0.03066):0.13406):0.02598):0.12801,Perkinsus_marinus_XP002782628.1:0.27083):0.00719,Cryptosporidium_muris_CMU011400:0.3939); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112232] END; BEGIN TREES; TITLE '17.ASAP-10.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((((Toxoplasma_gondii_TGME49215610:0.01664,Hammondia_hammondi_HHA215610:0.0194):0.01971,Neospora_caninum_NCLIV052510:0.02534):0.07796,Sarcocystis_neurona_SN301400600:0.13375):0.01236,Eimeria_tenella_ETH00015200:0.11039):0.07049,(Chromera_velia_Cvel9679:0.40071,Cryptosporidium_muris_CMU006100:0.33196):0.1177):0.01814,((Theileria_annulata_TA10680:0.0232,Theileria_parva_TP040651:0.02185):0.09015,(Babesia_bovis_BBOVIII007460:0.0,Babesia_bovis_BBOVIII007490:0.0):0.09903):0.06157):0.12654,((Plasmodium_vivax_PVP010941900:0.02697,Plasmodium_knowlesi_PKNH0939000:0.01807):0.02827,Plasmodium_falciparum_PF3D71141200:0.06182):0.01272,(Plasmodium_berghei_PBANKA0907800:0.02196,(Plasmodium_yoelii_PY17X0909200:0.00845,Plasmodium_chabaudi_PCHAS0709100:0.00957):0.01408):0.04303); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112240] END; BEGIN TREES; TITLE '18.ASAP-11.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((((Toxoplasma_gondii_TGME49290030:0.02278,Hammondia_hammondi_HHA290030:0.02089):0.02964,Neospora_caninum_NCLIV042390:0.05914):0.08158,Sarcocystis_neurona_SN300101465:0.14026):0.03973,((Chromera_velia_Cvel17739:0.28935,(Vitrella_brassicaformis_Vbra9857:0.32245,Perkinsus_marinus_XP002773712.1:0.31032):0.00611):0.09646,((Theileria_annulata_TA12215:0.01005,Theileria_parva_TP020265:0.00749):0.08501,Babesia_bovis_BBOVII004850:0.13429):0.06692):0.01366):0.14063,Plasmodium_falciparum_PF3D71360000:0.05656):0.00769,(Plasmodium_vivax_PVP011111900:0.0063,Plasmodium_knowlesi_PKNH1111300:0.0163):0.02538):0.01915,Plasmodium_berghei_PBANKA1136200:0.00367):0.00198,Plasmodium_yoelii_PY17X1137700:0.0,Plasmodium_chabaudi_PCHAS1135700:0.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112241] END; BEGIN TREES; TITLE '13.ASAP-6.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49260180:0.00997,Hammondia_hammondi_HHA260180:0.01551):0.03997,Neospora_caninum_NCLIV026820:0.05557):0.08578,Sarcocystis_neurona_SN303400175:0.16166):0.07884,((Plasmodium_vivax_PVP010207500:0.10205,Plasmodium_knowlesi_PKNH0206200:0.09004):0.05409,(Plasmodium_falciparum_PF3D70107400:0.11203,(Plasmodium_berghei_PBANKA0206000:0.03971,(Plasmodium_yoelii_PY17X0207400:0.02496,Plasmodium_chabaudi_PCHAS0204400:0.03421):0.00467):0.08454):0.03354):0.12147):0.00293,((Chromera_velia_Cvel33208:0.29621,(Vitrella_brassicaformis_Vbra8465:0.29162,(Cryptosporidium_muris_CMU028470:0.37334,Perkinsus_marinus_XP002776776.1:0.27734):0.02116):0.00786):0.01761,Eimeria_tenella_ETH00017205:0.26071):0.0071,((Theileria_annulata_TA10780:0.04567,Theileria_parva_TP040635:0.05237):0.15801,Babesia_bovis_BBOVIII007280:0.19863):0.05968); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112236] END; BEGIN TREES; TITLE '10.ASAP-3.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49268830:0.01032,Hammondia_hammondi_HHA268830:0.0158):0.04461,Neospora_caninum_NCLIV037520:0.0608):0.13995,Sarcocystis_neurona_SN300500200:0.23085):0.06109,Eimeria_tenella_ETH00032380:0.32148):0.01117,((Chromera_velia_Cvel16485:0.27906,Vitrella_brassicaformis_Vbra23050:0.27023):0.00806,(Symbiodinum_minutum_symbB.v1.2.008811.t1:0.26427,(Perkinsus_marinus_XP002775812.1:0.04389,Perkinsus_marinus_XP002775398.1:0.03804):0.2316):0.0398):0.02473,((Eimeria_tenella_ETH00017665:0.34405,((Theileria_annulata_TA02515:0.06416,Theileria_parva_TP030055:0.0651):0.20642,Babesia_bovis_BBOVIII003520:0.2583):0.05969):0.01904,((((Plasmodium_vivax_PVP010828400:0.04734,Plasmodium_knowlesi_PKNH0830600:0.05023):0.10907,(Plasmodium_berghei_PBANKA0409800:0.03392,(Plasmodium_yoelii_PY17X0412300:0.02923,Plasmodium_chabaudi_PCHAS0410700:0.03021):0.00542):0.12231):0.03129,Plasmodium_falciparum_PF3D70311800:0.20189):0.13938,Cryptosporidium_muris_CMU026200:0.38553):0.01813):0.00577); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112233] END; BEGIN TREES; TITLE '26.ASAP-19.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (Toxoplasma_gondii_TGME49263990:0.01445,(((Chromera_velia_Cvel14255:0.33856,Vitrella_brassicaformis_Vbra8656:0.30115):0.14387,Sarcocystis_neurona_SN300500490:0.20537):0.1745,Neospora_caninum_NCLIV024070:0.06499):0.04321,Hammondia_hammondi_HHA263990:0.02287); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112249] END; BEGIN TREES; TITLE '23.ASAP-16.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((Toxoplasma_gondii_TGME49201800:0.02537,Hammondia_hammondi_HHA201800:0.02332):0.06546,Neospora_caninum_NCLIV022950:0.09201):0.15844,Sarcocystis_neurona_SN300700620:0.27117):0.03339,Eimeria_tenella_ETH00015495:0.28379):0.03575,((Theileria_annulata_TA13195:0.08297,Theileria_parva_TP020442:0.09183):0.20861,Babesia_bovis_BBOVIII005120:0.28588):0.12197):0.03416,Chromera_velia_Cvel5893:0.33254,Vitrella_brassicaformis_Vbra14980:0.3199); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112246] END; BEGIN TREES; TITLE '8.ASAP-1.treb'; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] (((((Toxoplasma_gondii_TGME49310360:0.04196,Hammondia_hammondi_HHA310360:0.03839):0.0785,Neospora_caninum_NCLIV054440:0.17544):0.07932,Eimeria_tenella_ETH00000145:0.19273):0.04965,(((Plasmodium_vivax_PVP010314800:0.03358,Plasmodium_knowlesi_PKNH0314500:0.03987):0.09512,(Plasmodium_falciparum_PF3D70719100:0.11666,((Plasmodium_berghei_PBANKA0616600:0.0,Plasmodium_yoelii_PY17X0619300:0.0):0.0206,Plasmodium_chabaudi_PCHAS0618300:0.02459):0.10085):0.02635):0.08455,((Theileria_annulata_TA06630:0.03322,Theileria_parva_TP010962:0.04521):0.16567,Babesia_bovis_BBOVIV008130:0.17373):0.04424):0.03757):0.03426,Chromera_velia_Cvel5582:0.42688,Cryptosporidium_muris_CMU009020:0.34514); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112231] END; BEGIN TREES; TITLE 5.F1gamma.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((((Toxoplasma_gondii_TGME49231910:0.01248,Hammondia_hammondi_HHA231910:0.01618):0.0194,Neospora_caninum_NCLIV031920:0.03474):0.07541,Sarcocystis_neurona_SN300700860:0.11488):0.08608,Eimeria_tenella_ETH00017240:0.31197):0.02508,((Chromera_velia_Cvel10158:0.1917,Vitrella_brassicaformis_Vbra15179:0.18578):0.02655,Perkinsus_marinus_XP002778693.1:0.23444):0.01052):0.01966,((((Plasmodium_vivax_PVP011412300:0.01997,Plasmodium_knowlesi_PKNH1411700:0.01528):0.06328,((Plasmodium_berghei_PBANKA1409800:0.01106,Plasmodium_yoelii_PY17X1411600:0.01109):0.00697,Plasmodium_chabaudi_PCHAS1411700:0.01518):0.07515):0.01585,Plasmodium_falciparum_PF3D71311300:0.10615):0.15858,((Theileria_annulata_TA19395:0.01697,Theileria_parva_TP010201:0.01488):0.14039,Babesia_bovis_BBOVIV005350:0.16008):0.07956):0.02028):0.02213,Tetrahymena_thermophilia_XP001010761.1:0.31731):0.01297,(Cryptosporidium_muris_CMU017340:0.33918,((Arabidopsis_thaliana_AT2G33040:0.26587,Chlamydomonas_reinhardtii_XP001700627.1:0.26298):0.03721,((Homo_sapiens_Hsa509:0.04548,Mus_musculus_Mmu11949:0.04176):0.22201,Saccharomyces_cerevisiae_YBR039W:0.32169):0.04397):0.01354):0.00573,(Symbiodinum_minutum_symbB.v1.2.004028.t1:0.00405,Symbiodinum_minutum_symbB.v1.2.004029.t1:0.00546):0.39409); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112228] END; BEGIN TREES; TITLE 3.F1delta.treb; LINK TAXA = TaxaForAnalysisStep23074; TREE 'PAUP 1+' = [&U] ((((((((Toxoplasma_gondii_TGME49226000:0.0,Hammondia_hammondi_HHA226000:0.0):0.03387,Neospora_caninum_NCLIV046830:0.03796):0.12295,Sarcocystis_neurona_SN300102655:0.16434):0.091,((Chromera_velia_Cvel21479:0.18,Vitrella_brassicaformis_Vbra4892:0.17294):0.02349,(Symbiodinum_minutum_symbB.v1.2.019144.t1:0.16578,Perkinsus_marinus_XP002785641.1:0.18261):0.03271):0.04158):0.04969,((((Plasmodium_vivax_PVP010948300:0.01473,Plasmodium_knowlesi_PKNH0945600:0.01124):0.0302,Plasmodium_falciparum_PF3D71147700:0.04772):0.018,((Plasmodium_berghei_PBANKA0901400:0.0087,Plasmodium_yoelii_PY17X0902800:0.00429):0.00236,Plasmodium_chabaudi_PCHAS0702600:0.00413):0.06317):0.2516,Cryptosporidium_muris_CMU008960:0.32):0.01573):0.0143,((Theileria_annulata_TA12155:0.02252,Theileria_parva_TP020253:0.02293):0.21224,Babesia_bovis_BBOVIII004400:0.24869):0.06299):0.06228,Symbiodinum_minutum_symbB.v1.2.029645.t1:0.37671):0.03625,((Arabidopsis_thaliana_AT5G47030:0.30276,(Homo_sapiens_Hsa513:0.06506,Mus_musculus_Mmu66043:0.07184):0.26255):0.00994,Chlamydomonas_reinhardtii_XP001698736.1:0.31724):0.0,Saccharomyces_cerevisiae_YDL004W:0.32134); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr112226] END;