#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 21, 2026; 12:14 GMT

TreeBASE (cc) 1994-2008

Study reference:
Bills G., Collado J., Ruibal C., Peláez F., & Platas G. 2005. Hormonema carpetanum,
sp. nov., a new lineage of dothideaceous black yeasts from Spain. Mycological
Progress, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1257]

[ The following blocks are input data for analysis step 2322 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2322;
        DIMENSIONS NTAX=15;
        TAXLABELS
            Hormonema_carpetanum_ATCC74360
            Hormonema_carpetanum_F059461
            Hormonema_carpetanum_F059904
            Hormonema_carpetanum_F128213
            Hormonema_carpetanum_F131395
            Hormonema_carpetanum_F154715
            Hormonema_carpetanum_F154786
            Hormonema_carpetanum_TRN201
            Hormonema_carpetanum_TRN24
            Hormonema_carpetanum_TRN25
            Hormonema_carpetanum_TRN278
            Hormonema_carpetanum_TRN31
            Hormonema_carpetanum_TRN40
            Kabatina_juniperi
            Sydowia_polyspora
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1298]

	TITLE Actin;
	LINK TAXA = TaxaForAnalysisStep2322;
	DIMENSIONS NCHAR=248;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        ]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Hormonema_carpetanum_ATCC74360     TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCGAGCGCA-CCCTTACCTTGACGACAATCTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTGATCAAACCAGATCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCC-GAAAAGGACTCGTAA
Hormonema_carpetanum_F059461       TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAAACGAGCGCA-CCCTTACCTTGACGACAATCTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTGATCAAACCAGATCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_F059904       TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAAACGAGCGCA-CCCTTACCTTGACGACAATCTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTGATCAAACCAGATCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_F128213       TATGTGCAAGGCCCCGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCGAGCGCA-CCCTTACCTTGACGACAATCTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTGATCAAACCAGATCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCC-GAAA-GGACTCGTAA
Hormonema_carpetanum_F131395       TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCGAGCGCA-CCCTTACCTTGACGACAA-CTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTGATCAAACCAGATCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCC-GAAAAGGACTCGTA-
Hormonema_carpetanum_F154715       TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCAAGCGCA-CCCTCACCTTGACGACAACCCCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTCATCAAACCAGATCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_F154786       TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCGAGCGCA-CCCTTACCTTGGCGACAATCTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTGATCAAACCAGATCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_TRN201        TATGTGCAAGGCCCG-TTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCAAGCGCA-CCCTTACCTTGACGACAACCTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATCTATCAAAACAGATTCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_TRN24         TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCGAGCGCATCCCTGACCTTGACGACAATCTTTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTCATCAAACCAGACCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_TRN25         TATGTGCAAGGCCCG-TTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCAAGCGCA-CCCTTACCTTGACGACAACCTCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATCTATCAAAACATATTCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_TRN278        TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCTAGAGCTGTTTTCCGTAAGTCAACAATCAAGCGCA-CCCTCACCTTGGTGATAACCACTCTAACGCGCCACCGCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTCATCAAACTAGATCCTCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAAA-GGACTCGTAA
Hormonema_carpetanum_TRN31         TATGTGCAAGGCCCG-TTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCAAGCGCA-CCCTTACCTTGACGACAACATCTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATCTATCAAAACAGATTCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Hormonema_carpetanum_TRN40         TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAATCGAGCGCATCCCTGACCTTGACGACAATCTTTCTAACGCGCC---GCAGCCTCCATTGTCGGAAGACCTCGCCACCATGGGTACGCTATTCATCAAACCAGACCCCCCGCTTGATGACTTTGATTGACAAGT---------CTTGCAGTATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Kabatina_juniperi                  TATGTGCAAGGCCCGGTTTCGCCGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTAGATCTGCTGACCATCTCTGTCATCACCTCGCCC---ATCTAACGCGCC---GCAGCCTCGATTGTCGGAAGACCTCGCCACCATGGGTACGATATCCCCAAATCCGCATT-----------TTCCTCCTCTAGCTACTAACCCCTCCCCCGCAGCATCATGATTGGTATGGGCCAGAA--GGACTCGTAA
Sydowia_polyspora                  TATGTGCAAGGCCCCGTTTCGCTGGTGACGACGCACCCAGAGCTGTTTTCCGTAAGTCAACAAAGCGCATGTCCAAATATGCCAGCCATGAT--ATCTAACGCGTC---GCAGCCTCGATTGTCGGAAGACCTCGCCACCATGGGTACGCTTGCCTTGCTTTCCTTGAAATCCGCAATATCCGAAATGCAAACAAAACTGATCTCTACGCAGTATCATGATTGGTATGGGCCAGAAA-GGACTCGTA-
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = Actin) = 
		N: 1-248;
CODONPOSSET  CodonPositions (CHARACTERS = Actin) = 
		N: 1-248;
END;
[ The following blocks are output data for analysis step 2322 ]
BEGIN TREES;
      TITLE Tb7097;
      LINK TAXA = TaxaForAnalysisStep2322;
      TREE Fig._2 = [&R] (Sydowia_polyspora,Kabatina_juniperi,(((Hormonema_carpetanum_TRN278,Hormonema_carpetanum_F154715),(Hormonema_carpetanum_TRN24,Hormonema_carpetanum_TRN40),Hormonema_carpetanum_ATCC74360,Hormonema_carpetanum_F059461,Hormonema_carpetanum_F059904,Hormonema_carpetanum_F131395,Hormonema_carpetanum_F128213,Hormonema_carpetanum_F154786),(Hormonema_carpetanum_TRN25,Hormonema_carpetanum_TRN31,Hormonema_carpetanum_TRN201)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1986]


END;