#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 11, 2025; 19:43 GMT TreeBASE (cc) 1994-2008 Study reference: Sotome K., Hattori T., Maekawa N., & Matozaki T. 2019. Melanoderma boninense, a new species of Melanoderma (Polyporales, Agaricomycota) from Bonin Islands in Japan. Mycoscience, 60(3): 177-183. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22987] [ The following blocks are input data for analysis step 23227 ] BEGIN TAXA; TITLE TaxaForAnalysisStep23227; DIMENSIONS NTAX=27; TAXLABELS Amauroderma_rugosum Antrodia_gossypium Antrodia_heteromorpha Boletopsis_leucomelaena Datronia_mollis Datroniella_scutellata Echinochaete_russiceps Favolus_brasiliensis Favolus_emerici Hydnellum_geogenium Lentinus_tigtinus Lenzites_betulina Melanoderma_bonnisens_28826 Melanoderma_bonnisens_TUFC101522 Melanoderma_bonnisens_TUFC101524 Melanoderma_disciforme_Yuan1643 Melanoderma_disciforme_Yuan1675 Melanoderma_microcarpum Perenniporia_tephropora Picipes_badius Picipes_tubaeformis Polyporus_brumalis Polyporus_squamosus Polyporus_tuberaster Pseudofavolus_cucullatus Pycnoporus_cinnabarinus Trametes_suaveolens ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M53304] TITLE Melanoderma_ITS; LINK TAXA = TaxaForAnalysisStep23227; DIMENSIONS NCHAR=629; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Amauroderma_rugosum GCTGGCCTT----------CCGAGGCA-TGTGCACGC--CCTGCTC------------AT-C-CACT-CTACACCTGTGAACTTACTGTGGGTTT-CATATCGT-----GAAGCGTGTCGTTTA------------ACGGCTCGTGAAGCGGTCTGTGCCT------GCGTTT--ATTACAAACCCTTGT-AAAGTAAT-AGAACGTGTATTG----CGATGT-----AACGCATCTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATCTTCAACCTAAAAGCCTTT-GC-----GGGTTTGTTAGGCTTGGA-CTTGGAGG-----CTTGTCGGCT---------------------CATTAGTCGGCTCCTCTTAAATGCATTAG--CTTGGTTCCT----TGCGGAT-CGGC---------TGTCGGTGTGATAA-TTGTCAACGCCGCGA-CCG-TGAAGCGTT--------TGG---CGAGCTTCTAA Antrodia_gossypium GCTGGCTCTCTC-------TGGGGGCA-TGTGCACAC--TCTATTCA-------TCTATT-T-CTAT-ATACACCTGTGCACCTTTTGTGGGTTG-GTCATATG-----AGGGAAAGTTGAAAG----------------GCTTTTGTTCTAGACCTTCCT------ACGTTTTTATTATAAACCCTAGC--ATGTCTT-TGAATGTCTTTGC----ATTAAT-----GATGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGAATTATCAATCCTGTTTTACTTTATT------GTGAAATGGGTTTGGA-TTTGGAGGC--TTTTTGCTGGCTGCATTT----------ATATTTGCTGGTCGGCTCCTCTTGAATATATTAG--CTTGAGTCTTTTAATGAGATT-GGCT---------TATCGGTGTGATAA---ATTTGCGCCGTGG-TTGGTTTCATGTAAAT-----------TAAGCTTCTAA Antrodia_heteromorpha GCTGGCCTTTC--------AAAGGGCA-TGTGCACGC--CTCGCTTC----------AAT---CCAC-TTACCCCTGTGAACACTTTGTAGGTCG-GCTCAAGG-------GACAAATTCTTAA--------------CGGGGTTTGTTTCGGGTCTTCCT------ATGTTT-TATTACAAACGTTT----AAAGTCT-AAAGAATGTACTC----GCGTCT-----AACGCAT-TAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGAATTATCAACTTGTTTATCTTT-GTA--------TGAACGCAGTTGGA-TTTGGAGGC---CATTGCCGGATTGT------------------AATGACTCGGCTCCTCTTGAATGCATTAG--CTCGAACCTT----TGCGGAC-CAGC---------TTTTGGTGTGATAA-TTGTCTACGCCGCTAACTG-AGACGCATGAACG----GGA---TCGGCTTACAG Boletopsis_leucomelaena GCTGGCCTCTCTT-----CTGGAGGCA-TGTGCACAC--CTGGATCA--------TTCATCCCCTTC-ACACACCTGTGCACAACCTGTAGCTTG-GGATGATCA---CGGAGACCGTCTTTCT---------------GGCGGTGCCGAATGCCCTCGCT------ATGATCTTTTGATACACACCTTC--ATATAACGTTCATGTTGATGA----GATTAT-----TTTGAATGGAA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACTGCCTTGGCTTT-TTTTT-TGCCAAAAGTGAAGTTGGATTTTGGAGGTT-TTGTTGCTGGCATTGGAGCGTCTGATTGATGCTTGCTTGTTGGCTCCTCCTAAAAGCAT------GCAGAGCTT----GGCAAAG-CGAT----------GTCGATGTGATAA-TTATCTACGTTGTCG-TC{AG}---AAGTGTGA-------AGA---TCTGCTGTTGG Datronia_mollis GCTGGCCTT-----------AAAGGCA-TGTGCTCGC--CCTGTTCA----------AAT-C-CACT-CTACACCTGTGCACTTACTGTGGGCTT-TGGTTAGA-----AAGCCAGGTTTATAA----------------CCTGACCTTTGAGCCGGGCTC------ATGTTTACTTTACAAACAACT----TAGTATC-AGAATGTGTATTG----CAATTT-----AATGCAT-TTT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCATGAAATTCTCAACCTACAAAGCTTT-GT------GTTTTGTTAGGCTTGGA-?TTGGAGG-----CTTGCTGGCTCTT-----------------------GTCAGCTTCTCTTAAATTCATTAG--CTTGATTCCT----TGTGGAT-CGGC----------CTCGGTGTGATAA-TTGTCTACGCTGTGA-CCG-TGAAACATA--------TGG---TGAGCTTCTAA Datroniella_scutellata GCTGGTCTC----------ACCAGGCA-TGTGCTCGC--CCTGCTCA----------AAT-C-CACT-CTACACCTGTGCACCTACTGTGGGCTT-GGTATATG-----GGGGTCTGGTTTTAC----------------CTGGCCCCTTGAGTCAAGCTC------ATGTTT-CATTACAAACACT-----TAGTATC-AGAATGTTTATCA----TGATGT-----AACACATATAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACACCTGTTTGAGTGTCATGTAATTCTCAACCTAACTGCCTTT-ATT----GGGCTTGTTAGGATTGGATATTGGAGG-----CTTGCCGGTT------------------------TAGTTGGCTCCTCTCAAATGCATTAG--CTTGGTTCTC----TGTGGAT-CAGC---------TCTCGGTGTGATAA-TTGTCTATGCCGTGA-CTG-TGAAATGCT--------TGA---CAAGCTTCTAA Echinochaete_russiceps GCTGGTTCTCTTTAACCAAGAGAACAA-TGTGCTCGC--TCTGTTC-----------AAT-C-CACT-CTACACCTGTGCACTTATTGTGGGTGT-TGATTGCG-----AGGAGGGGGGACTTG-------------TTTCCCTTCCTTCGAGTCAACCTC------ACGTTT-TACTACAAACT-------CAGTATT-AGAATGTGTATTG----CAATAT-----AATGCATTTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCATGAAATTCTCAACTTACACATCCTT-GTAACAAAGGTTGTATAAGCTTGGACTTTGGAGGTC-TCATTGTCGGTTT--------------------TTAACTCCGGCTCCTCTTAAAAGCATTAG--CTTGGTTTATTT--TATGGAC-CAGC---------TTTCAGTGTGATAG-TTGTCTACACTGTGG-CTG-TGAAGTATGTTTG----TGA---CCAGCTTCTAA Favolus_brasiliensis GCTGGCCTTTA--------CGAAGGCA-TGTGCACGC--CCTGCTC-----------AAT-C-CACT-CTACACCTGTGAACTTACTGTGGGTTT-CGAGAAGG----------GGGCCGTAAA----------------AAAGCCTTCAGATTGAAGCCC------ACGTTT-AACCACAAACACTGTC-ATTGTATT-TGAATG--TATCG----CGATGTTAATAAACGCATCTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACACCTGTTTGAGCGTCGTGTAACTCTCAACCTACAAGTCCTTTGTT----GACTTTGTTAGGCTTGGATATTGGAGGT---CTTTGCTGGCTGTT------------------TATTAGCCAGCTCCTCTTAAATGCATTAG--CTTGGTTCCTC---TGCGAAT-CGGC---------TCTCGGTGTGATAA-ATGTCTACGCCGTGA-CCG-TGAAGCGTTTAT-----GGG---CGAGCTTCTAA Favolus_emerici GCTGGCCTT----------ACGAGGCATTGTGCACAC--CCTGCTC-----------AAT-C-CACT-CTACACCTGTGAACTAACTGTGGGTCT-TTTGGGGG-------TTTGCATCTTTTG--------------------TAAGCCTTTGGGGGCTC------ATGTTTACTTTACAAACACTCAT-AAAGTAAT-GGAATGTGTATTG----CGATGT-----AATGCATCTTT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACACCTGTTTGAGTGTCGTGTAATTCTCAACCTACAAGGTCTTTGTG----GGCCTTGTTAGGCTTGGATATTGGAGGATATAATTGTCGG-----------------------CATGAGTCGGCTCCTCTTAAATGCATTAG--CTTGGTCCTT----TGTGGAT-CGGC---------TCTCGGTGTGATAAGTTGTTTATGCCGTGA-CCG-TGAAGCATTTTCTA---TGGGAAGGAGCTTATAA Hydnellum_geogenium GCTGGTCCTT---------AAGGGGCA-TGTGCACACACCTCGACCGGATGTGTTCCAATCCTTTCT-TTACACCTGTGCACGATCTGTAGCTGG-AGGGGATGA----TCACAGAGTTGTTCA----------------GACTTTGAATGCCCCTTCGCTATGAACGCCTTTTTATTATACCCCTTGTAAAAGTCCTTTTGAATGTTTTGATCT--GCGTGTAAC--AGCGCAAATGTAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTATCAACTGCTTTGGTTTT-GTT------CCAAAGTGAAGTTGGACTTTGGAGGTC-TTATTGTCGGCTTGT------------------------TCGGCTCCTCCCAAAAGCATTAT--AATAAAGCCC----TTTTTCT-TGGCAAAAAGTATCTTTGACGTGATAA-TTGTCTACGTCGCAG-AGA---AAGCCTTA-------TAGG-AGGGGCTTATAT Lentinus_tigtinus GCTGGCCTT----------CCGAGGCA-TGTGCACGC--CCTGCTC------------AT-C-CACT-CTACACCTGTGCACTTACTGTGGGTTT-CAGGAGCTT---CAAGGGCGTTTCTTAC----------------GCCGGAGTTGTGACTGGGCCT------ACGTTT--ACTACAAACTCTTAC--AAGTATC-AGAATGTGTATTG----CGATGT-----AACGCATCTCT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACGGGTTCTTAACG--GGACTTGCTTAGGCTTGGA-CTTGGAGGC---TCTTGTCGGCTTGCTTT--------------CGTCAAGTCGGCTCCTCTCAAATGCATTAG--CTTGGTTCTT----TGCGGATCCGGC---------TCACGGTGTGATAA-TTGTCTACGCCGCGA-CCGTTGAAGCGTTTTAA----TGGG-ACTAGCTTCTAA Lenzites_betulina GCTGGCCTT----------CCGAGGCA-TGTGCACGC--CCTGCTC------------ATCC-CACT-CTACACCTGTGCACTTACTGTAGGTC---------------GGCGTGGGTTTCTAGC--------CTCCGGGTTTGAAGCATTCTGCTGGCCT------ATGTAC-ATTTATAAACACTTTA--AAGTAAC-AGAATGTAAAC------GCGTCT-----AACGCATTTTA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGAATTCTCAACCCATAAATCCTT-GTG----A---TGTATGGGCTTGGA-TTTGGAGG-----CTTGCTGGTCCCTC-----------------TCGGGATCGGCTCCTCTTGAATATATTAG--CTTGATTCCG----TGCGGAT-CGGC---------TCTCAGTGTGATAA-TTATCTACGCTGTGA-CCG-TGAAGCGTT--------TGG---CGAGCTTCTAA Melanoderma_bonnisens_28826 GCTGGCCTG----------TATTGGCA-TGTGCTCGC--CCTGCTCA---------AAAT-C-CACT-CTACACCTGTGCACTTACTGTGGGCTT-CTGGTCTT------GTTCCGGTCAGTGAT---------------GACCTTTCAATATTGGAGCCC------ACGTTT-TACTACAAACGTCC----AGTCAAT-AGAATGTGTATCAT---TGATGTCA---AATGCATCCAT-ATATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTC--TCAACGGAGGAGCACGCCTGTTTGAGTGTCATGAATATCTCAACCTAGCATGCTTG----------CTGTGTTAGAGTTGGA-CTTGGAGGC---CTTTGTCGGTATGA------------------TAAGTATTGGCTCCTCTCAAATGCATTAG--CCTGGTTCCT----TACGGAT-CGGTG-----TACCCTCGGTGTGATAG-TTGTTTATGCCGTGG-CCG-TGAAGTGTTT-------TGG---CCAGCTTCTAG Melanoderma_bonnisens_TUFC101522 GCTGGCCTG----------TATTGGCA-TGTGCTCGC--CCTGCTCA---------AAAT-C-CACT-CTACACCTGTGCACTTACTGTGGGCTT-CTGGTCTT------GTTCCGGTCAGTGAT---------------GACCTTTCAATATTGGAGCCC------ACGTTT-TACTACAAACGTCC----AGTCAAT-AGAATGTGTATCAT---TGATGTCA---AATGCATCCAT-ATATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTC--TCAACGGAGGAGCACGCCTGTTTGAGTGTCATGAATATCTCAACCTAGCATGCTTG----------TTGTGTTAGAGTTGGA-CTTGGAGGC---CTTTGTCGGTATGA------------------TAAGTATCGGCTCCTCTCAAATGCATTAG--CCTGGTTCCT----TACGGAT-CGGTG-----TACCCTCGGTGTGATAG-TTGTTTATGCCGTGG-CCG-TGAAGTGTTT-------TGG---CCAGCTTCTAG Melanoderma_bonnisens_TUFC101524 GCTGGCCTG----------TATTGGCA-TGTGCTCGC--CCTGCTCA---------AAAT-C-CACT-CTACACCTGTGCACTTACTGTGGGCTT-CTGGTCTT------GTTCCGGTCAGTGAT---------------GACCTTTCAATATTGGAGCCC------ACGTTT-TACTACAAACGTCC----AGTCAAT-AGAATGTGTATCAT---TGATGTCA---AATGCATCCAT-ATATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTC--TCAACGGAGGAGCACGCCTGTTTGAGTGTCATGAATATCTCAACCTAGCATGCTTG----------TTGTGTTAGAGTTGGA-CTTGGAGGC---CTTTGTCGGTATGA------------------TAAGTATCGGCTCCTCTCAAATGCATTAG--CCTGGTTCCT----TACGGAT-CGGTG-----TACCCTCGGTGTGATAG-TTGTTTATGCCGTGG-CCG-TGAAGTGTTT-------TGG---CCAGCTTCTAG Melanoderma_disciforme_Yuan1643 GCT--------------------CTTG-TGTGCTCGC--CCTGCTCA---------AAAT-C-CACT-CTACACCTGTGCACTTACTGTGGGCTT-TTGCGGGG---------------------------------TTTGTTGACCCTTGTTGAAAGCCT------ACGTTT-CATTACAAACGACCA---AGTCATT-AGAATGTGTATCATCGATGTTAT-----AACGCATCTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTC--TTAACGGAGGAGCACGCCTGTTTGAGTGTCGTGAATATCTCAACCTTGACAACTTT-GTT--------GTTAGAGGCTTGGA-CTTGGAGGAC-TCATTGTCGGTGCTT-------------------TGTTACCGGCTCCTCTCAAATGCATTAGCCCCTGGTTCATTT-GTGTGAAA-CGGT------TAATCTCGGTGTGATAG-TTGTCTACGCCGTGGGCCGTGTAAGCATATGTTGTATTGA--CCGGGCTTCTAA Melanoderma_disciforme_Yuan1675 GCT--------------------CTTG-TGTGCTCGC--CCTGCTCA---------AAAT-C-CACT-CTACACCTGTGCACTTACTGTGGGCTT-TTGCGGGG---------------------------------TTTGTTGACCCTTGTTGAAAGCCT------ACGTTT-CATTACAAACGACCA---AGTCATT-AGAATGTGTATCATCGATGTTAT-----AACGCATCTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTC--TTAACGGAGGAGCACGCCTGTTTGAGTGTCGTGAATATCTCAACCTTGACAACTTT-GTT--------GTTAGAGGCTTGGA-CTTGGAGGAC-TCATTGTCGGTGCTT-------------------TGTTACCGGCTCCTCTCAAATGCATTAGCCCCTGGTTCATTT-GTGTGAAA-CGGT------TAATCTCGGTGTGATAG-TTGTCTACGCCGTGGGCCGTGTAAGCATATGTTGTATTGA--CCGGGCTTCTAA Melanoderma_microcarpum GCTGGCTTT----------TATTGGCA-TGTGCTCAC--TCTACTCA----------ATTCCACTCTAC-ACACCTGTGCACTTACTGTGGGCTTTTTGGT-AT-------TGTTGGTCAGTGAC---------------GACTTTTCAATCTGGAAGGCCTATGTTATGTTT-TACTACAAACGTCC----AGTCAAC-AGAATGTGTATCAT---TGATGTT----AATGCATCTAT-ATATAACTTTTAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTT--TCAACGGAGGAGCACGCCTGTTTGAGTGTCATGAATATCTCAATCTAACACACTTG------------TTGTTAGAGTTGGA-TTTGGAGGC---CTTTGTTGGTACAT-------------------TGGTATCGGCTCCTCTCAAATGCATTAG--CTTGGTTCCT----TGCGGAT-CGGTA-----TA-CCTCGGTGTGATAG-CTGTTTACGCTGTGG-CCA-TGAAGTGTTT-------TGG---CCAGCTTCTAA Perenniporia_tephropora GCTGGCCTT----------CCGAGGCA-TGTGCACGC--CCTGCTC------------AT-C-CACT-CTACACCTGTGCACTTACTGTGGGTTT-CAGATGGC-----GTAGTGAGCCTTTAC-------------GGGCTTGTGAAAGCATCTGTGCCT------GCGTTT--ATTATAAACTCTTAT--AAGTAAC-AGAATGTGTATTG----CGATGT-----AACGCATCTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATCATCAACCTATAAACCTTT-GT------GGGTTTGTAGGCTTGGA-TTTGGAGG-----CTTGTCGGCC---------------------TAACAGTCGGCTCCTCTTAAATGCATTAG--CTTGATTCCT----TGCGGAT-CGGC---------TCTCGGTGTGATAA-TTGTCTACGCCGCGA-CCG-TGAAGCGTT--------TGG---CGAGCTTCTAA Picipes_badius GCTGGCTTTTCC-----------AGCA-TGTGCTCGC--CCTGTTC-----------AAT-C-CACT-CTACACCTGTGCACCAACTGTAGGCTT-TTGGTGGGCTTGCTTTCCTTGTCCTTTACCG------GGCGTTGAGGGCTTGTTAACCTTGGCTT------GCGTTT-TCATACAAACCCTGTAAAAAGTAAAAAGAATGTGTATTG----CGATAT-----AACGCATTTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAGGCTTTTGT---------TTTGTAGGCTTGGA-CTTGGAGGC----GTTGCCGATGTTTTTA---------------TTTACGTTGGCTCCTCTCAAATGCATTAG--CTAGCGTCCTT---TGCGGAT-CAGC--------TTTTCGGTGTGATAA-TTGTCTACGCCGTAG-TTG-TGAAGCGTTTT------TGA---CCAGCTTCTAA Picipes_tubaeformis GCTGGCTTTCATTT---TTTGGAAGCA-TGTGCTCGC--CCTGCTC-----------AAT-C-CACT-CTACACCTGTGCACTAACTGTGGGTCT-TGTGTGTG-----GGCCTTCGTCCTTCG-----------CGGGGCGTCGGCTTTAACCCTGGCCT------ACGTTT-TCTTACAAACACTTTA-AAAGTATCGAGAATGTGTATTG----CGACAT-----AACGCATTTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAAACTTT-------------TTGTAGGCTTGGA-CTTGGAGGT----ATTGCCGACGTTTTC----------------ATAATGCCGGCTCCTCTCAAATGCATTAG--CTCGCGTCCT----TGCGGAT-CGGC--------TCTTCGGTGTGATAA-TTGTCTACGCCGTGG-TCG-TGAAGCGTTTT------TGA---CCGGCTTCTAA Polyporus_brumalis GCTGGCCTT----------CCGAGGCA-TGTGCACGC--CCTGCTC------------AT-C-CACT-CTACACCTGTGCACTTACTGTGGGTTT-CAGGAGCTT---CGAAGCGGGGGCTTAA---------TCGCCTTCGCCGAGTTGTTACTGGGCCT------ACGTTT--ACCACAAACACTTTA--AAGTAAC-AGAATG--TAATC----GCGTCT-----AACGCATCTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACAAGTTCTTAACC--GGACTTGCTTAGGCTTGGA-CTTGGAGG-----CTTGTCGGCTCTT-------------------AGCAGTCGGCTCCTCTCAAATGCATTAG--CTTGGTTCCT----TGCGGAT-CGGC---------TCACGGTGTGATAA-TTGTCTACGCCGCGA-CCGTTGAAGCGTTTTAA----TGG---CCAGCTTCTAA Polyporus_squamosus GCTGGTCTT----------TTCAGGCA-AGTGCTCGC--CTCGTTCA----------AAT-C-CACT-CTACACCTGTGCACTTACTGTGGACTT-TGGTATTC-----TTGGAGGGTCCTTTG----------------GCCCTTTATAAATCCGGGTTC------ATGTTT-TATTATATATACGCTT--CAGTATTGAGAATGTGTATTG----TGATGT-----AACACATCGTT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACACCTGTTTGAGTGTCATGAAATTCTCAACCTTACAAACTTTTGT------GTTTGATTTGGCTTGGA-GTTGGAGG-----CTTGCTAATGGGAA-----------------ATTCCTTTGGCTCCTCTCAAATGCATTAG--CTTGGTTCCT----TGCGGAT-TGGC---------TCCTGGTGTGATAA-ATGTTTACGCCGCAG-CTGTTGAAGC?TTTT------GGG---CAAGCTCCTAA Polyporus_tuberaster GCTGGCCTTTCTT----GCGAGAGGCA-TGTGCTCGC--CTTTGCTC----------AAT-C-CACT-CTACACCTGTGCACTTACTGTGGGTTT-TTGGTCGG-----AGGGGTTGCGCTCCG-----------GCGTGGCTCCTTTGAAACCTTGACCC------ACGTTT-CACTACAAACACG-----ATGTATC-AGAATGTCTATTG----CGATGTT----AACGCATTTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCATTCCGAGGAGCACGCCTGTTTGAGTGTCATGAAATTCTCAACCTGCGAGATCCTTGTG----GTCTTCGTAAGGCTTGGACTTTGGAGGC---TTTTGTCGG-----------------------CGATTGTCGACTCCTCTCAAATGCATTAG--CTTGGTTCCT----TGCGGAT-CGGC---------TTTCGGTGTGATAG-TTGTCTACGCCGTGA-CCG-TGAAGCGTTT-------TGG---CGAGCTTCTAA Pseudofavolus_cucullatus GCTGGCCTTCAC-------CCAAGGCA-TGTGCTCAC--CCTGTTCA----------AAT-C-CACT-CTACACCTGTGCACTTACTGTGGGCTT-TGGATCTG-----TTTTTCGGTTCTGAGGGGTCAAACCTTTGGAAGCGCAATTCGCTCCAGGCTC------ACGTTTTTACTACAAACACTTT---TGGTATT-AGAATGTGTATTG----CGATGTT----AATGCATCTTT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAAGTTGTTGTTG--CAACTTTGTTTGGCTTGGA-TCTGGAGGC----TTTGCTGGCTTGCT-----------------CTGAGTTCAGCTCCTCTTAAATGCATTAG--CTTGGTTCCT----TGTGGAT-CAGC---------TCTCGGTGTGATAAATTGTCTATGCCGTGA-CTG-TGAAGCGTT--------TGG---CGAGCTTATAA Pycnoporus_cinnabarinus GCTGGCCTT----------CCGAGGCA-TGTGCACGC--CCTGCTC------------AT-C-CACT-CTACACCTGTGCACTTACTGTAGGTTT-GGCGTGGG-----CTTCGGGGGCCTCCGG------------GCTTTCGAGGCATTCTGCCGGCCT------ATGTAA-CACTACAAACACATA---AAGTAAC-AGAATGTCATC------GCGTCT-----AACGCACATAA-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGAATTCTCAACCCACACGTCCTT-GT------GATGATGTGGGCTTGGA-TTTGGAGG-----CTTGCTGGCCCTT-------------------GTGGGTCAGCTCCTCTTGAATGCATTAG--CTTGATTCCG----TGCGGAT-CGGC---------TCTCAGTGTGATAA-TTGTCTACGCTGTGA-CCG-TGAAGCGTTT-------TGG---CGAGCTTCTAA Trametes_suaveolens GCTGGCCTT----------CCGAGGCA-TGTGCACGC--CCTGCTC------------AT-C-CACT-CTACACCTGTGCACCTACTGTAGGTT---------------GGCGTGGGCTCCTTC----------------GCGGGAGCGTTCTGCCGGCCT------ATGTAT--ATTACAAACCCCTTA--AAGAAAC-AGAATGTAAAC------GCGTCT-----AACGCATCTTA-ATACAACTTTTAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCCGTAAATCCTT-GTG----A---TCTACGGGCTTGGA-CTTGGAGG-----CTTGCTGGCCCTT--------------------GCGGTTGGCTCCTCTTGAATGCATTAG--CTTGATTCCG----TATGGAT-CGGC---------TCTCAGTGTGATAA-TTGTCTACGCTGTGA-CCG-TGAAGTGTTT-------TGG---CGAGCTTCTAA ; END; [ The following blocks are output data for analysis step 23227 ] BEGIN TREES; TITLE Melanoderma_ITS_MP_ML; LINK TAXA = TaxaForAnalysisStep23227; TREE ITSMPtree3 = [&R] (Hydnellum_geogenium,Boletopsis_leucomelaena,(Antrodia_heteromorpha,(Antrodia_gossypium,((((((Polyporus_brumalis,Lentinus_tigtinus),(Amauroderma_rugosum,Perenniporia_tephropora)),(((Melanoderma_microcarpum,(Melanoderma_bonnisens_28826,Melanoderma_bonnisens_TUFC101524,Melanoderma_bonnisens_TUFC101522)),(Melanoderma_disciforme_Yuan1643,Melanoderma_disciforme_Yuan1675)),(Polyporus_tuberaster,(Picipes_tubaeformis,Picipes_badius)))),(Pseudofavolus_cucullatus,((Polyporus_squamosus,Datroniella_scutellata),(Datronia_mollis,Echinochaete_russiceps)))),(Favolus_brasiliensis,Favolus_emerici)),(Trametes_suaveolens,(Lenzites_betulina,Pycnoporus_cinnabarinus)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr121825] END; BEGIN TREES; TITLE Melanoderma_ITS_MP_ML; LINK TAXA = TaxaForAnalysisStep23227; TREE ITSMPtree2 = [&R] (Hydnellum_geogenium,Boletopsis_leucomelaena,(Antrodia_heteromorpha,(Antrodia_gossypium,((((((Polyporus_brumalis,Lentinus_tigtinus),(Amauroderma_rugosum,Perenniporia_tephropora)),(((Melanoderma_microcarpum,(Melanoderma_bonnisens_28826,Melanoderma_bonnisens_TUFC101524,Melanoderma_bonnisens_TUFC101522)),(Melanoderma_disciforme_Yuan1643,Melanoderma_disciforme_Yuan1675)),(Polyporus_tuberaster,(Picipes_tubaeformis,Picipes_badius)))),(Pseudofavolus_cucullatus,((Polyporus_squamosus,Datroniella_scutellata),(Datronia_mollis,Echinochaete_russiceps)))),(Favolus_brasiliensis,Favolus_emerici)),(Pycnoporus_cinnabarinus,(Lenzites_betulina,Trametes_suaveolens)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr121824] END; BEGIN TREES; TITLE Melanoderma_ITS_MP_ML; LINK TAXA = TaxaForAnalysisStep23227; TREE ITSMPtree1 = [&R] (Hydnellum_geogenium,Boletopsis_leucomelaena,(Antrodia_heteromorpha,(Antrodia_gossypium,((((((Polyporus_brumalis,Lentinus_tigtinus),(Amauroderma_rugosum,Perenniporia_tephropora)),(((Melanoderma_microcarpum,(Melanoderma_bonnisens_28826,Melanoderma_bonnisens_TUFC101524,Melanoderma_bonnisens_TUFC101522)),(Melanoderma_disciforme_Yuan1643,Melanoderma_disciforme_Yuan1675)),(Polyporus_tuberaster,(Picipes_tubaeformis,Picipes_badius)))),(Pseudofavolus_cucullatus,((Polyporus_squamosus,Datroniella_scutellata),(Datronia_mollis,Echinochaete_russiceps)))),(Favolus_brasiliensis,Favolus_emerici)),(Lenzites_betulina,(Pycnoporus_cinnabarinus,Trametes_suaveolens)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr121823] END;