#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 06, 2026; 20:22 GMT TreeBASE (cc) 1994-2008 Study reference: Sandona K., Tobia T.B., Hutchinson M.I., Natvig D.O., & Porras-alfaro A. 2019. Diversity of thermophilic fungi in corn grain. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23897] [ The following blocks are input data for analysis step 24113 ] BEGIN TAXA; TITLE TaxaForAnalysisStep24113; DIMENSIONS NTAX=30; TAXLABELS Circinella_muscae_JN205854 Circinella_sp._JX644553 Corn_isolate_TAFCN20 Corn_isolate_TAFCg8 Corn_isolate_TAFCn11 Corn_isolate_TAFCn2 Corn_isolate_TAFCn35 Dichotomocladium_floridanum_JQ775409 Fennellomyces_linderi_FJ713096 Lichtheimia_corymbifera_FJ719398 Phycomyces_blakesleeanus_AY997071 Phycomyces_blakesleeanus_JN206308 Rhizomucor_miehei_JF412011 Rhizomucor_miehei_JN206322 Rhizomucor_miehei_JX644572 Rhizomucor_pusillus_AB369914 Rhizomucor_pusillus_EF151443 Rhizomucor_pusillus_HQ285701 Rhizomucor_pusillus_HQ285702 Rhizomucor_pusillus_HQ285716 Rhizomucor_pusillus_HQ404243 Rhizomucor_pusillus_HQ404245 Rhizomucor_pusillus_HQ404247 Rhizomucor_pusillus_JN206312 Rhizomucor_pusillus_JQ796883 Rhizomucor_pusillus_JX661046 Rhizomucor_tauricus_JN206310 Thamnostylum_piriforme_JX629062 'Thermomucor indicae-seudaticae JN206302' Uncultured_compost_fungus_AM711501 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M51078] TITLE Mucorales_ITS; LINK TAXA = TaxaForAnalysisStep24113; DIMENSIONS NCHAR=671; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Circinella_muscae_JN205854 ACCGCAAAGGTTCTTCTGAACCAACCTTATGTTTATTAAACT------------CTGAACTTATAACAA---AAGGGTGTTTTGGTCTT----AATTGACTAG----CCTTTTTATTTAATGTGGTCTTGATTGACTACTAAAACAACTTTTAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGATAATTAGTGCGAATTGCAGACTTTGTGAATCATCGAGTTCTTGAACGCACCTTGCACCTAGTGGTTTATTCTACTAGGTACGGTTGTTTCAGTATC---ACAAAAC------TCAACAACCTATTCATTTGTTTGAATACGTGTTGGAGATGAGTCTTT--TGGTC-----------------------TTCTCGTTAAGACTAAATGACTTGAAATCTATTT----------------------ACCAAA--AATCTTGG------ATTTGCCAAGAGACTGGATCGTAATTGGT-TTTAAATC-----------------TGGTCTTGATAATTCGAACTTTTGGTGTAAAA----------CAA{CT}CCAAACCAAAAC------------------------------------------------CGTGATCTGAAATCAACTGAGACTACCCGCTG-AACTTA- Circinella_sp._JX644553 ACCGCAAAGGTTCTTTTGAACCAACTTTATATATATGAAATT------------CTGATTCTATAACAA--AAAGGACGTATTTGGTCTT---AATTGACTTGGTCTCTTTTATACTTAACGTGGTCTTGATTGACTACTAAAACAACTTTTAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGATAATTAGTGCGAATTGCAGACTTTGCGAATCATCGAGTTCTTGAACGCACCTTGCACCTAATGGTTTATTCTATTAGGTACGGTTGTTTCAGTATC---ACAAAAC------TCAACAACCTATTCATTTGTTTGAATACGAGTTGGAGATGAGACTTT--TGGAT---------------------CTACTAGCTTAGGACCAAATGACTTGAAATCTATCT----------------------ACCAAA--AATCTTGG------GTTTGCCAAGAGACTGGATCGTAATTTGGTTTAAAATC-----------------TGGTCTTGATAACTTGAACTTTTGGTATAAAA---------CAAAGTTAAACCAAAAC------------------------------------------------CGTGATCTGAAATCAACTGAGACTACCCGCTG-AACTTA- Corn_isolate_TAFCN20 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAA----------------------------------------------ATAAATTTCAACT--------------------------- Corn_isolate_TAFCg8 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGGTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAA---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGA?CGTAACAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAAATGGGATTACCCGCTG-AACTTA- Corn_isolate_TAFCn11 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATTC------------------------------------------TTTCAACTAG------------------------------ Corn_isolate_TAFCn2 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAATTCTTTCAA-------------------------------------CTAGGAGCGAACTTAGATGGGATACC-------------- Corn_isolate_TAFCn35 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGGTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAA---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAACGTA?CAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Dichotomocladium_floridanum_JQ775409 ATCTCGACTGGTCTC------------TTTGTTCGTTAAATGCTTTGGACTTGAGCAACCCAATATAAA-----TAAGATTGATGTATGATTGAAATAATTCAAACTTGATAGTCTGTAATGGATTGTC---------TAAAAACAACTCTTAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCGTAGCAAAGTGCGATAATTAGTGCGACTTGCATACATTGCGAATCATCGAGTTCTTGAACGCATCTTGCACCTGGAGG-TTCTTCCTCCAGGTATGGTTGTTTCAGTATC--CACAAAAC-------CCCAAACGCGACTTTTAGGAGTCG-------TGGAAATGGGCATCCTAGGGAG-------------------------TATTC-----TCTAATGCCTTAAAACCTAACG----------------------ATCAGTCCGTTGTATT--------TGATGTATAACTTGGTCTCCCA------TTTCAGTCGTTGAGCCTTAGGGCACTTGGGTTTACAACCTTGGGTTTCAACGCGGAAGACTAGGGTCGAGTGCGA--------------------------------------------------------CTTGATCTGAAA--GAATGAG------------------- Fennellomyces_linderi_FJ713096 ACCGCAAAGGTTCTTCTGAACCAACTTTATGTTTATTAAACT------------CTGAACTTATAACAA-----AGGGGTTTTGGTCTT----AATTGACCTA----CCTTTTTATTTAATGTGGTCTTGATTGACTACTAAAACAACTTTTAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGATAATTAGTGCGAATTGCAGACTTTGTGAATCATCGAGTTCTTGAACGCACCTTGCACCTAGTGGTTTATTCTACTAGGTACGGTTGTTTCAGTATC---ACAAAAC------TCAACAACCTATTCATTTGTTTGAATACGTGTTGGAGATGAGTCTTT--TGGTC-----------------------TTCTCGTTAAGACTAAATGACTTGAAATCTATTT----------------------ACCAAA--AATCTTGG------ATTTGCCAAGAGACTGGATCGTAATTGGT-TTTAAATC-----------------TGGTCTTGATAATTCGAACTTTTGGTATAAAA----------CAATCCAAACCAAAAC------------------------------------------------CGTGATCTGAAATCAACTGAGACTACCCGCTG-AACTT-- Lichtheimia_corymbifera_FJ719398 ACCCCAAAGGTTTTTTC-------TACTATGTCTATGAATTG------------------ATGTATGAA--AAAAAAGTTATTTG----------TTAACTTGAAGGCTTCTGTA---AAAAGAGTCTT---------TAAAAACAACTCTTGGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCGTAGCAAAGTGCGATAATTATTGCGACTTGCATTCATAGTGAATCATCGAGTTCTTGAACGCATCTTGCGCCTAGTAG-TCAATCTACTAGGCACAGTTGTTTCAGTATCTGCATCCACC-------AATCAACTTAACCTTTTGTGTTGAGT-----TGGAACTGGGCTTCTAGTTGAT-------------------GGCATTTAGTT---GCTGTCATGGCCTTAAATCAATGTCCTAGGTGTTAGAACATCTAACACCGGATGGAAACTTTAGAGCGCTTTAAGAGCAGCTTGGTTAGTGAG-----TTCAATAATTCCAAGCATTAAGTCTTTTAATGAACTAGCTTTTCTATCTATGGGACACTACTTGGAGAAATCCAAGTAACCTTTAAACTCCAT--------------------------------------TTAGATCTGAAATCAACTGAGACCACCCGCTG-AACTTA- Phycomyces_blakesleeanus_AY997071 ATCCCTATAGG------AAAACAAAATCTTACTGAAGAACTG--------------AATCTAGTTGGAA--AACTAAA---------------AGTTAACATGACC-------------GCAAGGTTAT-----------AAAACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAACTGCGATACTTAATGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCTCACTGG--TATTCCAGTGAGCACGCCTGTTTCAGCATC---ACAAAACAACCACAAAACAATTTGTTTATTCGAATTTGTTT----TGATTATGGATAGATCATGGTA-----------------------TTTATAC---CGTTGAATCATCTTAAGCAAAGCT----------------------TGTAAAAGAATCTTGT-----CGGTTATCAACAGATCAAACTTTA-------TAAAAATCACCTGGCTATGG-----TTGCCGGTGCTAGTTTATCTGGGCAGACATAAGAACGGTTCCCAAGTAAAAAGTAGTTTGGCTCATTTA-------------------------------------TTTAAGCCAAATTTCTTTAATACAA--------------- Phycomyces_blakesleeanus_JN206308 ATCCCTATAGG------AAAACAAAATCTTACTGAAGAACTG--------------AATCTAGTTGGAA--AACTAAA---------------AGTTAACATGACC-------------GCAAGGTTAT-----------AAAACAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAACTGCGATACTTAATGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCTCACTGG--TATTCCAGTGAGCACGCCTGTTTCAGCATC---ACAAAACAACCACAAAACAATTTGTTTATTCGAATTTGTTT----TGATTATGGATAGATCATGGTA-----------------------TTTATAC---CGTTGAATCATCTTAAGCAAAGCT----------------------TGTAAAAGAATCTTGT-----CGGTTATCAACAGATCAAACTTTA-------TAAAAATCACCTGGCTATGG-----TTGCCGGTGCTAGTTTATCTGGGCAGACATAAGAACGGTTCCCAAGTAAAAAGTAGTTTGGCTCATTTATTTAAGCCAAATTTCTTTAATACAAACCATTTTAAAATTGGATCTGAAATCAGGTGGGATTACCCGCTG-AACTTA- Rhizomucor_miehei_JF412011 ATTGCTCCAGATCTCTCTTTCCTTTTTTTTACGTATTGATTTGACTGAACATTTTTG----TTTTAAAATGAAAAAAAGTTTTGAAGCCAATCAATTGGTTCAAGA----------CAAATCAAATTTT-----------GAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCATCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTTTGAAAC-----CCTAAAGATTCAATTTTGTTGTTGAATCTT---TGGATTTGCGGTGCTGATGGGGGGGAGGACAAAGCAAATCTTTTGTGTGTCCCCCGTTCAAGCTACTCGAA---CAGTTTTTGAGTTTTTGGCCTTTTTAGATTGGT--GAACATTC----------TTGAAGGGCTTACTTTGATAT-----CTAAAATT-----------------TTCGAATTTTGGGTTATCATTGCTTTGAGAAAACACAATCTAAAAGCAAAAA------------------------------------------------------CTCTATATAAACTTT------------------------- Rhizomucor_miehei_JN206322 ATTGCTCCAGATCTCTCTTTCCTTTTTTTTACGTATTGATTTGACTGAACATTTTTG----TTTTAAAATGAAAAAAAGTTTTGAAGCCAATCAATTGGTTCAAGA----------CAAATCAAATTTT-----------GAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGAT{CT}TGCAGCCTTTGCGAATCATCGAATTCTCGAACGCATCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTTTGAAAC-----CCTAAAGATTCAATTTTGTTGTTGAATCTT---TGGATTTGCGGTGCTGATGGGGGGGAGGACAAAGCAAATCTTTTGTGTGTCCCCCGTTCAAGCTACTCGAA---CAGTTTTTGAGTTTTTGGCCTTTTTAGATTGGT--GAACATTC----------TTGAAGGGCTTACTTTGATAT-----CTAAAATT-----------------TTCGAATTTTGGGTTATCATTGCTTTGAGAAAACACAATCTAAAAGCAAAAACTCTATATAAACTTTTTTTTTTTTTCATTC------------------------ATGGATCTGAACTTAGACAGGACTACCC------------ Rhizomucor_miehei_JX644572 ATTGCTCCAGATCTCTCTTTCCTTTTTTTTACGTATTGATTTGACTGAACATTTTTG----TTTTAAAATGAAAAAAAGTTTTGAAGCCAATCAATTGGTTCAAGA----------CAAATCAAATTTT-----------GAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCATCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTTTGAAAC-----CCTAAAGATTCAATTTTGTTGTTGAATCTT---TGGATTTGCGGTGCTGATGGGGGGGAGGACAAAGCAAATCTTTTGTGTGTCCCCCGTTCAAGCTACTCGAA---CAGTTTTTGAGTTTTTGGCCTTTTTAGATTGGT--GAACATTC----------TTGAAGGGCTTACTTTGATAT-----CTAAAATT-----------------TTCGAATTTTGGGTTATCATTGCTTTGAGAAAACACAATCTAAAAGCAAAAA------------------------------------------------------CTCTATATAAACTTTTTT-----------------TTTT- Rhizomucor_pusillus_AB369914 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGCTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_EF151443 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGCTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_HQ285701 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_HQ285702 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_HQ285716 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGCTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_HQ404243 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_HQ404245 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_HQ404247 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_JN206312 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGCTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCC------------ Rhizomucor_pusillus_JQ796883 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGTTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- Rhizomucor_pusillus_JX661046 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGCTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTGAAACTTA- Rhizomucor_tauricus_JN206310 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGATTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGCTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCC------------ Thamnostylum_piriforme_JX629062 GCTCCAATGGTATTTCGGTACCAAACTTTTATATATACTATT-------------TTGTCAGATATGAA--AACTGAGGTTTTTGGTCTT---AATTGACT------ATCCTCTTTTAACTGTAGTTTT-----ACTACAAAAACAACTTTTAGCAATGGATCTCTTGGTTTCCGCATCGATGAAGAGCGTAGCAAATTGCGATAACTAGTGCGAATTGCAGACTTTGTGAATCATCGAGTTCTTGAACGCATCTTGCACCTAGTGGTTTATTCTACTAGGTACGGTTGCTTCAGTATC---ACGAAAC------TCACCAACTCAACCTTTTGGGGTTGAAGA---TGGAGCTGGACTTGCTAGGATC---------------------GTTTTTTTTACGGTCTTGGTAGTCTGAAATAGAGTAT---------------------ACCAAA--TGTCTTTTTGACCTTGTTTCAAAGAGATTGGACTATAAAGTGTACCTAGGTTCGGTATGATT-------TACCTAGTGTCGTCTGATCTTT-------------------GGAGGTTAA--------------------------------------------------------TGTGATTGGGATTTTGGTGG-------------AGGTTA- 'Thermomucor indicae-seudaticae JN206302' GACGATCCGGGTGTTTTATCCACATATTTATTATTATTATTC---------------AACCCATCGGGA--AACGAAGGTGGTGGTT-------GTTGATTT----TTCTCCCTATTGAAAAGGG-------GAAGAATAAAAACAACTTTCAGCAATGGATCTCTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGATAATTAATGCGAATTGCA--TTTCGTGAGTCATCGAGTTCTCGAACGCACCTTGCACCTTTGGG--TAATCCGA-AGGTACGTCTGTTTCAGAATCAGACAGAAAC----CGCACACAACTCAGGGTTGTGGATTT--------GGGAGAAAAGTTTGCCTCGGGT---------------------------------CAGCTTGTCTCCTTAAAAATAGTT----------------------ACCCAA--GGTCGGAG----------GTGGGGGCTCTGTTCCGGTAG-----TTCCTATC-----------------TTTTTACTGTGAGTAGGGCTCTT---ACGCGA---------CCGTGTCAAAC------------------------------------------------------CCTGATCTGAAATCAGACGAGACTACCCGCTG------A- Uncultured_compost_fungus_AM711501 ATTGCTCCAGATCTCTCGACCTTTTATTTTACATATTTGATTGACTGTTG-----------TTTAACAA--ATTGAAAGTTTTGGATCAG---AAATGATTCAAGA-----------CGATAAAATTTC-----------AAAACAACTTTAAGCAATGGATCACTTGGTTCTCGCATCGATGAAGAGCGTAGCAAATTGCGAAAAGTAATGCGATCTGCAGCCTTTGCGAATCATCGAATTCTCGAACGCACCTTGCACCCTTTGG-TTCATCCATTGGGTACGTCTAGTTCAGTATCTTTATTAACC-----CCTAAAGGTTTATTTTTTGATAAATCTT-----TGGTTTTGCGGTGCTGATGGAT----------------------TTTCATCC---GTTCAAGCTACCCGAA---CAATTTGTATGTTGTTG----------ACCCTT--GATATTTC----------CTTGAGGGCTTGCATTGGTA------TCTAATTTT----------------TTACCAGTGTGCTTCGAGATGATCAAGTATAA-----------AGGTCAATCAACCACAAATAAATTTC------------------------AACT---------ATGGATCTGAACTTAGATGGGATTACCCGCTG-AACTTA- ; END; [ The following blocks are output data for analysis step 24113 ] BEGIN TREES; TITLE Mucorales; LINK TAXA = TaxaForAnalysisStep24113; TREE Imported_tree_1 = [&R] ((Phycomyces_blakesleeanus_JN206308:1.0E-8,Phycomyces_blakesleeanus_AY997071:0.03305248):0.238454775,(((Circinella_sp._JX644553:0.04734005,(Fennellomyces_linderi_FJ713096:0.00706194,Circinella_muscae_JN205854:0.00786334):0.05886198):0.13424828,(Thamnostylum_piriforme_JX629062:0.32471505,(Lichtheimia_corymbifera_FJ719398:0.33798041,Dichotomocladium_floridanum_JQ775409:0.39876397):0.12366231):0.05621481):0.10200321,('Thermomucor indicae-seudaticae JN206302':0.38892951,((Rhizomucor_miehei_JN206322:3.5E-7,(Rhizomucor_miehei_JF412011:1.0E-8,Rhizomucor_miehei_JX644572:1.2E-7):0.01855799):0.24019806,((Rhizomucor_tauricus_JN206310:8.0E-8,Rhizomucor_pusillus_JX661046:1.0E-8):8.0E-8,(Rhizomucor_pusillus_JN206312:1.0E-7,(Rhizomucor_pusillus_HQ285716:7.0E-8,(Uncultured_compost_fungus_AM711501:0.00211164,(Rhizomucor_pusillus_AB369914:1.0E-8,(Rhizomucor_pusillus_EF151443:1.0E-8,((Corn_isolate_TAFCn35:1.4E-7,Corn_isolate_TAFCg8:0.00264865):0.00797733,(Rhizomucor_pusillus_HQ404243:1.0E-8,(Rhizomucor_pusillus_HQ404247:1.0E-8,((Rhizomucor_pusillus_HQ285702:1.0E-8,Rhizomucor_pusillus_HQ285701:1.0E-8):1.0E-8,((Rhizomucor_pusillus_JQ796883:1.0E-8,Rhizomucor_pusillus_HQ404245:4.0E-8):4.0E-8,(Corn_isolate_TAFCN20:0.00697933,(Corn_isolate_TAFCn11:0.01249273,Corn_isolate_TAFCn2:0.02138374):0.01000497):0.00529812):1.1E-7):1.8E-7):2.2E-7):2.2E-7):0.00211155):2.3E-7):2.5E-7):1.9E-7):2.5E-7):1.0E-7):0.10519215):0.35068647):0.0700213):0.238454775); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr118950] END;