#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 21:16 GMT TreeBASE (cc) 1994-2008 Study reference: Munshi-south J., & Wilkinson G. 2005. Diet influences life span in parrots (Order: Psittaciformes). Auk, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1299] [ The following blocks are input data for analysis step 2413 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2413; DIMENSIONS NTAX=56; TAXLABELS Chalcopsitta_atra Chalcopsitta_cardinalis Chalcopsitta_duivenbodei Chalcopsitta_scintillata Charmosyna_amabilis Charmosyna_diadema Charmosyna_josefinae Charmosyna_margarethae Charmosyna_meeki Charmosyna_multistriata Charmosyna_palmarum Charmosyna_papou Charmosyna_placentis Charmosyna_pulchella Charmosyna_rubrigularis Charmosyna_rubronotata Charmosyna_toxopei Charmosyna_wilhelminae Eos_bornea Eos_cyanogenia Eos_histrio Eos_reticulata Eos_semilarvata Eos_squamata Glossopsitta_concinna Glossopsitta_porphyrocephala Glossopsitta_pusilla Lorius_albidinuchus Lorius_chlorocercus Lorius_domicella Lorius_garrulus Lorius_hypoinochrous Lorius_lory Neopsittacus_musschenbroekii Neopsittacus_pullicauda Oreopsittacus_arfaki Outgroup_to_Loriidae Phigys_solitarius Pseudeos_fuscata Psitteuteles_flavoviridis Psitteuteles_goldiei Psitteuteles_iris Psitteuteles_versicolor Trichoglossus_chlorolepidotus Trichoglossus_euteles Trichoglossus_flavoviridis Trichoglossus_haematodus Trichoglossus_johnstoniae Trichoglossus_ornatus Trichoglossus_rubiginosus Trichoglossus_rubritorquis Vini_australis Vini_kuhlii Vini_peruviana Vini_stepheni Vini_ultramarina ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2802] TITLE Loriidae; LINK TAXA = TaxaForAnalysisStep2413; DIMENSIONS NCHAR=36; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 ] [ . . . ] Chalcopsitta_atra 0000110101100000000000????1000000001 Chalcopsitta_cardinalis ??????????100000000000????1000000001 Chalcopsitta_duivenbodei 0000110101100000000000????1000000001 Chalcopsitta_scintillata 0000110101100000000000????1000000001 Charmosyna_amabilis ??????????010000000000????0100000001 Charmosyna_diadema ??????????010000000000????0100000001 Charmosyna_josefinae ??????????010000000000????0100000001 Charmosyna_margarethae ??????????010000000000????0100000001 Charmosyna_meeki ??????????010000000000????0100000001 Charmosyna_multistriata ??????????010000000000????0100000001 Charmosyna_palmarum ??????????010000000000????0100000001 Charmosyna_papou ??????????01000000000000000100000001 Charmosyna_placentis ??????????010000000000????0100000001 Charmosyna_pulchella 0000001101010000000000????0100000001 Charmosyna_rubrigularis ??????????010000000000????0100000001 Charmosyna_rubronotata ??????????010000000000????0100000001 Charmosyna_toxopei ??????????010000000000????0100000001 Charmosyna_wilhelminae ??????????010000000000????0100000001 Eos_bornea 0100010101001000000000????0010000001 Eos_cyanogenia 0100010101001000000000????0010000001 Eos_histrio ??????????001000000000????0010000001 Eos_reticulata 0100010101001000000000????0010000001 Eos_semilarvata ??????????001000000000????0010000001 Eos_squamata ??????????001000000000????0010000001 Glossopsitta_concinna 000000110100010000000010100001000001 Glossopsitta_porphyrocephala ??????????000100000000????0001000001 Glossopsitta_pusilla ??????????000100000000????0001000001 Lorius_albidinuchus ??????????000010000000????0000100001 Lorius_chlorocercus ??????????000010000000????0000100001 Lorius_domicella ??????????000010000000????0000100001 Lorius_garrulus 0010010101000010000000????0000100001 Lorius_hypoinochrous ??????????000010000000????0000100001 Lorius_lory 001001010100001000000000010000100001 Neopsittacus_musschenbroekii 000000001100000100000001100000010001 Neopsittacus_pullicauda ??????????00000100000001100000010001 Oreopsittacus_arfaki 000000001100000000000000010000000001 Outgroup_to_Loriidae 000000000000000000000000000000000000 Phigys_solitarius 0000001101000000000000????0000000001 Pseudeos_fuscata 0000010101000000000000????0000000001 Psitteuteles_flavoviridis 0001010101000000000100????0000001001 Psitteuteles_goldiei ??????????000000000100????0000001001 Psitteuteles_iris 0001010101000000000100????0000001001 Psitteuteles_versicolor ??????????00000000010010100000001001 Trichoglossus_chlorolepidotus ??????????000000000010????0000000101 Trichoglossus_euteles 1000010101000000000010????0000000101 Trichoglossus_flavoviridis ??????????000000000010????0000000101 Trichoglossus_haematodus 100001010100000000001010100000000101 Trichoglossus_johnstoniae ??????????000000000010????0000000101 Trichoglossus_ornatus 1000010101000000000010????0000000101 Trichoglossus_rubiginosus ??????????000000000010????0000000101 Trichoglossus_rubritorquis ??????????000000000010????0000000101 Vini_australis 0000001101000000000001????0000000011 Vini_kuhlii ??????????000000000001????0000000011 Vini_peruviana ??????????000000000001????0000000011 Vini_stepheni ??????????000000000001????0000000011 Vini_ultramarina ??????????000000000001????0000000011 ; END; [ The following blocks are output data for analysis step 2413 ] BEGIN TREES; TITLE Tb7188; LINK TAXA = TaxaForAnalysisStep2413; TREE Loriidae = [&R] ((((Chalcopsitta_atra,Chalcopsitta_cardinalis,Chalcopsitta_duivenbodei,Chalcopsitta_scintillata),(Charmosyna_amabilis,Charmosyna_diadema,Charmosyna_josefinae,Charmosyna_margarethae,Charmosyna_meeki,Charmosyna_multistriata,Charmosyna_palmarum,Charmosyna_papou,Charmosyna_placentis,Charmosyna_pulchella,Charmosyna_rubrigularis,Charmosyna_rubronotata,Charmosyna_toxopei,Charmosyna_wilhelminae),(Eos_bornea,Eos_cyanogenia,Eos_histrio,Eos_reticulata,Eos_semilarvata,Eos_squamata),(Glossopsitta_concinna,Glossopsitta_porphyrocephala,Glossopsitta_pusilla),(Lorius_albidinuchus,Lorius_chlorocercus,Lorius_domicella,Lorius_garrulus,Lorius_hypoinochrous,Lorius_lory),Phigys_solitarius,Pseudeos_fuscata,(Psitteuteles_flavoviridis,Psitteuteles_goldiei,Psitteuteles_iris,Psitteuteles_versicolor),(Trichoglossus_chlorolepidotus,Trichoglossus_euteles,Trichoglossus_flavoviridis,Trichoglossus_haematodus,Trichoglossus_johnstoniae,Trichoglossus_ornatus,Trichoglossus_rubiginosus,Trichoglossus_rubritorquis),(Vini_australis,Vini_kuhlii,Vini_peruviana,Vini_stepheni,Vini_ultramarina)),((Neopsittacus_musschenbroekii,Neopsittacus_pullicauda),Oreopsittacus_arfaki)),Outgroup_to_Loriidae); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4445] END;