#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on December 27, 2025; 12:05 GMT TreeBASE (cc) 1994-2008 Study reference: Wissemann V., & Ritz C. 2004. The genus Rosa (Rosoideae, Rosaceae) revisited: molecular analysis of nrITS-1 and atpB-rbcL intergenic spacer (IGS) versus conventional taxonomy. Biological Journal of the Linnean Society, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1301] [ The following blocks are input data for analysis step 2417 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2417; DIMENSIONS NTAX=68; TAXLABELS Rosa_abietina_C9_1 Rosa_abietina_C9_2 Rosa_abietina_C9_3 Rosa_altaica Rosa_arkansana_I Rosa_arkansana_II Rosa_banksiae Rosa_beggeriana Rosa_blanda Rosa_bracteata Rosa_canina Rosa_carolina Rosa_chinensis Rosa_columnifera Rosa_dumalis Rosa_ecae Rosa_foetida Rosa_gallica Rosa_helenae Rosa_hugonis Rosa_jundzillii_VW356_1 Rosa_jundzillii_VW356_2 Rosa_laevigata Rosa_laxa Rosa_majalis Rosa_micrantha_C2_3 Rosa_micrantha_C2_4 Rosa_micrantha_C2_6 Rosa_mollis Rosa_montana_C8_1 Rosa_montana_C8_2 Rosa_multibracteata Rosa_multiflora Rosa_nitida Rosa_odorata Rosa_palustris Rosa_persica Rosa_primula Rosa_pseudoscabriuscula_C1_1 Rosa_pseudoscabriuscula_C1_2 Rosa_pseudoscabriuscula_C1_3 Rosa_roxburghii Rosa_rubiginosa Rosa_rugosa Rosa_sericea Rosa_sertata Rosa_sherardii Rosa_sicula_VW161_1 Rosa_sicula_VW161_2 Rosa_sicula_VW161_3 Rosa_sicula_VW161_6 Rosa_spinosissima Rosa_stellata Rosa_stylosa Rosa_subcanina_VW141_1 Rosa_subcanina_VW141_2 Rosa_suffulta Rosa_tomentella_VW146_1 Rosa_tomentosa_VW142_1 Rosa_tomentosa_VW142_2 Rosa_virginiana Rosa_wichurana Rosa_willmottiae Rosa_woodsii Rubus_caesius Rubus_idaeus Rubus_saxatilis Rubus_ulmifolius ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2714] TITLE 'nrITS-1'; LINK TAXA = TaxaForAnalysisStep2417; DIMENSIONS NCHAR=264; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Rosa_abietina_C9_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTNTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_abietina_C9_2 TCGAAACCTGCCTCGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTCTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_abietina_C9_3 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTNTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGGATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_altaica TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_arkansana_I TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_arkansana_II TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_banksiae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-{CG}GCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGTGCTTGACCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCTTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_beggeriana TCGAAACCTGCCTAGCAGAACGACCCGAG-ACATGTTTCAA-CGCTTGGGGG-CGGA{CG}{CG}GTGTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_blanda TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGG-TCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_bracteata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTC{AC}CC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_canina TCGAAACCTG{CG}NTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_carolina TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGNTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCACCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTGTTCAATATGTC Rosa_chinensis TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_columnifera TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_dumalis TCGAAACC{CT}GCNTAGCAGAACGACCCGAGAACATGTNTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTTTG-GCGT{GT}TGGCACTCCGG{GT}GCTTTCGC{CT}T{AG}ACCGACCCTCCCAG{CG}{CG}GT{AC}C---TGAACACCGGCGTGAATGGCGCCAAGGAACT{GT}GAATGAAAGA-{CG}CGTCCCCCC-GCCGTCCCGGAGACG-CTGCTCGGTGCGGGGTGGTTTCGTCGTCTTCAATATGTC Rosa_ecae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-{CT}GGAGGGTCTTGCGGCTCTGT{GT}CCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_foetida TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-{CT}GGAGGGTCTTGCGGCTCTGTTCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_gallica TCGAAACCTGNTTAGCAGAACGACCCGAGAACATGTTTCAA-GGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCAGGCGTAC---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_helenae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGTAGGGTCTTGCGGCTCTGTGC{AC}CCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGTTTGCGCTTGATCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCCCGC-GTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_hugonis TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_jundzillii_VW356_1 TCGAAACCTGNNTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGTGCTTGACCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCTTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_jundzillii_VW356_2 TCGAAACCTGNNTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAGCACCGGCGTGAACTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_laevigata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTCGGGGG-CGTAGGGTCTTGCGGCTCTGTGCCCCCTCATCCTAGGAGGCAAGT{ACG}TCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_laxa TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_majalis TCGAAACCTGCCTAGCAGAACGACCCGAGNACATGTTTCAA-CGCTTGGGGG-CGGAGGNTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_micrantha_C2_3 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAT---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGTATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_micrantha_C2_4 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_micrantha_C2_6 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAT---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_mollis TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_montana_C8_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCGA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTNTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAT---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_montana_C8_2 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_multibracteata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAATCGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTCAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCNGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_multiflora TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_nitida TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGC-GTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_odorata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTC{CT}TG{CT}GGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-G{CT}GTGTTGCATTTCGGTGCTTTCGCTTGATTGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_palustris TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_persica TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTCTCTT-GCGGGTTGCATTTCGGTGCTTCCCCTTGACCGACCCTCCCGGGCGTAC---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_primula TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGTGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_pseudoscabriuscula_C1_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_pseudoscabriuscula_C1_2 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_pseudoscabriuscula_C1_3 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGCCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_roxburghii TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTNTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGATCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_rubiginosa TCGAAAC{CT}TG{CG}{CGT}TAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTCGCACTTCGGTGCTTTCGCTTGACCGACCCCCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTCCCCCC-GCCGTCCCGGAGACGCGCGCCCG-CGCGGG-CGGTTTCGTCGTCTTCAATATGTC Rosa_rugosa TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sericea TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTCGGGGG-CGTAGGGTCTTGCGGCTCTGTGCCCCCTCATCCTAGGAGGCAAGT{CG}TCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sertata TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGNAGGTTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCNAGTCTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCACCCGCCNNCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sherardii TCGAAACCTG{CGT}{CGT}TAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTTTGCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sicula_VW161_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sicula_VW161_2 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sicula_VW161_3 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTAGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTTGTCGTCTTCAATATGTC Rosa_sicula_VW161_6 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTNTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTCCGTCGTCTTCAATATGTC Rosa_spinosissima TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTG{CT}GCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTT{GT}CGCTTGACCGACCCTCC{CT}{AT}GGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_stellata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCCAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTCCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCACG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_stylosa TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_subcanina_VW141_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGACCTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_subcanina_VW141_2 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCCTCTTCAATATGTC Rosa_suffulta TCGAAACCTGCCTAGCAGAACGACCCGAG{ACT}ACATGTTTCAA-CGCTTGGGGG-CG-AGG-TCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTCTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_tomentella_VW146_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_tomentosa_VW142_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTNTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_tomentosa_VW142_2 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_virginiana TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTGTTCAATATGTC Rosa_wichurana TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCC{AC}CCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_willmottiae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-{CT}GCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_woodsii TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGTGCTTGACCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCTTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rubus_caesius TCGAAACCTGCCCAGCAGAACGACCCGAG-ACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTTCGGCTCCTCGTCCC-TTTTCTCGGGAGGCAATCGTCTT-GTGCGTTGCATCTCGATGCTCGCACTTGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGCCCCGGAAACG-GTGTGCG-TGCGGT-GGGTTACGTCATCTTCAATATGTC Rubus_idaeus TCGAAACCTGCCCAGCAGAACGACCCGAG-ACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTACAGCTCCTCGTCCC-TTTTCTCGGGAGGCAATCGTCTT-GTGTGTTGCATCTCGATGCTCGCACTAGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGG-ACTTGAATGAAAGA-GCGTTCCCCC-GTCGTCCCGGAAACG-GTGTGCG-TGCGGT-TGGTTACGTCATCTTCAATATGTC Rubus_saxatilis TCGAAACCTGCCCAGCAGAACGACCCGAGTACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTACANCTCCTCGTCCC-TTTTCTCGGGAGGCAATCGTCTT-GTGTGTTGCATCTCGATGCTCGCACTAGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GTCGTCCCGGAAACG-GTGTGCG-TACGGT-TGGTTACGTCATCTTCAATATGTC Rubus_ulmifolius TCGAAACCTGCCCAGCAGAACGACCCGAGTACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTTCGGCTCCTCGTCCC-TTTTCCCGGGAGGCAATCGTCTT-GTGTGTTGCATCTCGATGCTCGTACTTGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGGATCTTGAATGAAAGAAGCGTTCCCCC-GTCGCCCCGGAAACG-GTGTGCG-TGCGGT-AGGTTACGTCATCTTCAATATGTC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'nrITS-1') = N: 1-264; CODONPOSSET CodonPositions (CHARACTERS = 'nrITS-1') = N: 1-264; END; [ The following blocks are output data for analysis step 2417 ] BEGIN TREES; TITLE Tb7192; LINK TAXA = TaxaForAnalysisStep2417; TREE Fig._1 = [&R] (((((Rosa_persica,Rosa_stellata),((Rosa_laevigata,Rosa_sericea),(Rosa_primula,(Rosa_ecae,Rosa_foetida)))),((Rosa_helenae,(((Rosa_sherardii,((Rosa_columnifera,Rosa_abietina_C9_1),((Rosa_abietina_C9_3,(Rosa_sicula_VW161_6,(Rosa_abietina_C9_2,((Rosa_canina,Rosa_pseudoscabriuscula_C1_1),(Rosa_jundzillii_VW356_2,Rosa_dumalis))))),(Rosa_sicula_VW161_2,Rosa_tomentosa_VW142_1),((Rosa_stylosa,(Rosa_micrantha_C2_3,(Rosa_micrantha_C2_6,Rosa_montana_C8_1))),(Rosa_tomentella_VW146_1,Rosa_mollis)),((Rosa_pseudoscabriuscula_C1_3,Rosa_sicula_VW161_3),(Rosa_rubiginosa,Rosa_montana_C8_2)),((Rosa_micrantha_C2_4,Rosa_subcanina_VW141_1),((Rosa_pseudoscabriuscula_C1_2,Rosa_subcanina_VW141_2),(Rosa_sicula_VW161_1,Rosa_tomentosa_VW142_2)))))),((Rosa_multiflora,Rosa_chinensis),(Rosa_wichurana,Rosa_odorata))),(Rosa_altaica,(Rosa_roxburghii,Rosa_suffulta)))),(Rosa_gallica,(Rosa_spinosissima,(Rosa_woodsii,(Rosa_banksiae,Rosa_jundzillii_VW356_1)))))),((Rosa_laxa,Rosa_hugonis),((((Rosa_arkansana_I,(Rosa_virginiana,(Rosa_carolina,Rosa_sertata))),((Rosa_blanda,Rosa_rugosa),((Rosa_nitida,Rosa_arkansana_II),(Rosa_bracteata,Rosa_palustris)))),(Rosa_beggeriana,Rosa_majalis)),(Rosa_willmottiae,Rosa_multibracteata)))),((Rubus_idaeus,Rubus_saxatilis),(Rubus_ulmifolius,Rubus_caesius))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2039] END;