#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 13:47 GMT TreeBASE (cc) 1994-2008 Study reference: Crous P.W., Wingfield M.J., Burgess T.I., Hardy G., Barber P., Alvarado P., Barnes C.W., Buchanan P., Heykoop M., Moreno G., Thangavel R., Van der spuy S., Barili A., Barrett S., Cacciola S.O., Cano-lira J.F., Crane C., Decock C., Gibertoni T.B., Guarro J., Guevara-suarez M., Hubka V., Kolařík M., Lira C.S., Ordoñez M.E., Padamsee M., Ryvarden L., Soares A.M., Stchigel A.M., Sutton D., Vizzini A., Weir B.S., Acharya K., Aloi F., Baseia I.G., Blanchette R.A., Bordallo J.J., Bratek Z., Butler T., Cano-canals J., Carlavilla J.R., Chander J., Cheewangkoon R., Cruz R.H., Da silva M., Dutta A.K., Ercole E., Escobio V., Esteve-raventós F., Flores J.A., Gené J., Góis J.S., Haines L., Held B.W., Jung M.H., Hosaka K., Jung T., Jurjević Ž., Kautman V., Kautmanova I., Kiyashko A.A., Kozanek M., Kubátová A., Lafourcade M., La spada F., Latha K., Madrid H., Malysheva E., Manimohan P., Manjón J., Martín M.P., Mata M., Merényi Z., Morte A., Nagy I., Normand A., Paloi S., Pattison N., Pawłowska J.Z., Pereira O.L., Petterson M.E., Picillo B., Raj K., Roberts A., Rodríguez A., Rodríguez-campo F.J., Romański M., Ruszkiewicz-michalska M., Scanu B., Schena L., Semelbauer M., Sharma R., Shouche Y., Silva V., Staniaszek-kik M., Stielow B., Tapia C., Taylor P.W., Toome-heller M., Vabeikhokhei J.M., Van diepeningen A.D., Van hoa N., Tri M.V., Wiederhold N.P., Wrzosek M., Zothanzama J., & Groenewald J.Z. 2017. Fungal Planet description sheets: 558-624. Persoonia, 38: 240-384. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20946] [ The following blocks are input data for analysis step 24174 ] BEGIN TAXA; TITLE TaxaForAnalysisStep24174; DIMENSIONS NTAX=26; TAXLABELS Diaporthe_alleghaniensis_KC343249.1 Harknessia_australiensis_JQ706170.1 Harknessia_australiensis_JQ706171.1 Harknessia_banksiae_CPC_29002 Harknessia_banksiae_CPC_29443 'Harknessia banksiae-repens CPC 28874' 'Harknessia banksiae-repens CPC 29006' Harknessia_banksiigena_CPC_28232 Harknessia_cf._eucalyptorum_JQ706176.1 Harknessia_cf._eucalyptorum_JQ706178.1 Harknessia_communis_CPC_29028 Harknessia_communis_CPC_29038 Harknessia_communis_CPC_29468 Harknessia_communis_CPC_29470 Harknessia_ellipsoidea_JQ706173.1 Harknessia_ellipsoidea_JQ706174.1 Harknessia_eucalyptorum_AY720809.1 Harknessia_eucalyptorum_AY720810.1 Harknessia_fusiformis_AY720784.1 Harknessia_fusiformis_JQ706179.1 Harknessia_karwarrae_AY720811.1 Harknessia_malayensis_CPC_28752 Harknessia_pellitae_CPC_27606 Harknessia_platyphyllae_CPC_28862 Harknessia_ravenstreetina_JQ706197.1 Harknessia_ravenstreetina_JQ706198.1 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M48814] TITLE Harknessia_calmodulin_species_alignment; LINK TAXA = TaxaForAnalysisStep24174; DIMENSIONS NCHAR=760; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Diaporthe_alleghaniensis_KC343249.1 ---------------CTTCTCCCTCTTTGTAAGTCATCTCCAGCCGGCAGACACGAGCTCCCCGCCCTCCTCTG---CTGGTGCGCATGATGCTAACGGACCGTTTTCGGCTTGTAGGATAAGGATGGCGATGGTTAGTGCGGCCGCCTCTTTACTCCCTCCCACCTACGCACGCG-TCATGTTCGATCCGCCGCGACAGCCTGCGCG-----TGCATAATTTCCAACCAAGCGAT-----------TATCACATCTATCACGAGTATCATGCTGAGATATGGCGTGTAGGGCAAATCACCACCAAGGAGCTCGGCACGGTCATGCGATCCCTGGGTCAGAACCCGTCCGAGTCTGAGTTGCAAGATATGATTAACGAGGTCGACGCCGACAACAATGGCACCATTGACTTCCCTGGTACGTCCAGATGCTCGCGCTCTGTGGGGG----GGGGGCTGGTGTCGCCCCTCTGCCGCA-GCCTCGTAACCACGTACTGACGCGTACCAACCAGAGTTCCTGACCATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_australiensis_JQ706170.1 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCCGCTGTGCCTTGGGCGCGTTCGCTAATGGAGCTTCTTTCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCACTCCCCCGCCACGCATGCTTGATAA-CCCCATGCCATC----CCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGAACGTACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGATGCCGACAACAACGGCACCATCGACTTCCCTGGTACGT-AGAGACCACGTGGTGTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGGGACTA-------------------CAGAGTTTCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGACACGTCCTTCCCGATAAGGGTTTCCGTGCCGAGAAAGTGGTTCAGGAGCTGACGATAAGACCAGGTCTTTGACCGTGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGATCC- Harknessia_australiensis_JQ706171.1 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCCGCTGTGCCTTGGGCGCGTTCGCTAATGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCACTCCCCCGCCACGCATGCTTGATAA-CCCCATGCCATC----CCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGAACGTACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGT-AGAGACCACGTGGTGTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGCGACTA-------------------CAGAGTTTCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGACGCGTCCTTCCCGATAAGGGTTTCCGTGCCGAGAAAGTGGTTCAGGAGCTGACAATAAGACCAGGTCTTTGACCGTGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGATC-- Harknessia_banksiae_CPC_29002 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAACCCTTGTCTGTGCCTTGGGCGCGTTCGCTAACAGAGCTTCTTCCCAACACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATACTTGATAACCCCCATCCAATC----GCAACTG-TTGCGCAACCGATGCTGCAGGGCCACACGCGCGACCCTTACACCATCGTCGGACGTACGAAAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTGTCTAGCGACCCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_banksiae_CPC_29443 ------------GGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAACCCTTGTCTGTGCCTTGGGCGCGTTCGCTAACAGAGCTTCTTCCCAACACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATACTTGATAACCCCCATCCAATC----GCAACTG-TTGCGCAACCGATGCTGCAGGGCCACACGCGCGACCCTTACACCATCGTCGGACGTACGAAAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTGTCTAGCGACCCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCTCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGATACCTCCTTCCCGATAAGGGTTTCCGTAGCGAGAAAGTCGTTCAGGAGCTGACGAAGAGACCAGGTCTTTGACCGTGAC-------------------------------------------------------------------------------------------- 'Harknessia banksiae-repens CPC 28874' TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAACCCTTGGCTGTGCCATGGGCGCGTTCGCTAACAGAGCTCCTTCCCAACACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCCATCCAATC----GCAACTG-TTGCGCAACCGATGCTGCAGGGCCACACGCGCGATCCCTACACCATCGTCGGACGTACG-AAGACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACATGGTGTCTAGCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Harknessia banksiae-repens CPC 29006' TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAACCCTTGGCTGTGCCATGGGCGCGTTCGCTAACAGAGCTCCTTCCCAACACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCCATCCAATC----GCAACTG-TTGCGCAACCGATGCTGCAGGGCCACACGCGCGATCCCTACACCATCGTCGGACGTACG-AAGACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACATGGTGTCTAGCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Harknessia_banksiigena_CPC_28232 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAACCCTTGTCTGTGCCTTGGGCGCGTTCGCTAACAGAGCTTCTTCCCAACACCAGGACAAGGATGGCGATGGTGAG--------CCTCT-TCCCCCGCCACGCATGCTTGATAA-CCCCATCCAATC----GCAACTG-TTGCGCAACCGATGCTGCAGGGCCACACGCGCGATCCCTACACCATCGTCGGACGTACG-AAAACAAGAAGCTAAGATA-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTGTCTAGCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACCCGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Harknessia_cf._eucalyptorum_JQ706176.1 ---------GGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAGCCCTCGTCTGTGCCTGGGGCGCGTTCGCTAACGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCCTGATAA-CCCCATCCCATC----GCAACTG-TCGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTTGGACGTACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTGTCTAGCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACAATGATGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_cf._eucalyptorum_JQ706178.1 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAGCCCTCGTCTGTGCCTGGGGCGCGTTCGCTAACGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCCTGATAA-CCCCATCCCATC----GCAACTG-TCGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTTGGACGTACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTGTCTAGCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGACACGTCCTTCCCGATAAGGGTTTCCGAGGCGAGAAAGTGGTTCAGGAGCTGACGATAAGACCAGGTCTTTGACCGCGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCTATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGAT--- Harknessia_communis_CPC_29028 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCGTCTGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAACTACAGGACAAGGATGGCGATGGTGAG--------CCTC--TCCCCCGCCACGCATGCTTGATAA-CCCCATCCTATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGAT-CCTACACCATCGTCGGACGTACG-AAAGCAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCTGAGTCTGAGCTACAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTTTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGCGACTA-------------------CAGAGTTTCTTACCATGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_communis_CPC_29038 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCGTCTGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAACTACAGGACAAGGATGGCGATGGTGAG--------CCTC--TCCCCCGCCACGCATGCTTGATAA-CCCCATCCTATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGAT-CCTACACCATCGTCGGACGTACG-AAAGCAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCTGAGTCTGAGCTACAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTTTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGCGACTA-------------------CAGAGTTTCTTACCATGATGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Harknessia_communis_CPC_29468 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCGTCTGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAACTACAGGACAAGGATGGCGATGGTGAG--------CCTC--TCCCCCGCCACGCATGCTTGATAA-CCCCATCCTATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGAT-CCTACACCATCGTCGGACGTACG-AAAGCAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCTGAGTCTGAGCTACAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTTTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGCGACTA-------------------CAGAGTTTCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATTCGCGAAGCCTTCAAGGTGCGACACGTCCTTTCCGATAAGGGTTTCCGTGGCGAGAAAGTGGTTCAGGTGCTGACGATAAGACCAGGTCTTTGACCGTGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGATCC- Harknessia_communis_CPC_29470 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCGTCTGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAACTACAGGACAAGGATGGCGATGGTGAG--------CCTC--TCCCCCGCCACGCATGCTTGATAA-CCCCATCCTATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGAT-CCTACACCATCGTCGGACGTACG-AAAGCAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCTGAGTCTGAGCTACAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTTTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGCGACTA-------------------CAGAGTTTCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATTCGCGAAGCCTTCAAGGTGCGACACGTCCTTTCCGATAAGGGTTTCCGTGGCGAGAAAGTGGTTCAGGTGCTGACGATAAGACCAGGTCTTTGACCGTGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGATCCG Harknessia_ellipsoidea_JQ706173.1 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCCGATGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCTCCCGCCACGCATGCTTGATAA-CCCCATCCCGTC----GCAACTG-TTGCGCAACCGATGCTGCAAAGCCACACGCGCGATTCCTACACCATCGTCGGACGTACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAG-GACCACGTGGTGTTTAGCGACTCCGAGGCCTGTCGCTGCCTTTCACTAACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGAAACGTCCTTCCCGATAAGGATTTCCGCGGCGAGAAAGTTGCTTAGGAGCTGACGATAATACCAGGTCTTTGACCGTGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTAGATGAGATGATCCG Harknessia_ellipsoidea_JQ706174.1 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCCGATGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCTCCCGCCACGCATGCTTGATAA-CCCCATCCCGTC----GCAACTG-TTGCGCAACCGATGCTGCAAAGCCACACGCGCGATTCCTACACCATCGTCGGACGTACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAG-GACCACGTGGTGTTTAGCGACTCCGAGGCCTGTCGCTGCCTTTCACTAACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGAAACGTCCTTCCCGATAAGGATTTCCGCGGCGAGAAAGTTGCTTAGGAGCTGACGATAATACCAGGTCTTTGACCGTGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTAGATGAGATGATCC- Harknessia_eucalyptorum_AY720809.1 ---------GGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTTCAAGCCCTCGTCTGTGCCTTGGGCGCGTTCGCTAATGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCCATCCTATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATAGTCGGACGTACG-AAAACATGGAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGATTTCCCTGGTACGTCAGAGACCACGTGGTGTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGATTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_eucalyptorum_AY720810.1 ---------GGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTTCAAGCCCTCGTCTGTGCCTTGGGCGCGTTCGCTAATGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCCATCCTATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATAGTCGGACGTACG-AAAACATGGAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGATTTCCCTGGTACGTCAGAGACCACGTGGTGTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGATTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_fusiformis_AY720784.1 ---------GGAGGCCTTCTCCCTCTTCGTGAGTCAACCACC---------------TTGCAAGCCCTCGTCTGTGCCTTGGGCGCGTTCGCTAATAGAGCTTCTTCCCAATTACAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCTTGCTTGATAA-CCCCATCCCATC----GCGACTG-TCGCGCAACCGATGCTGCAGAGCCACATGCGCGGTCCCTACACCATCGTCGGACGTACG-AAAACAAGAGGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCTGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGATTTCCCTGGTACGTCAGAGACCACGTGGTTTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAATTCCTTACCATGATGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_fusiformis_JQ706179.1 ----------GAGGCCTTCTCCCTTTTCGTGAGTCAACCACC---------------TTGCAAGCCCTCGTCTGTGCCTTGGGCGCGTTCGCTAATAGAGCTTCTTCCCAATTACAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCTTGCTTGATAA-CCCCATCCCATC----GCGACTG-TCGCGCAACCGATGCTGCAGAGCCACATGCGCGGTCCCTACACCATCGTCGGACGTACG-AAAACAAGAGGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCTGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGATTTCCCTGGTACGTCAGAGACCACGTGGTTTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAATTCCTTACCATGATGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_karwarrae_AY720811.1 ---------GGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAGCCCTCGCCTGTGCCTTGGGCGCTTTCGCTAACGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCAATCATATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGGACGTACA-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACTCCGACAACAACGGCACCATCGACTTCCCCGGTACGTCAGAGACCACGTGGTGTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGAATTGGTACTA-------------------CAGAGTTCCTTACCATGATGGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Harknessia_malayensis_CPC_28752 ----------GAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAAACCCTCCGCTGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCCCCGCCGCCACGCATGCTTGATAA-CCCCATCCCGTC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGGACGGACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAGAGACCACGTGGTGTTTGGCGACCCCGAGGCCTGTCGCTGCCGTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Harknessia_pellitae_CPC_27606 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAACCCTCCCCTGTGCCTTGGGCGCGTTCGCTGACGGAGCTTCTTCCCAACACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCCATCCTATC----GACACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGGACGTACG-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCGGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCAAAGACCACGTGGTGTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGCGACTA-------------------CAGAGTTTCTTACCATGATGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Harknessia_platyphyllae_CPC_28862 -------AAGGAGGCCTTCTCCCTCTTCGTGAGTCACCCACC---------------TTCCAAGCCCTCGCCTGTGCCTTGGGCGCTTTCGCTAACGGAGCTTCTTCCCAATACCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCAATCATATC----GCAACTG-TTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGGACGTACA-AAAACAAGAAGCTAAGATG-GTCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCCGGTACGTCAGAGACCACGTGGTGTCTACCGACTCCGAGGCCCGTCGCTGCCTTTCACTGACACGACTTGCGACTA-------------------CAGAGTTTCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCTGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGACACGTCCTTCCCGATAAGGGTTTCCGTGGCGAGAAAGTGGTTTAGGAGCTGACGATAAGACCAGGTCTTTGACCGTGACAACAACGGCTTCATCTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGATCCG Harknessia_ravenstreetina_JQ706197.1 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAACCCTCCG-CTGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAACATCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCCATCCCGTC----GCAACTGCTTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGGACGTACG-AAAACAAGAAGCTAAGATG-GCCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCTGAGACCACGTGGTGTTTAGCGACTCCGATGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGAAACGTCCTTCCTGATGAGGGTTTCTGTGGCGAGAAAGTGGTTCAGGAGCTGACGAGAAGATCAGGTCTTTGACCGTGACAACAACGGCTTCATTTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGAT--- Harknessia_ravenstreetina_JQ706198.1 TGAGTTCAAGGAGGCCTTCTCCCTCTTCGTGAGTCACGCACC---------------TTCCAACCCTCCG-CTGTGCCTTGGGCGCGTTCGCTAACGGAGCTTCTTCCCAACATCAGGACAAGGATGGCGATGGTGAG--------CCTCTCTCCCCCGCCACGCATGCTTGATAA-CCCCATCCCGTC----GCAACTGCTTGCGCAACCGATGCTGCAGAGCCACACGCGCGATCCCTACACCATCGTCGGACGTACG-AAAACAAGAAGCTAAGATG-GCCGTCCAGGTCAAATCACCACCAAGGAGCTCGGCACCGTCATGCGATCGCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAAGACATGATCAACGAGGTCGACGCCGACAACAACGGCACCATCGACTTCCCTGGTACGTCTGAGACCACGTGGTGTTTAGCGACTCCGATGCCCGTCGCTGCCTTTCACTGACACGACTCGCGACTA-------------------CAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGCGAAGCCTTCAAGGTGCGAAACGTCCTTCCTGATGAGGGTTTCTGTGGCGAGAAAGTGGTTCAGGAGCTGACGAGAAGATCAGGTCTTTGACCGTGACAACAACGGCTTCATTTCGGCCGCCGAGCTGCGCCACGTCATGACATCCATTGGCGAGAAGCTGACCGACGACGAGGTGGATGAGATGATCC- ; END; BEGIN SETS; CHARSET combined (CHARACTERS = Harknessia_calmodulin_species_alignment) = 16-43 58-139 147-190 194-491 510-527; END; [ The following blocks are output data for analysis step 24174 ] BEGIN TREES; TITLE First_of_six_equally_most_parsimonious_trees_obtained_from_the_Harknessia_calmodulin_alignment; LINK TAXA = TaxaForAnalysisStep24174; TREE First_of_six_equally_most_parsimonious_trees_obtained_from_the_Harknessia_calmodulin_alignment = [&R] (((Harknessia_cf._eucalyptorum_JQ706176.1:1.0,Harknessia_cf._eucalyptorum_JQ706178.1:0.0):2.0,(((Harknessia_fusiformis_JQ706179.1:1.0,Harknessia_fusiformis_AY720784.1:0.0):13.0,(Harknessia_eucalyptorum_AY720809.1:0.0,Harknessia_eucalyptorum_AY720810.1:0.0):6.0):4.0,((((Harknessia_ravenstreetina_JQ706197.1:0.0,Harknessia_ravenstreetina_JQ706198.1:0.0):10.0,((Harknessia_ellipsoidea_JQ706173.1:0.0,Harknessia_ellipsoidea_JQ706174.1:0.0):6.0,Harknessia_malayensis_CPC_28752:6.0):2.0):2.0,(((Harknessia_karwarrae_AY720811.1:5.0,Harknessia_platyphyllae_CPC_28862:0.0):6.0,((Harknessia_communis_CPC_29028:0.0,Harknessia_communis_CPC_29038:0.0,Harknessia_communis_CPC_29468:0.0,Harknessia_communis_CPC_29470:0.0):11.0,Harknessia_pellitae_CPC_27606:5.0):2.0):3.0,(Harknessia_australiensis_JQ706170.1:3.0,Harknessia_australiensis_JQ706171.1:0.0):7.0):3.0):2.0,((Harknessia_banksiae_CPC_29002:0.0,Harknessia_banksiae_CPC_29443:0.0):6.0,('Harknessia banksiae-repens CPC 28874':0.0,'Harknessia banksiae-repens CPC 29006':0.0):5.0,Harknessia_banksiigena_CPC_28232:3.0):5.0):1.0):2.0):59.0,Diaporthe_alleghaniensis_KC343249.1:105.0):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr115754] END;