#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 22, 2024; 4:15 GMT TreeBASE (cc) 1994-2008 Study reference: Cary J., Klich M., & Beltz S. 2004. Characterization of aflatoxin-producing fungi outside of Aspergillus section Flavi. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1306] [ The following blocks are input data for analysis step 2425 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2425; DIMENSIONS NTAX=9; TAXLABELS Aspergillus_ochraceoroseus Aspergillus_parasiticus Aspergillus_species_SRRC1468 Emericella_astellata__SRRC1471 Emericella_astellata_SRRC1470 Emericella_astellata_SRRC503 Emericella_astellata_SRRC512 Emericella_nidulans Emericella_species_SRRC2520 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1327] TITLE aflR; LINK TAXA = TaxaForAnalysisStep2425; DIMENSIONS NCHAR=983; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aspergillus_ochraceoroseus TATACTATATCGAGACGCACTGGCCGTA---CCCGAGTTATTGGGG---TCGAGAAG---CCAC-GAGCAACAA-CAGCAACAGCAGTCCCAGGAACAGGAACAGGAACAGGGACAGGGACAGGAACAGGAACAGGCACAGGCACAGGCACAGGAACAGACACAGGAACAGGAACAACAACCGCAACCGCAACCTCAACAACAGCAACAGCAACAGCAACAGCAACAGCA------------ACAGCACCACCAGCAGGACCAGGATCCGGATCAGGACCAGGAACAGAAACACCAGTCGCCGCATCGGGTGCCACCATTGACCCTTCCTCAACTACTGCTACCACAACTAGTAGTAGTGGCGGTCATGTCAATGTCCATGGCAACCATGCGGGGATTAACAGCAATGGCATCTGCTCACATCGTAATACTCCGGTTGTCACTCCCCATACACCGGCTACCACTGCCCGAACC----TCCCCCAAGTTAGACCATTTACGCTCTCCCCCCGAGGAAACCGAGCTCTGGAACTCAATTTTGTCTCCCAATGCCAGCAATTGTACAGATCTATCCTCTCTCCTCTCCTTGAACACCGATATTGGACAGCTCTTTGCCTCACTATCGCCCCCGAGTC--TGGA---CACAGATGCGGTGGATACCGA-TCTGCACCGGCATGGGATGGCAGACCTATCGGTGG------------------CCGATGCCGCATCCGCCTCCTTTATGCAGGATATCACCGGGACGGCTGC-TCTGTCATCCGGGTCCTCTTTTCC---CAACACG---CATCCTTGCTGTTTGACCATCTGC-TTGGAAATCCTGATGCGGCTATTCCCGAATGCCCCCGTTGGCTGCCAAC---GGCC--CGGG-AGCGAAGACGAGCCTAGTAAACTCTGCACGATTGAGTCGGTTATTGCGGATAATAAACAGATTATGGACACGATCCAGACCGTATTGGAG Aspergillus_parasiticus TACATGGTCTCCAAGCGGATGGGCCGCAATCCGCGCGCTCCCAGTCCCCTTGAT-----TCAACTCGGCGACCATCAG-----------------AGAGTC-----------------------------------TTCCTTCAG-----CCGGGTCGGA-ACAGGGACTT--CCGGCG--CACAACACGTAC-TCAACGCC--TCATGCTCATACCCAGGCCCACACTC--------------------------ATGCTCA---------------------------------------------------------------TTCTCAT---------CCGCAACC-GCATCCA-------CAATCTCAT-----------CCTCAATCGAATCAACCACCACACGCTCTGCCCACCCCCAATGGTAGCAGTAGC----------------GTCTCCGC------CATC----TTTTCTCA-CCAG---AGTCCCCCGCCACTCGTGGAGACCCAGGGCCTTGGAG-GAGATCTGGCTGGTCAG-GC--GCAA----AGCACCCTGTCTTC---CCTAACAGTCGATTCGGAATTCGGG-GGCTCTTTGC----------------AGTCAATGGA--ACACGGAAACCATG----CCGATTTCTTGGCTGAGTCGACGGGGAGTCTTTTCGACGCGTTTT-------------TGGAAGTGGGGACCCCCA---TGATCGACCCGTTCCTCGAGTCGGCCCC-ACTGCCACC---------GTTTC------AGGCG---CGCTATTGCTGCTT-TTCGCTAGCACTACAAACACTGACCTGCCTCTTCCCCCACGCCCCGCTGGGCTGTCAGCTGCGGCTGACGGACGGTGAGGACAGTTCGTGCAACCTGATGACGACTGATATGGTCATCTCGGGGAACAAGAAGGCTACCGATGCGGTCCGGAAGATCCTCGGG Aspergillus_species_SRRC1468 TATACTATATCGAGACGCACTGGCCGTA---CCCGAGTTATTGGGG---TCGAGAAG---CCAC-GAGCAACAA-CAGCAGCAGCAGCCCCAGGAACAGG------------------GACAGGAACAGGAACAGGCACAGGCACAGGCACAGGAACAGACACAGGAACAGGAACAACAACCGCAACCGCAACCTCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCACCACCAGCAGGACCAGGATCCGGATCAGGACCAGGAACAGAAACACCAGTCGCCGCATCGGGTGCCACCATTGACCCTTCCTCAACTACTGCTACCACAACTAGTAGTAGTGGCGGTCATGTCAATGTCCATGGCAACCATGCGGGGATTAACAGCAATGGCATCTGCTCACATCGTAATACTCCGGTTGTCACTCCCCATACACCGGCTACCACTGCCCGAACC----TCCCCCAAGTTAGACCATTTACGCTCTCCCCCCGAGGAAACCGAGCTCTGGAACTCAATTTTGTCCCCCGATGCCAGCAATTGTACAGATCTATCCTCTCTCCTCTCCTTGGACACGGATATTGGACAGCTCTTTGCCTCACTATCGCCCCCGAGTC--TGGA---CACAGATGCGGTGGATACCGA-TCTGCACCGGCATGGGATGGCAGACCTATCGGTGG------------------CCGATGCCGCATCCGCCTCCTTTATGCAGGATATCACCGGGACGGCTGC-TCTGTCATCCGGGTCCTCTTTTCC---CAACACG---CATCCTTGCTGTTTGACCATCTGC-TTGGAAATCCTGATGCGGCTATTCCCGAATGCCCCCGTTGGCTGCCAAC---GGCC--CGGG-AGCGAAGACGAGCCTAGTAAACTCTGCACGATTGAGTCGGTTATTGCGGATAATAAACAGATTATGGACACGATCCAGACCGTATTGGAG Emericella_astellata__SRRC1471 TATATGGTGTCTCGACGCACTGGTCGCA---TCCGAGTCATTGGAG---TGGAAAGGCCTCCAC-TACCAACTA-CAGT----------------GTTGCC---------------------------------GGCGCAAGCAG-----CAACAGCAACTACTA--CTAC--ACCAC-----CAGCAGAGACTTTAACA-----CGCAGCACAAGCAATGACAATG--A--------------------------TGGTCCG----------------------------------------------------------------CCTCCA--------AGTACAGACGCTCGCAG-------CACAGTAGTG----------CCTCCTCAACCCACTCCGCCTG-----CTG-TCATCCCTCGAAGCCCTCGTACC----------ACTCTGGTTTCCGC-G---AAACCACCATCTCCCCAGCCCACGCAAATCCATTCTCCGCCAAGCGAATCCGACCTCTGGAATGCCATCTTGTCCCCGAATGCGTCGAGCTCAACCGATCTCGCTTCCCTGCTGTCCCTCAACACCGACATCGGGCAACTGTTTGCCTCCCTCTCGCCATCGCATC--TCGATGATCTAGATGAGATGGATACCGA-ACCGCGCGCACACGGACTGGAGGGACTGTCGGTCA------------------CCGATCCCACATCTACGC---TCATGCAGGGTTT-----GGAAGGCAATCAACAACCTC-TGCCGCCGGCGTCCACGCAAACCAAT-CATCCTTGTTGTTTGGCAATCTGC-TTGGACATTCTGATGCGCCTGTTCCCCAACGCCCAAGCGGGCTGCGATC---GACC--CGGT-AGCCAGGATGGACCCAATAAGCTCTGCACAATCGAGTCGGTGATTGAAGACAACAAGCAGATTCTCGACACGGTCCAGACCGTGTTGGAG Emericella_astellata_SRRC1470 TATATGGTGTCTCGACGCACTGGTCGCA---TCCGAGTCATTGGAG---TGGAAAGGCCACCAC-TACCAACTA-CAGT----------------GTTGCC---------------------------------GGCGCAAGCAG-----CAACAGCAACTACTA--CTAC--ACCAC-----CAGCAGAGACTTTAACA-----CGCAGCACAAGCAATGACAATG--A--------------------------TGGTCCG----------------------------------------------------------------CCTCCA--------AGTACAGACGCTCGCAG-------CACAGTAGTG----------CCTCCTCAACCCACTCCGCCTG-----CTG-TCATCCCTCGAAGCCCTCGTACC----------ACTCTGGTTTCCGC-G---AAACCACCATCTCCCCAGCCCACGCAAATCCATTCTCCGCCAAGCGAATCCGACCTCTGGAATGCCATCTTGTCCCCGAATGCGTCGAGCTCAACCGATCTCGCTTCCCTGCTGTCCCTCAACACCGACATCGGGCAACTGTTTGCCTCCCTCTCGCCATCGCATC--TCGATGATCTAGATGAGATGGATACCGA-ACCGCGCGCACACGGACTGGAGGGACTGTCGGTCA------------------CCGATCCCACATCTACGC---TCATGCAGGGTTT-----GGAAGGCAATCAACAACCTC-TGCCGCCGGCGTCCACGCAAACCAAT-CATCCTTGTTGTTTGGCAATCTGC-TTGGACATTCTGATGCGCCTGTTCCCCAACGCCCAAGCGGGCTGCGATC---GACC--CGGT-AGCCAGGATGGACCCAATAAGCTCTGCACAATCGAGTCGGTGATTGAAGACAACAAGCAGATTCTCGACACGGTCCAGACCGTGTTGGAG Emericella_astellata_SRRC503 TATACGGTGTCTCGCCGCACTGGACGCA---CCCGTGTTATTGGTG---TTGAG------CAAC-CAGCAACCA-CAGC----------------AAAG-----------------------------------GACATGGGCA------CGACATCAGTTACGAGACCA---GCAAC-----CTCCACACTCCCTAACAGCGGCCACAGCACTCCTGTGGATAATGCAA--------------------------AGGTCT------------------------------------------------------------------CTCAG--------TCTGCAAGTGGTAACAG-------CAACCCCATA----------CCTTTCGAGCAGGCCCAACAAA-----GTG-TTGCGTCGCAGAACCCA-GTA------------------ATTACCACCG---GAGCC----TCGCCCCAGGTTGGGCAACTACATTTTTCTCCTAACGAATCTGAGCTATGGACTGCTATCTTCTCTTCCAATGCTTCCAGTTCGACTGACCTTTCCTCGCTTCTGTCTGTCAACACTGACTTCGGGCAACTGTTTGCCTCGCTATCGCCTCAGCATT--TGGAAGACGCCGAGGCTTTGGTAGCCAACACCG-ACGTACATGGATTGGCGGGCCTGTCGGTAG------------------CCGATCCCTCGTCGGCAG---TGCTACAGGGCTT-----AGATGCCTCT-GATGCCCTCATACCCCCT-CTTTCAAACAACACAACGCATCCCTGCTGCTTGGCAATCTGC-TTGGACACTCTCATGCGCCTCTTTCCTAACGCCCGAGCGGGCTGCCAAC---GCCC--TGGA-GGCCACGATA---CAGATAAGCTCTGTACAATTGAGACTGTTATTGAAGATAACAAGGAAATTCTTGACACTATCCAATCAGTGCTGGAG Emericella_astellata_SRRC512 TATACGGTGTCTCGCCGCACTGGACGCA---CCCGTGTTATTGGTG---TTGAG------CAAC-CAGCAACCA-CAGC----------------AAAG-----------------------------------GACATGGGCA------CGACATCAGTTACGAGACCA---GCAAC-----CTCCACACTCCCTAACAGCGGCCACAGCACTCCTGTGGATAATGCAA--------------------------AGGTCT------------------------------------------------------------------CTCAG--------TCTGCAAGTGGTAACAG-------CAACCCCATA----------CCTTTCGAGCAGGCCCAACAAA-----GTG-TTGCGTCGCAGAACCCA-GTA------------------ATTACCACCG---GAGCC----TCGCCCCAGGTTGGGCAACTACATTCTTCTCCTAACGAATCTGAGCTATGGACTGCTATCTTCTCTTCCAATGCTTCCAGTTCGACTGACCTTTCCTCGCTTCTGTCTGTCAACACTGACTTCGGGCAACTGTTTGCCTCGCTATCGCCTCAGCATT--TGGAAGACGCCGAGGCTTTGGTAGCCAACACCG-ACGTACATGGATTGGCGGGCCTGTCGGTAG------------------CCGATCCCTCGTCGGCAG---TGCTACAGGGCTT-----AGATGCCTCT-GATGCCCTCATACCCCCT-CTTTCAAACAACACAACGCATCCCTGCTGCTTGGCAATCTGC-TTGGACACTCTCATGCGCCTCTTTCCTAACGCCCGAGCGGGCTGCCAAC---GCCC--TGGA-GGCCACGATA---CAGATAAGCTCTGTACAATTGAGACTGTTATTGAAGATAACAAGGAAATTCTTGACACTATCCAATCAGTGCTGGAG Emericella_nidulans TATATGGTTTCCAGGCGCACTGGACGCA---CTCGCGTCATTGGTG---TTGAG--------------CAGCCA-AAG-----------------ACAG-------------------------------------CACCATCAC-----CAACAACACCGACGA----AT--ACGA------CAGCAG-----CTACTA-------CAGCA---ACGAAGGCA---------------------------------GGACC-------------------------------------------------------------------------------------ACCAGTTACAA-------CAGA-CAGTG----------CTGTTCATACAC---------------CTG-TC-------------------------------------ATTACTAC-G---GCGCC---CTCTCCCAAGCCGGTGCAGATCCAGTCTCCTCCAGCCGAACCAGATCTCTGGGGCGCCATCCTGTCTCCGAATACTTCCACCTCCACCGACCTATCGTCACTCCTCTCGGTGAATACAAATTTCAGTCAGCTCTTCGCCTCGCTTTCTCCTTCGCTTC--TTGAGGGTATGGATGGCATGGATGCCGA-AATGCACGCGCCGGAGCTGGGCGCATTGTCGGTCG------------------CCGACCCATCGTCCTCCA---TGATGCAGGGGTT-----AGAGGCCCCT-AACGCTGCCCAACCACCG-TCTTCGAACACCACAAGCCACTCCTACTGCCTGTCCATCTGC-CTGGATACTCTCATGCGGCTCTTTCCGAATGCTGGCGCTAACTGCGAGC---GACC--CGGG-CACGAGAGCAACCCCGGCAAACTGTTCACTATCGAGTCCGTTATTGAGGACAACAAACAAATCTTGGACACAGCGCAGACAATCCTGGCT Emericella_species_SRRC2520 TATACGGTGTCTCGCCGCACTGGACGCA---CCCGTGTTATTGGTG---TTGAG------CAAT-CAGCAACCA-CAGC----------------AAAG-----------------------------------GTCATAGGCA------CGACATTAGTTACGGGGCCA---ACAAG-----CTCCACACTCCCTAACAGCGGTCACAGCAGTCCTGATGATAATGCAA--------------------------AGGTCT------------------------------------------------------------------CTCAA--------TCTGCAAATGGTAACAG-------CAACTCCATA----------CCTTGCGAGCAGTCACAACAAA-----GTG-TTGCGTCCCAGGGCCCA-GTA------------------ACTACCACCG---GAGCC----TCGCCCCAGTTTGCGCAAGTACAATCTTCTCCTAACGAATCTGAGCTATGGACTGCTATCTTCTCTTCCAATGCTTCCAGTTCGACTGACCTTTCCTCGCTTCTGTCTGTCAACACTGACTTTGGGCAACTGTTTGCCTCGCTATCGCCTCAGCAAT--TGGAAGATGCCGAGGCTATGGTAGCCAACACCG-ACGTACATGGATTGGCGGGCCTGTCGGTAGACCATCCCTCGTCGGTAGCCGATCCCTCATCGGCAG---TGCTACAGGGCTT-----AGATGCCCCT-GATGCCCTCATACCGCCT-CTTCCAAATCACACAACAGATCCCTGCTGCTTGGCAATCTGC-TTGGACACTCTCATGCGCCTCTTTCCTAACGCCCGAGCACGCTGCCAAC---GCCC--TGGA-GGCCTCGAGA---CGGATAAGCTCTGTACAATTGAGACTGTTATTGAGGATAACAAGGAAATACTTGACACCATCCAATCAGTGCTGGAA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = aflR) = N: 1-983; CODONPOSSET CodonPositions (CHARACTERS = aflR) = N: 1-983; END; [ The following blocks are output data for analysis step 2425 ] BEGIN TREES; TITLE Tb7200; LINK TAXA = TaxaForAnalysisStep2425; TREE aflR = [&R] (Emericella_astellata_SRRC503,(Emericella_astellata_SRRC512,(Emericella_species_SRRC2520,((Emericella_astellata__SRRC1471,Emericella_astellata_SRRC1470),(Emericella_nidulans,((Aspergillus_species_SRRC1468,Aspergillus_ochraceoroseus),Aspergillus_parasiticus)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2055] END;