#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 22, 2024; 17:09 GMT

TreeBASE (cc) 1994-2008

Study reference:
Cary J., Klich M., & Beltz S. 2004. Characterization of aflatoxin-producing fungi
outside of Aspergillus section Flavi. Mycologia, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1306]

[ The following blocks are input data for analysis step 2427 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2427;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Aspergillus_ochraceoroseus
            Aspergillus_parasiticus
            Aspergillus_species_SRRC1468
            Emericella_astellata_SRRC1470
            Emericella_astellata_SRRC1471
            Emericella_astellata_SRRC503
            Emericella_astellata_SRRC512
            Emericella_nidulans
            Emericella_species_SRRC2520
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2787]

	TITLE stcE;
	LINK TAXA = TaxaForAnalysisStep2427;
	DIMENSIONS NCHAR=432;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  ]
[                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .  ]
Aspergillus_ochraceoroseus        CGGGGTCCGCAGTGTAGCCACGCAGAAAGCCACCCTGGAGGAGCTCCCCAGGGCCGACGACTCGCAACTGATTGTCCTACAGCTGGACTGTACTTCCCAGTCTGACGCCGACGAAGCCATTGCGACG--CTCAAGCAAGAATATGGCCTCACGTATCTCGATGTAGTGATCGCGAATGCCGCGATCGCCGCCAACTACGGCCCCGCGTCGACCATGCCGCTGGAGCATCTCGAAGCCCATATGAAAGTCAACGCCTACGCCGTCCTGCTGCTCTTCCAGGCCACGCGACTCCTGCTGCAAGAGGCAGCCTCCTACCACCCTCCACAGTTCATTCTGATCGGGGCGCCCATCAGCACCATTACCGAGATGGAAGGATGTGCTCGGGCACCGCTGACCAACTACGGGCTCTCCAAGTTGGCCGCCAACTACCTA
Aspergillus_parasiticus           TTGGCTGCGCAACGTCCGCACCGCTACGCCGGCACTCTCGGCACTAACCGTCGCTGAAGGCAGTCGGATGATCATAGTGCAGCTTAATTCCGACTCGGAAACTGATGCCCAGGCAGCCGTCCAGACA--TTGCGGGAGGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCCCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCGTCCTACTGTTTCAGGCAACCCGCCTGATGCTGCA----GCAGTCCAA-GCAACAGGCCA-AGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGACTACTCGCGGGCCCCACTGACGGCGTACGGAGTGTCGAAGCTGGCGGCCAACTACATG
Aspergillus_species_SRRC1468      CGGGGTCCGCAGTGTAGCCACGCAGAAAGCCACGCTGGAGGAGCTCCCCAGGGCCGACGACTCGCAACTGATTGTCCTACAGCTGGACTGTACTTCCCAGTCTGACGCCGACGAAGCCATTGCAACG--CTCAAGCAAGAATATAGCCTCACGTATCTCGATGTAGTGATCGCGAATGCCGCGATCGCCGCCAACTACGGCCCCGCGTCGACCATGCCGCTGGAGCATCTCGAAGCCCATATGAAAGTCAACGCCTACGCCGTCCTGCTGCTCTTCCAGGCCACGCGACTCCTGCTGCAAGAGGCAGCCTCCTACCACCCTCCACAGTTCATTCTGATCGGGGCGCCCATCAGCACCATTACCGAGATGGAAGGATGTGCTCGGGCACCGCTGACCAACTACGGGCTCTCCAAGTTGGCCGCCAACTACCTA
Emericella_astellata_SRRC1470     TTGCGTGCGCAACGTCGCCACCGCTACGCCGGCGCTCTCAACACTAGCCGTTGCCGAAGGCAGTCGGATGATAGTGGTGCAGCTGGACTGCAACTCGGAAACCGACGCCCAGACAGCTGTCCAAACC--CTGCGGGAAGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACTATGCCTCTCGAACATCTCCAGGCGCACATGATGATCAATATGTATGCTCCCGTCTTGCTGTTTCAGGCAACCCGCCTGATGCTGCA----GCAGTCCAA-GCAACAGGCCA-AGTTTGTCTTGGTCGGCGCCCCGATCAGCACCATCACCAACATGCACAACTACGCGCGGGCCCCACTCACAGCGTACGGAGTGTCGAAGCTGGCGGCCAACTACATG
Emericella_astellata_SRRC1471     TTGCGTGCGCAACGTCGCCACCGCTACGCCGGCGCTCTCAACACTAGCCGTTGCCGAAGGCAGTCGGATGATAGTGGTGCAGCTGGACTGCAACTCGGAAACCGACGCCCAGACAGCTGTCCAAACC--CTGCGGGAAGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACTATGCCTCTCGAACATCTCCAGGCGCACATGATGATCAATATGTATGCTCCCGTCTTGCTGTTTCAGGCAACCCGCCTGATGCTGCA----GCAGTCCAA-GCAACAGGCCA-AGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACAACTACGCGCGGGCCCCACTCACAGCGTACGGAGTGTCGAAGCTGGCGGCCAACTACATG
Emericella_astellata_SRRC503      GGGAGTCCGCAATGCCGCCTCCCAAGCAGCGGCGCTTCATGAGCTACCAAGGGCCGACGATTCCAAACTGATCGTTGTCCAGTTAGACTGCGCATCTAGATCCGACGCCGAAGCCGCTATT-CAGCAG-CTCAAAGCCGACCATGGCATCGCTCATCTCAACGTCGTAATTGCCAATGCCGCCATTGCCGCCAACTACGGACCAGCGTCAACAATGCCTCTCGAGCACCTGGAAGCCCATATGCAAGTCAACGCTTACGCTGTCCTTTTGCTGTTCCAAGCTACGCGCGACATGATGCA---GGCATCCA------ACGCTCCGCAGTTCATCTGCATCGGCGCTCCTATCAGTACGATCACCGAGATGGAGGGCTGCGCCCGGGCACCGCTCACCAATTATGGGCTGTCCAAGCTGGCTGCGTGCTATCTT
Emericella_astellata_SRRC512      GGGAGTCCGCAATGCCGCCTCCCAAGCAGCGGCGCTTCATGAGCTACCAAGGGCCGACGATTCCAAACTGATCGTTGTCCAGTTAGACTGCGCATCTAGATCCGACGCCGAAGCCGCTATT-CACCAG-CTCAAAACCGACCATGGCATCGCTCATCTCAACGTCGTAATTGCCAATGCCGCCATTGCCGCCAACTACGGACCAGCGTCAACAATGCCTCTCGAGCACCTGGAAGCCCATATGCAAGTCAACGCTTACGCTGTCCTTTTGCTGTTCCAAGCTACGCGCGACATGATGCA---GGCATCCA------ACGCTCCGCAGTTCATCTGCATCGGCGCTCCTATCAGTACGATCACCGAGATGGAGGGCTGCGCCCGGGCACCGCTCACCAATTATGGGCTGTCCAAGCTGGCTGCGTGCTATCTT
Emericella_nidulans               CGGTCTCCGCAATCGCACTTCGCAGGCGGGGGCCTTGGATGCGCTCCCAAGAGGCGAGAACTCCTCGCTGATCGCAGTCCAACTGGACAGTGGATCGAAGTCCGATCCCGCCGACGC-GGT-CAGCATTCTCCAGCGCGATTACGGCATTACGCATCTCGATGTAGTGATCGCGAACGCAGCTATTGCGGCCAACTACGGTCCAGCCTCGACCATGCCTCTCGAGTATCTGGAGACTCACATGCAGATTAACGCATACGCGGCCCTGCTACTGTTCCAGGCGACTAGGGTCCTTCTCCA---GGCCGCCA------AATCGCCGCAGTTCATCTGCGTCGGGGCCCCGATTAGCACGATTACCGAGATGGAGAGCTGTGCGCGGGCACCCGTCACAAATTATGCACTTTCAAAGCTGGCCGCCTGCTATCTG
Emericella_species_SRRC2520       GGGAGTCCGCAATGCCGCCTCCCAAGCAGCGGCGCTTCATGAGCTACCAAGGGCCGACGATTCCAAACTGATCGTTGTCCAGTTAGACTGCGCATCTAGATCCGACGCCGAAGCCGCTATT-CAGCAG-CTCAAAGCCGACCATGGCATCGCTCATCTCAACGTCGTAATTGCCAATGCCGCCATTGCCGCCAACTACGGACCAGCGTCAACAATGCCTCTCGAGCACCTGGAAGCCCATATGCAAGTCAACGCTTACGCTGTCCTTTTGCTGTTCCAAGCTACGCGCGACATGATGCA---GGCATCCA------ACGCTCCGCAGTTCATCTGCATCGGCGCTCCTATCAGTACGATCACCGAGATGGAGGGCTGCGCCCGGGCACCGCTCACCAATTATGGGCTGTCCAAGCTGGCTGCGTGCTATCTT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = stcE) = 
		N: 1-432;
CODONPOSSET  CodonPositions (CHARACTERS = stcE) = 
		N: 1-432;
END;
[ The following blocks are output data for analysis step 2427 ]
BEGIN TREES;
      TITLE Tb7202;
      LINK TAXA = TaxaForAnalysisStep2427;
      TREE stcE = [&R] (Aspergillus_ochraceoroseus,(Aspergillus_species_SRRC1468,(((Emericella_astellata_SRRC503,Emericella_species_SRRC2520,Emericella_astellata_SRRC512),Emericella_nidulans),((Emericella_astellata_SRRC1471,Emericella_astellata_SRRC1470),Aspergillus_parasiticus))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2057]


END;