#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 04, 2025; 23:28 GMT TreeBASE (cc) 1994-2008 Study reference: Hibbett D. 1996. Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi. Molecular Biology and Evolution, 13: 903-917. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S285] [ The following blocks are input data for analysis step 246 ] BEGIN TAXA; TITLE TaxaForAnalysisStep246; DIMENSIONS NTAX=22; TAXLABELS Ankistrodesmus_stipitatus Characium_saccatum Chlorella_luteoviridis Clavicorona_pyxidata Dunaliella_parva_943 Dunaliella_salina Dunaliella_parva_1512 Hymenoscyphus_ericae_1506 Hymneoscyphus_ericae_25S Lentinellus_montanus_242 Lentinellus_montanus_246 Lentinellus_omphalodes Lentinellus_ursinus Mougeotia_caldariorum Mougeotia_scalaris Panellus_stypticus Pneumocystis_carinii_1506 Pneumocystis_carinii_25Sa Pneumocystis_carinii_25Sb Protomyces_inouyei_1506 Protomyces_inouyei_943 Ustilago_maydis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1279] TITLE Fig._2; LINK TAXA = TaxaForAnalysisStep246; DIMENSIONS NCHAR=923; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 4 5" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ankistrodesmus_stipitatus AAAGCACTATTGCCCATCATAGCAGCTGTCCACAAAGCAGTCTGCTAGTCGTCGTTGCACCGCTTTGCAAGGCGCAACGCACG-----------------------------------------------------------------------------------------------GCGAGACCG-TCGAATTG--CGGGGACATCCTT-ACAGCTCAAGCTACCAACTTGTCGCAGAAATGCTGGCAAGGG------------------------------------------CCGGGGT-AATGA----CCCA-GGGTATGGTAAAAACGCTTGAGATT---------------------GGA-TAATCCGCAGCCAAGCACCTTACCCGGATTCAACGTCCGG-------------------------------------------------------------------------------------------------------------------AAAGGTGAAGGTTCAGAGACTAGGTGGCGGTCGGTCACGAGACGT---------------------------------------------GGCTTAAGATAGAGTCCGTTCGCGCTGAAAAGCGTTCGTCGGGAAGAAAGCCTTAGCAAGGCCGGAGCCAGACGAAGGGTAGCCATTATTGGCTGCCTCGAGGTACACGGGTGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC Characium_saccatum AACACACCTAGCGGATAAAAGGGGCTGTTAAAAGCAGCTAACCCCTAGTGGCCTCAGTCGATAGGGCTGAGAGACT------------------------------------------------------------------------------------------------------GCGACACTG-TCAAATTG--CCGGGAACTCCTGCTAAGCTGTTGATACCGCTGACTCAGGGAAACCTTAGCTCAGCA-----------------------------------------CCGAGGGGAAA--CT----CACGGGTATGGTAAGAA---------------------------------------------------------TCAACAGATAGGGATAATCGGCAGCCAAGCGCTAAGGACTAGCAATAGTC------------------------------------------------------------------------------------TATGCGTGCAGTTCACAGACTAAATGGCAGTGGGTTCGGCTCAGAGAGTCCG--------------------------------------AGCTTAAGATATAGTCGGTCCCTACCGAAAGGTAGACTGTGGGAGGAAGCTCGTTCGGTGAGCGGAGAGCCCACAGTGGTCGAGTTAATACCACTTCTCGCAAGGGAAGCGGCGGTCTTAGTCTGTTAAGGGCTTCAAGACTCGTCTCGCACTGGAGTAAACG-------------------------------------------------------------------------------------------------------------------------------------------------CT Chlorella_luteoviridis CGAGAAACTTCGGTTGTGTGCCACGCTGCGAGCCTGCGAGATCTACTGTTAAACTCCGTGCCGCCCAGCACGCGAGGGGTCTCGACAACGG{CG}TGCGCTAGTCCATCTGCTATGTGAGCAGGGTGG-----------------------------------------------------GCGACACCG-TCAAATTG--CGGGGATCTCCT--ATAGCTATCGTACCCGCTCAGCGCTCGAAAGGGCGCTGTGCTCAAGGTAACAATCGGTGAGATGCGACAATGGACAATCCGCAGCCGGGTCCTAAG-CTCTTCGCCGGGTATGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCGGTTCACAGACTAGATGTCGGTGGGTCATTATCGAAAAT------------------------------------------GGCTTAAGGTATAGTCGGACCACATGGGAGACCATGATGTGGTGAATAAGGAGATACCATCTCCCCGAGCGCCACGGTGCGCTCAGTCGAGCGGGCACGGGTCGGTCGGCATGGCCGTTCTTAGTTGGTGGGTTGCCTTGTCAGGTTGATTCCGGTAACGAACGAGACCTCAGCCTGCTAAATAGTCACGTTCGGCCTTGGCCGGCGCTGCGCTTCTTAGAGGGACTATCGGCGACTAGCCGATGGAAGTGTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGTGTTACAC4 Clavicorona_pyxidata AAACGCAACAGCTTAGCCGCAGTGGCTCTGCTCCGAACAGCAGCCCGAAAGGGTGAGGTGGTTTAAAAGCCTTGAGGTTCGATCCGAGGACCTCTAAAGCGAAATGCTAGTCTCCCTCGTGGGGG-----------------------------------------------------GCGACACCT-TCAAATTGA-CGGGGAACTCCT--AAAGCTCAGAGCACCAAGCTTCGTTCCGAAAGGGCGGGGTGG------------------------------------------CCAG-GTTAATAGC---CTC--GGGTACGGTAAAAGACTCTCGAGATGTTACAAT-------------GGA-CGATCCGCAGCCAAGGCCCTA-------------CGGCTTCCCTTCGCGGGGTGAGC--------------------------------------------------------------------------------------------------TACGGGACAGGTTCAGAGACTAGATGGAGGTGGGTCGTCGCGCGTCGAC-----------------------------------------GGCTTAAGGTATAGTCCGTTCGCGAGCGAAAGCTCGATGAGGTTTAGGTAAACCCGCCTTTGACAAAACACG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA Dunaliella_parva_943 TAAAAAGCAGACTCAGCGCCTAAGAGTCAGTGGGAAACCATTGGCTAGTGCTTGGGTTTCATTACTCAAGT-----------------------------------------------------------------------------------------------------------GCAACACTGATCAAATTG--CGGGAAAGCCCT--AAAGCTTTGCTAACCAAGCTAAGTGTGAAAGCACTCAGTGG-------------------------------------------CCGG-GTTAAAGAC---CTC--GGGTATGGTAAAATCAGCAAAGATGCAACAAT--------------GGG-CAATCCGCAGCCAAGCTCCTGAAGCCTTATAGGC-------------------------------------------------------------------------------------------------------------------------AATGGAGAAGGTTCAGAGACTAAATGGCAGTGGGCCAACTTGTT----------------------------------------------GGCTTAAGATATAGTCCGTCCCAGCTGAAAGGCTGTCTGCTAGAGGAAGACCTTTCTAGGTCTGAGAGCTAGTAGAGGGTAGGAGAAGTCTCTCCTACCTGGAGGAAACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA Dunaliella_salina TGCCAGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGCGTTAACTTAGCAGCAAGCTCAGCGCCTCAAAGTCGAAGGGAAACCTTTGGCTAGTATCTGGGTGTAGATTTCACCTAAGTGCAACACTGTTCAAATTG--CGGGAAAGCCCT--AAAGCTTTGCTAACCAAGCTGTCCTAGAAATGGGATGGTGG-------------------------------------------CCAG-GTGAAAGAC---CTT--GGGTACGGTAAAATAGCAAAGATGCAACAAT---------------GGG-CAATCCGCAGCCAAGCTCCTACGGGCTGTCAAAGCC-----------------------------------------------------------------------------------------------------------------------TATGGAGAAGGTTCAGAGACTAAATGGCAGTGGGCAAGCATGGCAATGCT----------------------------------------TGCTTAAGATATAGTCCGTCCCAGCTGAGAAGCTGCCTATGAGAGGAATGCCGTAAGGCAGGAGAGCTAATAGGAAGTAAGTGTCTTTAATCAACTTACTTGGATTCCACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA Dunaliella_parva_1512 ATATACCATTCACTTGCGGATGATAGGGGCAGTGAAAAGCTGCTAACCCCTAGTGAGCTCTCCCTACTCCTTTGTACATAGAGCTC--------------------------------------------------------------------------------------------GCAACACCA-TCAAATTG--CCGGGACATCCTG-TTCACA-TGCTGCTGGTACCTCCAGGCACAGGGAAACCTTGCACTGGAA-----------------------------------CCATGGTGAAAG-C---CGT--GGGTATGGTAAAAATCTGGCAGCTA---------------------GGGACGATCGGCAGCCAAGC-GCTAAGGGAGTCTCATTTTAACTGATGAGGCTCTGAAGCGTGCA--------------------------------------------------------------------------------------------------------GTTCACAGACTAAATGGTGGTGGGTTCCCTTGGGG---------------------------------------------AGCTTAAGATATAGTCGGTCCCCACCGCAAGGTGGGCTCATGGGAGAAAAGCCTTGTAAGAAGGCTGGAGAGCCCATGAGCAGCTTGAGCAGTTGTTCTCAAGCTGGGGTAAACGAGGTGAACCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT Hymenoscyphus_ericae_1506 ---TCCTTCCGC---CGATCAGCACGGA----GACCTT-------GCAACCCTTAGG---GGAG-----GCAGC---ACGACAGTA---------------AACAAAGCTTGCC-GTTTGCAAGTCGGCCAATCGGTCG---------------------------------------GCAACACAA-TCGAATTGA-CGGGGACCTCCT--AAAGCC----CAGTTCTACCAACCAGTGAGGGAAACCTCCGCTGGGGC------------------------------------CTAT-GCTAAAAAC---ATG--GGAGATGGTAAGAAGGAACTGAGATT--------------------GGA-CAATCCGCAGCGAAGACCCTA-----------------------CCGGCTCCG-GCT--------------------------------------------------------------------------------------------------CACGGGTACCGTTCACAGACTAAGTGATTGTGGGCGGG--GCGAT----CGCGCCC----------------------------------TGTCTAAGATATAGTCGGACTCTACCCGAAAGGATAGAGGATAGCAT-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG Hymneoscyphus_ericae_25S GG---------TAAA------------------ACACACCGCAGAACGGTGCTAGGTGGTTAAGAGGCCGC---------TGAG---------------------AAGCGCGCCTAG------TCCTGTTCTCAG---G---------------------------------------GCGACATTG-TCAAATTGTTCGGGGACGTCCTG-TCACTG----------------T-GTAACACCAACCGTCCGGGGAAAC------------------------------------TCGG-GCGGGGCCC---TCA--CGGGGTGGTAAGAGAGTACAGGATGTAACAAT--------------GGA-TGATCCGCAGCCACA--CCTA-----------------------CGGGCGGAA-GCC--------------------------------------------------------------------------------------------------TACGGGTGGGGTTCACAGACTCGACGACAGTGGGCTCGACAG------------------------------------------------AGCTTAAGATAGAGTCGGACCCCCGAGAGATCGGGCGGTGGGTGACTCTTCGAGGGGATCCTACCAGGCAGTCTGCCCGGAGCAATCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A5 Lentinellus_montanus_242 AAACACGCTAACAAGC-CTAGCCGCAGT-AGCTCTGCTCCGAACAGCAGCCTGAAAGGGTGAGGTGGTTTCAGCCCGGGGTGGTTTTCAAAGCCATCCCAAATCTAAATGCTAGTCCGCCTCCGGGTGG-------------------------------------------------GCGACACCT-TCAAATTGA-CGGGGAACTCCT--AAAGCTCGGTGCACCAAGCCCCATAATATCCGAAAGGGTGGGGTGG--------------------------------------CCAG-GTTAATAGC---CTC--GGGTACGGTAAAAGCCACTGAGATGTTACAAT--------------GGA-CAATCCGCAGCCAAGGCCCTA-------------CGTCGCCCTTCGGGGCGA-------------------------------------------------------------------------------------------------------TACGGGACAGGTTCAGAGACTAGATGGAGGTGGGTCGTTGCAACATAC------------------------------------------GGCTTAAGGTATAGTCCGTCTGCACACGAAAATGTGCAGGTTGGTTGCCCAT?AAAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA Lentinellus_montanus_246 AAACACGCTAACAAGC-CTAGCCGCAGT-AGCTCTGCTCCGAACAGCAGCCTGAAAGGGTGAGGTGGTTTCAGCCCGGGGTGGTTTTCAAAGCCATCCCAAATCTAAATGCTAGTCCGCCTCCGGGTGG-------------------------------------------------GCGACACCT-TCAAATTGA-CGGGGAACTCCT--AAAGCTCGGTGCACCAAGCCCCATAATATCCGAAAGGGTGGGGTGG--------------------------------------CCAG-GTTAATAGC---CTC--GGGTACGGTAAAAGCCACTGAGATGTTACAAT--------------GGA-CAATCCGCAGCCAAGGCCCTA-------------CGTCGCCCTTCGGGGCGA-------------------------------------------------------------------------------------------------------TACGGGACAGGTTCAGAGACTAGATGGAGGTGGGTCGTTGCAACATAC------------------------------------------GGCTTAAGGTATAGTCCGTCTGCACACGAAAATGTGCAGGTTGGTTGCCCATAA?C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA Lentinellus_omphalodes AAACACGCTAACAAGC-CTAGCCGCAGT-AGCTCTGCTCCGAACAGCAGCCTGAAAGGGTGAGGTGGTTTCAGCCCGGGGTGGTTTTTTTTTCTTTTCAAAGCCATCCCAAATCTAAATGCTAGTCCGCCTCCGGGTGG---------------------------------------GCGACACCT-TCAAATTGA-CGGGGAACTCCT--AAAGCT-CGGTGCACCAAGCCCCATAATATCCGAAAGGGTGGGG-TGG------------------------------------CCAG-GTTAATAGC---CTC--GGGTACGGTAAAAGCCACTGAGATGTTACAAT--------------GGA-CAATCCGCAGCCAAGGCCCTA-------------CGTCGTCCCTTCGGGGGGT-TGA--------------------------------------------------------------------------------------------------TACGGGACAGGTTCAGAGACTAGATGGAGGTGGGTCGTTGCAACATAC------------------------------------------GGCTTAAGGTATAGTCCGGCTGCACACGAAAATGT-GCAGGTTGGTTGCCCAATAAAACG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA Lentinellus_ursinus AAACACGCTAACAAGC-CTAGCCGCAGT-AGCTCTGCTCCGAACAGCAGCCTGAAAGGGTGAGGTGGTTTCAGCCCGGGGTGGTTTTTTTTTCTTTTCAAAGCCATCCCAAATCTAAATGCTAGTCCGCCTCCGGGTGG---------------------------------------GCGACACCT-TCAAATTGA-CGGGGAACTCCT--AAAGCTCGGTTCACCAAGCCCCATAATATCCGAAAGGGTGGGGTGG--------------------------------------CCAG-GTTAATAGC---CTC--GGGTACGGTAAAAGCCACTGAGATGTTACAAT--------------GGA-CAATCCGCAGCCAAGGCCCTA-------------CGTCGTCCCTTCGGGGGGTTGA---------------------------------------------------------------------------------------------------TACGGGACAGGTTCAGAGACTAGATGGAGGTGGGTCGTT?CAACATAC------------------------------------------GGCTTAAGGTATAGTCCG?CT?CAAACG???AT?TGG?G?TTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA? Mougeotia_caldariorum TTGGCTCGATCGTGGATCCTTTCGCGGTTGAAACTACCGAAGCCTTAGCTGCCCGAAAGGGTGACCTCCGCGACTCGCAAAACAAGGAGAGGTCTCAAAAGCTAGTGGCTCCTAGCTGCTGCTCGTGCAGTGAGT-------------------------------------------GCGACATCA-CCAAATTG--CGGG-AAATCCCT-AAAGCTTTGACTACCAAGTGCGGCGCCGAAAGGCTCGCATGG------------------------------------------CCAGGGT-AATGAC---CTC--GGGTATGGTAACAACGTCAAAGATGCAACAAT--------------GGG-CTATCCGCAGCCAAGTCCTCGCGCTTCGCAGCG--------------------------------------------------------------------------------------------------------------------------GTTGGATGCTGTTCACAGACTAGATGGTGGTGGGTTCTCGGATGCGTCCCGG--------------------------------------GGCTTAAGATATAGTCGGGCCTGCTTGGAAACAGCGGGAAATCGCAGATGCATTCACCGTTCCGTAGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG Mougeotia_scalaris TCGGAGAGACCCGATGATCTCTTTCGTGGAGTATATATCCTACCGAAGCCTTAGCCGCCCGAAAGGGTGACCCCCGCGACGTTTACTAAAACAAGGAGGGGTCCGAAAGTGCTAGTGTTCGGACTCGTTGACCGAAT-----------------------------------------GCGACATCG-TCAAACTG---GGG-AGATCCCT-AAAGCTTTGACTACCAAGCACCTGGCCGAAAGGTCGGTGTGG------------------------------------------CCAGGGT-AATGAC---CTC--GGGTATGGTGACAACGTCAAAGATGCCACAAT--------------GGG-TGATCCGCAGCCAAGTCCCCTGGAGAAGCGACTTCATGATTCTTGCCCATGACATGTCGGAGCGGACAGTATTTTGAACCCAGAGCGCCATTTTTTTGATGTCAGACAAAAATACGGTGGCCGCTCGCGTCCCTCCTCATGTCGAGTCGCTCCTCCGAGGATGCAGTTCACAGACTAAACGGCGATGGGCTTGGTGGCCTCCGTCGAGGTAAGCCG-----------------------------AGCTTAAGATATAGTCGGGCCCTCGGGAAACCGAGGGGGTATTCGCAGATGCTTTCACCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG Panellus_stypticus AAACTTGTTAGC---C-ACAGT-----T-AACTCTGCACTAAAAAGCAGCCCTAACGGGTGAGGTGGTTCAGCCCTAGAGTG--CGCAATGACTCTTAAATCTAAATGCTAGTCTG--TGCATCCTTGTGTT-GCACGG---------------------------------------GCGAGACCT-TCAAACTG--CGGGAAACTCCTT-AGAGCT----TTCACTACCGCTGCTATCACTGAAAAGTGTAGTCTGCA------------------------------------CCAG-GGTAATGAC---CTC--GGGTATGGTAATAACGTGAAAGATT---------------------GGA-CAATCCGCAGCCAAGTCCCTA-------------------AAGGTAGTTATTG-ACC--------------------------------------------------------------------------------------------------TACGGGAAAGGTTCAGAGACTAGATGGAGGTTGGTCAACTAAGT-T--------------------------------------------GGCTTAAGGTATAGTCCGTCTCTGCATGAAAGTGCAAGAGGTTTGAAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA Pneumocystis_carinii_1506 ----TTTTTATTGGTTCTT--CTGCAGTG---------CGCCAAAGGAAGCCTTAGCAGCCTGAAAGGGTGTATCTCCGCGACTATAAATAAAAAGGGGATTTTAAATGCTAGTCTGATAAAAAAAG---------------------------------------------------GCGACATTG-CCAAATTG--CGGG-AAGTCCCT-AAAGAT-----TCAACTACTAA-GCAGCTTGTGGAAACACAGTTGTGG------------------------------------CCGA-GTTAATAGC---CCT--GGGTATAGTAACAATGTTGAATATGACTCTTAATTGAGGA---AATGGG-TGATCCGCAGCCAAA-TCCTA--------------------AGGACATTTTATTGTC--------------------------------------------------------------------------------------------------TATGGATGCAGTTCACAGGCCAGATGGCAATGGGTATCCTAGTGGGATATATATATATGGA-----------------------------TGCTTAAGATATGGTCGAGCTTCTCTCGAAA-GAGAGGAGGTAGCACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG Pneumocystis_carinii_25Sa ----C-------------------AACCTTTTGAGGGTCATTAAAGCGGCGTGAAAACGT-------TCGCT--AGT------------------------GATCTGAAGC-CTTTTCAGGTT-------------------------------------------------------GCGACACTG-TCAAATTG--CGGGGAAGCCCT--AAAGAT-----TCAACTACTAA-GCAGCTTGTGGAAACACAGCTGTGG------------------------------------CCGA-GTTAATAGC---CCT--GGGTATAGTAACAATGTTGAATATGAATCTTGATTGAAGATGAAATGGG-TGATCCGCAGCCAAG-TCCTA--------------------AGGACGTATAA-TGTC--------------------------------------------------------------------------------------------------TATGGATGCAGTTCAACGACTAGATGGCAGTGGGTGTTGTTAAGACTTAGGTTTTTACA-A-----------------------------TGCTTAAGGTATAGTCTATTCTCTATCGAAA-GATAGCGTATGGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A5 Pneumocystis_carinii_25Sb ----C-------------------AACCTTTTGAGGGTCATGAAAGCAGCGTGAAAACGT-------TTGCT--A--GTG----------GTCAAGTTGGGTATTCTGA-------TTTGACT-------------------------------------------------------GCGACACTG-TCAAATTG--CGGGGAAGCCCT--AAAGCC-----TTATTCACCAA-GCAA-TTGTGGAAACACTCTTGTGG------------------------------------CCAG-GTTAATAGC---CTC--GGGTATGGTAACAGTAGTAAGGATAAATGTGAA---------AAATGGG-TTATCCGCAGCCAAA-TCCTAAGGGGAAAAAGAATTACAAATCCGTATTTTCA-TCC--------------------------------------------------------------------------------------------------TATGGATGCAGTTCAACGACTAGACGGCAGTGGGTACTGCTCTTTTTTAC-TCTGAGTAG------------------------------TGCTTAAGGTATAGTCTGTCCTTTTCTGAAAAGAGAGGGAGGGGAGGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A5 Protomyces_inouyei_1506 ---TTTGTTCTCGAGTAACGAGGATGGATATTGATCCTTCCG-CGGTGACACTCACA---GAAGCCTTTGCAGCCTCGCAAGAGTTTGGCGC------GACAGTAAAGAATGCCTGGATGCAAGTCAGC-GAC--GCTG---------------------------------------GCAACACTT-TCGAATTG--CGGGGACGTCCTT-AGAGCT-----CTAGCTACCGCAGCTGGTCTCGAAAGAGCAGCGCGCA------------------------------------CCGG-GTTAACGAC---CCT--GGGGATGGTAATAACGCTTAGCTAG---------------------GGA-TAATCCGCAGCCAAG-CCCTA---------------------AGGTGTGGAAG-CAC--------------------------------------------------------------------------------------------------TATGGGACAGGTTCACAGACTAAGTGGAAGTGGGTGGCATGCGTTAAGGCGTGTGC----------------------------------TGCTTAAGATATAGTCGGTCTTGCTGAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG Protomyces_inouyei_943 AAAC--GTTTAT--------GTCGCAGTTAACTCTGCTCCGAAAAGCCACTCGAAAGAGTGT---------------G-GTG-------TCCTTA---GA------GGCTAGTC-AG-TACG---CTG--------------------------------------------------GCAACACAA-TCAAATTG--CGGGAAACTCCTT-AGAGCT-CAAGCTACCGC---TGCTGCCCAGAGAT-GGGTTG-TGGCA------------------------------------CCAG-GTTAACGAC---CTC--GGGTATGGTAACAACGCTTGAGATT---------------------GGA-CAATCCGCAGCCAAG-CTCCC---------------------------------TCA--------------------------------------------------------------------------------------------------TGGGAAGAAGGTTCAGAGACTAGATGGTTGTGGGTATTG-AAACA--------GTTC---------------------------------AGCTTAAGATATAGTCCAATCCAGTGTGGAAACGCACTGGTCTAAAAGATAGAAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA Ustilago_maydis AAAC--TTTCACAG---CTAGCCGCAGT-GTCTCTGCTCCAAAAAGCCGCCTGAAAGGGTCGGT-------------GCGTG-------TTCCTATTTGAAATAATGGCTAGTCTGA-TGCGAATCAG--------------------------------------------------GCGACACAT-CCAAATTG--CGGGAAACTCCTT-AGAGCT-CTAGCTACCGCGGCCC-CATCGTGAGATTAGGGTGC-AGCA------------------------------------CCAG-GTTAATGGC---CTC--GGGTATGGTAAAAACGCTAGAGATT---------------------GGA-CAATCCGCAGCCAAG-CCTCT-----------------------------TCG-CAA--------------------------------------------------------------------------------------------------GAAGTGGAAGGTTCAGAGACTAAATGGTTGTGGGTGGCAGACGGTTTCGCGAATGTATGAATCAATCATAAACACGTGAAGGAAGTCTGCTGCTTAAGATATAGTCCGAGCCACAGGGAAACCTTGGGAATTTTGGCAACAAACCGAAACAGATAAATAACATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA ; END; [ The following blocks are output data for analysis step 246 ] BEGIN TREES; TITLE Tb5026; LINK TAXA = TaxaForAnalysisStep246; TREE Fig._4L = [&R] ((((Clavicorona_pyxidata,Lentinellus_montanus_242,Lentinellus_montanus_246,Lentinellus_ursinus,Lentinellus_omphalodes),Panellus_stypticus)Homobasidiomycetes,(Ustilago_maydis,Protomyces_inouyei_943),(Dunaliella_parva_943,Dunaliella_salina),Ankistrodesmus_stipitatus),(Mougeotia_caldariorum,Mougeotia_scalaris),(Pneumocystis_carinii_25Sb,Pneumocystis_carinii_25Sa,Pneumocystis_carinii_1506),Dunaliella_parva_1512,Characium_saccatum,Hymenoscyphus_ericae_1506,Protomyces_inouyei_1506,Hymneoscyphus_ericae_25S,Chlorella_luteoviridis); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1383] END; BEGIN TREES; TITLE Tb5026; LINK TAXA = TaxaForAnalysisStep246; TREE Fig._4B = [&R] ((((((((Lentinellus_montanus_242,Lentinellus_montanus_246,Lentinellus_omphalodes),Lentinellus_ursinus),Clavicorona_pyxidata),Panellus_stypticus)Homobasidiomycetes,((Ustilago_maydis,Protomyces_inouyei_943),Ankistrodesmus_stipitatus)),(Dunaliella_parva_943,Dunaliella_salina)),(Dunaliella_parva_1512,Characium_saccatum)),(((Mougeotia_caldariorum,Mougeotia_scalaris),(Pneumocystis_carinii_25Sb,(Pneumocystis_carinii_25Sa,Pneumocystis_carinii_1506))),((Hymenoscyphus_ericae_1506,Protomyces_inouyei_1506),(Hymneoscyphus_ericae_25S,Chlorella_luteoviridis)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1384] END;