#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on October 07, 2026; 16:19 GMT

TreeBASE (cc) 1994-2008

Study reference:
Chawngthu Z. 2019. Ophiocordyceps mizoramensis. Persoonia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S24476]

[ The following blocks are input data for analysis step 24779 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep24779;
        DIMENSIONS NTAX=12;
        TAXLABELS
            'Cordyceps bicephala AJ309365_CHN'
            'Cordyceps nutans AJ536561_CHN'
            'Cordyceps polyarthra AJ536548_CHN'
            'Ophiocordyceps irangiensis GU723766_THA'
            'Ophiocordyceps irangiensis GU723767_THA'
            'Ophiocordyceps mizoramensis MK433638_IND'
            'Ophiocordyceps mizoramensis MK433639_IND'
            'Ophiocordyceps oxycephalo EU573348_THA'
            'Ophiocordyceps sphecocephala GU723779_THA'
            'Ophiocordyceps sphecocephala JN943348_USA'
            Ophiocordyceps_tricentri_AB027376JPN
            'Ophiocordyceps tricentri AB968410_JPN'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M50214]

	TITLE Ophiocordyceps_mizoramensis_12x475;
	LINK TAXA = TaxaForAnalysisStep24779;
	DIMENSIONS NCHAR=475;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -;

MATRIX
[                                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     ]
[                                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
'Cordyceps bicephala AJ309365_CHN'            --CATTACAG--AGAATAAAATCTCTAACCCACTGTGAACTTGTCTAGTAT-------GCCTCGGCGGGTTTTTATATCCGCCAAAGGAACCCAAACT---------TCTTTTTATACAGTCTTCTGAGTCTTTTATAAAAGCCATAAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTCAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTTCGAGCGTCATTTACTGCAATAGACACTATAAATGTGTGTGTCTCTGTTGGGGATGATTGGCCTGTTTTTGGTGGCCAGCCCTTAAAG-TTAGTTGCGGTAGCTACCCCTATACCCTTGTGTAGTACAATCTCC--ACA-----TGTTGGTCTCT--------------------------
'Cordyceps nutans AJ536561_CHN'               ----------------GAACACTCCCTAACCCCTGTGAACCTATACCTATATATGCCTCGGCAGGCTCTGTAAAGAGACTGCCAAAGGAACCTAAACTCTTGTTTTTTATATAACTAGTCTTCTGAGT-GATTTTTATAAATATATAAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACAGTACTAAAGACCCTATATGGTCTTTCTGTTGGAGGCTGGCTCTTA----------GCGGCCACCTCTTAAAT-TTAGTAGCGGCGGTTGCTTTTAATTTCCCCTGCAAAGTAGATTTTTTACTTGCCATGTTGGAAGACTAGCAACCCCCTATAAACAACCTCT-
'Cordyceps polyarthra AJ536548_CHN'           --CATTACAGAGAGTGAAAACTCCCTAACCCACTGTGAACCTATACCTATATATGCCTCGGCAGGCTCTGTAAAGAGACTGCCAAAGGAACCTAAACTCTTGTTTTTTATATAACTAGTCTTCTGAGT-GATTTTTATAAATATATAAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACAGTACTAAAGACCCTATATGGTCTTTCTGTTGGAGGCTGGCTCTTA----------GCGGCCACCTCTTAAAT-TTAGTAGCGGCGGTTGCTTTTAATTTCCCCTGCAAAGTAGATTTTTTACTTGCCATGTTGGAAGACTAGCAACCCCCTATAAACAACCTCT-
'Ophiocordyceps irangiensis GU723766_THA'     CATTATAGAGAGTGAAAAAACTCCCTAACCCACTGTGAACCCATACCTATATATGCCTCGGCAGGCTCTGTAAAGAGACTGCCAAAGGAACCTAAACTCTTGTATTTACC-----TAGTCTTCTGAGTGATTTTATATAAATATATGAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTAGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACAGCACTAAAGACGCTATATGGTCTTTCTGTTGGAGGCTGGCTCCTA----------GCAGCCACCTCT--------------------------------------------------------------------------------------------------
'Ophiocordyceps irangiensis GU723767_THA'     --CATTACAGAGAGTGAAAACTCCCTAACCCACTGTGAACCCATACCTATATATGCCTCGGCAGGCTCTGTAAAGAAACTGCCAAAGGAACCTAAACTCTTGTATTTACC-----TAGTCTTCTGAGTGATTTTATATAAATATATGAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTAGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACAGCACTAAAGACGCTATATGGTCTTTCTGTTGGAGGCTGGCTCCTA----------GCAGCCACCTCT--------------------------------------------------------------------------------------------------
'Ophiocordyceps mizoramensis MK433638_IND'    --CATTACAGAGTGTAAAAACTCCCCAACCCACTGTGAACTGTACCTAT-ATTCTG--CCTCGGCAGGCCTAAACAGCCTGCCAAAGGAACCTAAACTCTCT-ATTTA----TAAAAGTCTTCTG--AGTAAAA-TACAAAATTATCAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACAGTACTAGAGGCGCTAAACGTC--TCTCTGTTGGAGGCTGG-CCTA----------GCGGCCACCTCTGAAATCT-AGTGGCGGCGGCGGCTCT------------------------------------------------------------------------
'Ophiocordyceps mizoramensis MK433639_IND'    --CATTACAGAGTGTAAAAACTCCCCAACCCACTGTGAACTGTACCTAT-ATTCTG--CCTCGGCAGGCCTAAACAGCCTGCCAAAGGAACCTAAACTCTCT-ATTTA----TAAAAGTCTTCTG--AGTAAAA-TACAAAATTATCAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACAGTACTAGAGGCGCTAAACGTC--TCTCTGTTGGAGGCTGG-CCTA----------GCGGCCACCTCTGAAATCT-AGTGGCGGCGGCGGCTCT------------------------------------------------------------------------
'Ophiocordyceps oxycephalo EU573348_THA'      --CATTACAGAGAGTGAAAACTCCCTAACCCACTGTGAACCTATACCTATATATGCCTCGGCAGGCTCTGTAAAGAGACTGCCAAAGGAACCTAAAACTCT--TGTTTTTATAACTAGTCTTCTGAGT-GATTTTTATAAATATATAAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACAGTACTAAAGACCCTATATGGTCTTTCTGTTGGAGGCTGGCTCTTA----------GCGGCCACCTCTTAAAT-TTAGTAGCGGCGGTTGCTTTTAATTTCCCCTGCAAAGTAGATTTTTTACTTGCAATGTTGGAAGACTAGCAACCCCCTATAAACAACCTCTT
'Ophiocordyceps sphecocephala GU723779_THA'   --CATTATAGAGTGTAAAAACTCCCTAACCCACTGTGAACTATACCTA-TATTCTG--CCTCGGCAGGTCTTTTGGGCCTGCCAAAGGAACCTAAACTCTCT-ATATATTTATACTAGTCTTCTG--AGTATGATACCAAATATATCAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACTGTACTAGAGGCGCTATATATGTCTCTCTGTTGGAGGCTGG-CCTA----------GCGGCCACCTCTTAAAATCGAGTGGCGGCGGTTGCTCT------------------------------------------------------------------------
'Ophiocordyceps sphecocephala JN943348_USA'   --CATTACAGAGTGTAAAAACTCCCTAACCCACTGTGAACTATACCTATTATTCTG--CCTCGGCAGGTCTTTTGGGCCTGCCAAAGGAACCTAAACTCTCT-ATATATTTATACTAGTCTTCTG--AGTATGATACCAAATATATCAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTTAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGCTATTCTAGCAGGCATGCCTGTCCGAACGTCATTTACTGTACTAGAGGCGCTATATATGTCTCTCTGTTGGAGGCTGG-CCTA----------GCGGCCACCTCTTAAAATCCAGTGGCGGCGGTTGCTCT------------------------------------------------------------------------
Ophiocordyceps_tricentri_AB027376JPN          --CATTACAGAGAGTGAAATCTCC-CAACCCACTGTGAACTGTACCTATTT-------TGCCTCGGCAGGCCTAGTGCCTGCCAAAGGAACCCAAACT---------CGTTATAATAGTCTTCT--GAGTAATTATAAGAAAAAATCAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTCAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGTTATTCCAGCAGGCATGCCTGTCCGAGCGTTATTTACAGTACTAAAGACACTACATGTGCCTTTGATTGGAGATTAGCTTAGC------------GGCTACCTCTTAAAT-TCAGTAGCGGCGGTTGCTTCTATTCCCTTGTGAAGTAATAATTCACAACGTGGAGGATTAGTAGCTAGTCTGTACCCCTAAAACCCTCT---
'Ophiocordyceps tricentri AB968410_JPN'       --CATTACAGAGAGTGAAATCTCC-CAACCCACTGTGAACTGTACCTATTT-------TGCCTCGGCAGGCCTAGTGCCTGCCAAAGGAACCCAAACT---------CGTTATTATATAGTCTTCTGAGTAATTA-TAAGAAAAATCAAAACTTTTAGCAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGCGAATTGCAGATTTCAGTGAGTCATCGAGTTTTTGAACGCATATTGCGCCTGCTGGTTATTCCAGCAGGCATGCCTGTCCGAGCGTTATTTACAGTACTAAAGACACTATATGTGCCTTTGATTGGAGATTAGCTTAGC------------GGCTACCTCTTAAAT-TCAGTAGCGGCGGTTGCTTCTATTCCCTTGTGAAGTAATAATTCACAACGTGGAGGATTAGTAGCTAGTCTGTACCCCTAAAACCCTCT---
;
END;

[ The following blocks are output data for analysis step 24779 ]
BEGIN TREES;
      TITLE Ophiocordyceps_mizoramensis_Ml_analysis_using_Mr_bayes;
      LINK TAXA = TaxaForAnalysisStep24779;
      TREE mintr = [&R] ('Cordyceps bicephala AJ309365_CHN',((Ophiocordyceps_tricentri_AB027376JPN,'Ophiocordyceps tricentri AB968410_JPN'),((('Ophiocordyceps mizoramensis MK433638_IND','Ophiocordyceps mizoramensis MK433639_IND'),('Ophiocordyceps sphecocephala JN943348_USA','Ophiocordyceps sphecocephala GU723779_THA')),(('Ophiocordyceps irangiensis GU723766_THA','Ophiocordyceps irangiensis GU723767_THA'),('Ophiocordyceps oxycephalo EU573348_THA',('Cordyceps nutans AJ536561_CHN','Cordyceps polyarthra AJ536548_CHN'))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr118236]


END;