#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 8:10 GMT TreeBASE (cc) 1994-2008 Study reference: Frankiewicz K., Oskolski A., Banasiak L., Fernandes F., Reduron J., Reyes-betancort J.A., Szczeparska L., Al-sarraf M., Baczynski J., & Spalik K. 2020. Parallel evolution of arborescent carrots (Daucus) in Macaronesia. American Journal of Botany, 107(3): 1-19. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S24902] [ The following blocks are input data for analysis step 25177 ] BEGIN TAXA; TITLE TaxaForAnalysisStep25177; DIMENSIONS NTAX=60; TAXLABELS Anthriscus_sylvestris Daucus_annuus Daucus_arcanus Daucus_aureus Daucus_bicolor Daucus_bischoffii Daucus_carota_subsp_azoricus Daucus_carota_subsp_carota Daucus_carota_subsp_gummifer Daucus_carota_subsp_halophilus Daucus_conchitae Daucus_decipiens Daucus_dellacellae Daucus_durieua Daucus_edulis Daucus_elegans Daucus_glochidiatus Daucus_guttatus Daucus_incognitus Daucus_insularis Daucus_involucratus Daucus_littoralis Daucus_mirabilis Daucus_montanus Daucus_muricatus Daucus_pumilus Daucus_pusillus Daucus_rouyi Daucus_setifolius Daucus_syrticus Daucus_tenuisectus Daucus_tenuissimus Ekimia_bornmuelleri Ekimia_petrophila Ferula_communis Glaucosciadium_cordifolium Laser_affine Laser_archangelica Laser_carduchorum Laser_stevenii Laser_trilobum Laserpitium_gallicum Laserpitium_halleri Laserpitium_krapfii Laserpitium_latifolium Laserpitium_peucedanoides Laserpitium_pseudomeum Orlaya_grandiflora Siler_montanum Silphiodaucus_hispidus Silphiodaucus_prutenicus Thapsia_eliasii Thapsia_garganica Thapsia_gummifera Thapsia_meoides Thapsia_nestleri Thapsia_tenuifolia Thapsia_thapsioides Thapsia_transtagana Thapsia_villosa ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M51396] TITLE Daucus_Habit_and_anatomy_matrix; LINK TAXA = TaxaForAnalysisStep25177; DIMENSIONS NCHAR=10; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2" MISSING=? GAP= -; CHARSTATELABELS 1 Reproductive_strategy / monocarpic polycarpic, 2 Lifespan / annual biennial_to_triennial perennial, 3 Raunkiaer_life_form / therophyte hemicryptophyte 'chamaephyte/rosette plant', 4 Growth_rings / absent only_one present, 5 Wood_porosity / 'semi-ring-porous' 'diffuse-porous', 6 Scalariform_pitting_common / absent present, 7 Pervasive_parenchyma / absent present, 8 Libriform_fibers / absent present, 9 Rays_composed_of_mostly_upright_and_square_cells / true false, 10 Ray_formation / present_in_early_wood delayed_or_rays_absent, ; MATRIX Anthriscus_sylvestris 121??????? Daucus_annuus 000??????? Daucus_arcanus 000??????? Daucus_aureus 011??????? Daucus_bicolor 000??????? Daucus_bischoffii 0220100100 Daucus_carota_subsp_azoricus 021??????? Daucus_carota_subsp_carota 0110100100 Daucus_carota_subsp_gummifer 0111?10100 Daucus_carota_subsp_halophilus 011??????? Daucus_conchitae 000??????? Daucus_decipiens 0220100110 Daucus_dellacellae 1210111100 Daucus_durieua 000??????? Daucus_edulis 12201111{01}0 Daucus_elegans 0120100101 Daucus_glochidiatus 000??????? Daucus_guttatus 000??????? Daucus_incognitus 000??????? Daucus_insularis 0210100100 Daucus_involucratus 000??????? Daucus_littoralis 000??????? Daucus_mirabilis 121??????? Daucus_montanus 000??????? Daucus_muricatus 000??????? Daucus_pumilus 0001?11100 Daucus_pusillus 000??????? Daucus_rouyi 1210100100 Daucus_setifolius 121??????? Daucus_syrticus 000??????? Daucus_tenuisectus 000??????? Daucus_tenuissimus 0220100100 Ekimia_bornmuelleri 121??????? Ekimia_petrophila 121??????? Ferula_communis 1212011010 Glaucosciadium_cordifolium 121??????? Laser_affine 121??????? Laser_archangelica 121??????? Laser_carduchorum 121??????? Laser_stevenii 121??????? Laser_trilobum 121??????? Laserpitium_gallicum 12120111?0 Laserpitium_halleri 1210?11000 Laserpitium_krapfii 121??????? Laserpitium_latifolium 1210011100 Laserpitium_peucedanoides 1210?111?0 Laserpitium_pseudomeum 121??????? Orlaya_grandiflora 0002000100 Siler_montanum 1210?110?0 Silphiodaucus_hispidus 011??????? Silphiodaucus_prutenicus 0110111100 Thapsia_eliasii 121??????? Thapsia_garganica 1210?11000 Thapsia_gummifera 121??????? Thapsia_meoides 121??????? Thapsia_nestleri 121??????? Thapsia_tenuifolia 121??????? Thapsia_thapsioides 121??????? Thapsia_transtagana 121??????? Thapsia_villosa 1210?11000 ; END; [ The following blocks are output data for analysis step 25177 ] BEGIN TREES; TITLE Daucus_Dated_Phylogeny; LINK TAXA = TaxaForAnalysisStep25177; TREE TREE1 = [&R] (((((Ekimia_petrophila:12.033286785585052,Ekimia_bornmuelleri:12.033286785585052):8.867345223233833,(((Thapsia_transtagana:4.9890328609194,Thapsia_garganica:4.9890328609194):7.971840600606301,((Thapsia_thapsioides:3.3929927601821817,Thapsia_meoides:3.3929927601821817):4.001501177578236,(Thapsia_gummifera:5.5210405225899795,Thapsia_tenuifolia:5.5210405225899795):1.873453415170438):5.566379523765283):2.9964043192161007,(Thapsia_villosa:14.363739701135525,(Thapsia_eliasii:4.729749211780652,Thapsia_nestleri:4.729749211780652):9.633990489354952):1.5935380796062972):4.943354228076885):0.9047570579625663,((Laserpitium_gallicum:7.595192625496747,Laserpitium_halleri:7.595192625496747):8.866594804684553,(Laserpitium_latifolium:8.801648240185601,(Laserpitium_krapfii:3.2055383250291776,Laserpitium_peucedanoides:3.2055383250291776):5.596109915156424):7.660139189995698):5.343601636599953):1.0338831139530456,(((Siler_montanum:14.665927101308396,Laserpitium_pseudomeum:14.6659271013084):4.467297243592638,(((Laser_stevenii:11.523176689836381,Laser_trilobum:11.523176689836301):1.3897964937794995,(Laser_archangelica:8.98108444132125,Laser_affine:8.98108444132125):3.93188874229455):2.9190770476731007,Laser_carduchorum:15.832050231289097):3.3011741136120367):1.3770540004980596,(((Silphiodaucus_hispidus:3.410280102257307,Silphiodaucus_prutenicus:3.410280102257307):9.793387681919793,((Daucus_incognitus:6.560957406823549,(((Daucus_involucratus:1.5922786287224966,Daucus_conchitae:1.5922786287224966):2.071485313892497,((Daucus_pusillus:0.39537744683310905,Daucus_arcanus:0.39537744683310905):2.96669850395231,((Daucus_bicolor:1.9625307019484506,Daucus_littoralis:1.9625307019484506):1.1536172252817476,Daucus_guttatus:3.116147927230191):0.24592802355522814):0.30168799182957073):0.6787212817732016,(Daucus_durieua:3.493175802719101,(Daucus_montanus:1.7575584495735477,Daucus_glochidiatus:1.7575584495735477):1.7356173531455497):0.8493094216691013):2.218472182435347):3.8173980022801555,(((Daucus_tenuisectus:6.6792875785072745,Daucus_muricatus:6.6792875785072745):1.3204408214973657,(Daucus_setifolius:7.421042412494599,(Daucus_aureus:6.683735451682894,((Daucus_mirabilis:4.388671644579448,Daucus_dellacellae:4.388671644579448):1.1766529378827517,(((Daucus_syrticus:1.8471850000045968,(((Daucus_carota_subsp_halophilus:0.054013894715581046,Daucus_carota_subsp_azoricus:0.054013894715581046):0.29340765820785997,(Daucus_carota_subsp_carota:0.17958711049431209,Daucus_carota_subsp_gummifer:0.17958711049430853):0.16783444242913959):0.22580120829404393,(Daucus_insularis:0.2811277302927966,(Daucus_bischoffii:0.1299218892301326,(Daucus_tenuissimus:0.06901839654029907,Daucus_annuus:0.06901839654030262):0.060903492689829974):0.15120584106264623):0.29209503092470257):1.2739622387870977):1.159730039427803,Daucus_rouyi:3.0069150394324):1.1236739558727464,Daucus_pumilus:4.130588995305146):1.4347355871570535):1.118410869220698):0.7373069608117016):0.578685987510041):0.5477829803506662,(Daucus_elegans:7.767338955842346,(Daucus_edulis:3.5419144467296473,Daucus_decipiens:3.5419144467296473):4.2254245091127025):0.7801724245129567):1.8308440287483947):2.8253123750732954):6.2013780777463055,Orlaya_grandiflora:19.405045861923405):1.1052324834755929):2.3289938353353996):0.6614016319759557,((Glaucosciadium_cordifolium:12.169338255605052,Anthriscus_sylvestris:12.169338255605052):2.718045130110953,Ferula_communis:14.887383385716003):8.61329042699445); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr119314] END;