#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 01, 2025; 7:58 GMT TreeBASE (cc) 1994-2008 Study reference: Du M., Schardl C.L., Nuckles E., & Vaillancourt L. 2005. Using Mating-Type Gene Sequences for Improved Phylogenetic Resolution of Colletotrichum Species Complexes. Mycologia, 97: 641-658. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1356] [ The following blocks are input data for analysis step 2540 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2540; DIMENSIONS NTAX=58; TAXLABELS Colletotrichum_acutatum_1.4.51 Colletotrichum_acutatum_1.4.57 Colletotrichum_acutatum_2.6.23 Colletotrichum_acutatum_2.7.15 Colletotrichum_acutatum_2.7.3 Colletotrichum_acutatum_216 Colletotrichum_acutatum_5.7.52 'Colletotrichum acutatum ALM-9US' 'Colletotrichum acutatum ALM-BZR-9A' 'Colletotrichum acutatum ALM-IKS-7Q' 'Colletotrichum acutatum ALM-KSH-10' 'Colletotrichum acutatum ALM-NRB-30K' 'Colletotrichum acutatum ANE-25A' 'Colletotrichum acutatum ANE-27A' 'Colletotrichum acutatum ANE-4' 'Colletotrichum acutatum ANE-NL12' Colletotrichum_acutatum_APPY3 Colletotrichum_acutatum_ATCC28992 Colletotrichum_acutatum_Goff99 Colletotrichum_acutatum_TUT137A Colletotrichum_acutatum_TUT5954 Colletotrichum_coccodes_155 'Colletotrichum fragariae CF-63' 'Colletotrichum fragariae CF-75' Colletotrichum_gloeosporioides_1362 Colletotrichum_gloeosporioides_2489 'Colletotrichum gloeosporioides 38-1D' Colletotrichum_gloeosporioides_APPR1 Colletotrichum_gloeosporioides_APPY8 'Colletotrichum gloeosporioides AVO-6' 'Colletotrichum gloeosporioides ArkP-1' 'Colletotrichum gloeosporioides CG-162' Colletotrichum_gloeosporioides_Castigo3 Colletotrichum_gloeosporioides_FA16 Colletotrichum_gloeosporioides_NC329 Colletotrichum_graminicola_99358 Colletotrichum_graminicola_99365 Colletotrichum_graminicola_99369 Colletotrichum_graminicola_99375 Colletotrichum_graminicola_BG1.001 Colletotrichum_graminicola_Cg104 Colletotrichum_graminicola_CgAurora Colletotrichum_graminicola_KY1 Colletotrichum_graminicola_M1.001 Colletotrichum_graminicola_M5.001 Colletotrichum_graminicola_OG1.001 Colletotrichum_graminicola_RG1.001 Colletotrichum_magna_L2.5 Colletotrichum_musae_927 Colletotrichum_sublineolum_JG1.001 Colletotrichum_sublineolum_S1.001 Colletotrichum_sublineolum_S12.001 Colletotrichum_sublineolum_S17.001 Colletotrichum_sublineolum_S19.001 Colletotrichum_sublineolum_S26.001 Colletotrichum_sublineolum_S3.001 Colletotrichum_sublineolum_S7.001 Colletotrichum_sublineolum_W1.001 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1028] TITLE 'Colletotrichum MAT1-2 HMG'; LINK TAXA = TaxaForAnalysisStep2540; DIMENSIONS NCHAR=225; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ] [ . . . . . . . . . . . . . . . . . . . . . . ] Colletotrichum_acutatum_1.4.51 CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACAGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_1.4.57 CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACAGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_2.6.23 CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_2.7.15 CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACAGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_2.7.3 CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACTGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_216 CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_5.7.52 CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACAGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ALM-9US' CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ALM-BZR-9A' CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAATCCTCAACTTCAGAACAATGATATTTGTGAGTGCCTCAAGATCAATAGCCCTACA--CTATCTCGCTG--ACCTTCGAGAAGCCGGAATCCTAGGCAAAGCGTGGAACAACGAGTCTCACGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ALM-IKS-7Q' CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAATCCTCAACTTCAGAACAATGATATTTGTGAGTGCCTCAAGATCAATAGCCCTACA--CTATCTCGCTG--ACCTTCGAGAAGCCGGAATCCTAGGCAAAGCGTGGAACAACGAGTCTCACGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ALM-KSH-10' CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAATCCTCAACTTCAGAACAATGATATTTGTGAGTGCCTCAAGATCAATAGCCCTACA--CTATCTCGCTG--ACCTTCGAGAAGCCGGAATCCTAGGCAAAGCGTGGAACAACGAGTCTCACGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ALM-NRB-30K' CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAATCCTCAACTTCAGAACAATGATATTTGTGAGTGCCTCAAGATCAATAGCCCTACA--CTATCTCGCTG--ACCTTCGAGAAGCCGGAATCCTAGGCAAAGCGTGGAACAACGAGTCTCACGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ANE-25A' CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ANE-27A' CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ANE-4' CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACTGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA 'Colletotrichum acutatum ANE-NL12' CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACTGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_APPY3 CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACAGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_ATCC28992 CATATATCCTCTACCGCAGCGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAGCTTCAGAACAATGATATCTGTGAGTGACTGAAGTCCAACTGCATTACA--CCATCTTGCTG--ACCTTTGAAAAGCCGGGATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCTAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_Goff99 CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_TUT137A CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_acutatum_TUT5954 CATATATCCTCTACCGCAGTGACTACCAAGCCCAAATCAAGCAGATGAACCCTCAACTTCAGAACAATGATATCTGTAGGTGGCTGAAGTTCAACAGCCCTACA--CCATCTCGCTA--ACCTTTGAAAAGCCGGAATCCTAGGCAAAGCTTGGAACAACGAGTCTCATGAAGTCCGCGAAAGATACAAGGCTCTCGCGAAAGCCTACAAGGAGCGCCACAACAA Colletotrichum_coccodes_155 CGTACATTCTCTACCGAAGAGACTACCAAGCCCAGATCAAGCAGATGAACCCCCAACTTCAGAACAACGACATTTGTAAGCATGCAATCCTATCTTTCCCCGAG--TGCCGCCGCTG--ACCTCTGTATAGCTGGAATCCTGGGCAAGGCCTGGAATACTGAGTCCCATGAGGTTCAGGAGAGGTACAAGTCCCTCGCAAAAGCGTACAAGGAGCGCCACCACAA 'Colletotrichum fragariae CF-63' CGTACATTCTCTACCGAAAAGATCGCCATGCAATCATGAAGCAGGAAAATAGTCACCTCAGCAATAACGATATTTGTGAGCACCTTGACTTGACTCCCATCGA-----AAACGGGTACTGACCAACAACAGCCATTAGCTTGGGCAAGAAATGGAATAGCGAATCGCCAGCCGTGCGCCAGAAATATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT 'Colletotrichum fragariae CF-75' CGTACATTCTCTACCGAAAAGATCGCCATGCAATCATGAAGCAGGAAAATAGTCACCTCAGCAATAACGATATTTGTGAGCACCTTGACTTGACTCCCATCGA-----AAACGGGTACTGACCAACAACAGCCATTAGCTTGGGCAAGAAATGGAATAGCGAATCGCCAGCCGTGCGCCAGAAATATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_gloeosporioides_1362 CGTACATTCTCTACCGAAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTGCCTTAACTTGATTTCCCCCGG-----GAGCAGGTGCTGACCAACAACAGCCATTAGCCTAGGCAAGAAATGGAACAGCGAATCACCAGCAGTGCGCCAGAAATACACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_gloeosporioides_2489 CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGCCACCTAAGCAACAACGATATTTGTGAGTACTTTGAGTCGATTCTCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCTTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAATATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT 'Colletotrichum gloeosporioides 38-1D' CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTACTTTGACTTGGTTCCCCTCGG-----GAACCGGCGCTGACCAACAACAGCCATTAGCCTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAGTATACCGAGCTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_gloeosporioides_APPR1 CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGCCACCTAAGCAACAACGATATTTGTGAGTACTTTGAGTCGATTCTCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCTTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAATATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_gloeosporioides_APPY8 CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGCCACCTAAGCAACAACGATATTTGTGAGTACTTTGAGTCGATTCTCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCTTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAATATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT 'Colletotrichum gloeosporioides AVO-6' CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTACTTTGACTTGGTTCCCCTCGG-----GAACCGGCGCTGACCAACAACAGCCATTAGCCTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAGTATACCGAGCTTGCAAAGATGCACAAGGAGCGCCTCTTGAT 'Colletotrichum gloeosporioides ArkP-1' CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTACTTTGACTTGGTTCCCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCCTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAGTATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT 'Colletotrichum gloeosporioides CG-162' CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTACTTTGACTTGGTTCCCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCCTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAGTATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_gloeosporioides_Castigo3 CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTACTTTGACTTGGTTCCCCTCGG-----GAACCGGCGCTGACCAACAACAGCCATTAGCCTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAGTATACCGAGCTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_gloeosporioides_FA16 CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTACTTTGACTTGGTTCCCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCCTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAGTATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_gloeosporioides_NC329 CGTACATTCTCTACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGCCACCTAAGCAACAACGATATTTGTGAGTACTTTGAGTCGATTCTCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCTTAGGCAAGAAATGGAACAGCGAATCACCAGCCGTGCGCCAGAAATATACCGAACTTGCAAAGATGCACAAGGAGCGCCTCTTGAT Colletotrichum_graminicola_99358 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGCATCTGTGAGTTTACAAGCATGGCGTCCTTCAACTCCCC-ATCACTG--ACCTTTGCATAGCGCGGATCCTGGGTAAAGCCTGGAATGCCGAGTCCCACGAGGTTCGAGAAAAGTACAGGGCACTCGCAAAAGCATACAAAGAGCGCCATAACAA Colletotrichum_graminicola_99365 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGCATCTGTGAGTTTACAAGCATGGCGTCCTTCAACTCCCC-ATCACTG--ACCTTTGCATAGCGCGGATCCTGGGTAAAGCCTGGAATGCCGAGTCCCACGAGGTTCGAGAAAAGTACAGGGCACTCGCAAAAGCATACAAAGAGCGCCATAACAA Colletotrichum_graminicola_99369 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGCATCTGTGAGTTTACAAGCATGGCGTCCTTCAACTCCCC-ATCACTG--ACCTTTGCATAGCGCGGATCCTGGGTAAAGCCTGGAATGCCGAGTCCCACGAGGTTCGAGAAAAGTACAGGGCACTCGCAAAAGCATACAAAGAGCGCCATAACAA Colletotrichum_graminicola_99375 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGCATCTGTGAGTTTACAAGCATGGCGTCCTTCAACTCCCC-ATCACTG--ACCTTTGCATAGCGCGGATCCTGGGTAAAGCCTGGAATGCCGAGTCCCACGAGGTTCGAGAAAAGTACAGGGCACTCGCAAAAGCATACAAAGAGCGCCATAACAA Colletotrichum_graminicola_BG1.001 CGTATATTCTCTACCGCAAGGACCGTCAAGCGCACGTCAAGCTTATGGATCCTCAGATCCAGAACAAAGGCATCTGTGAGTTTACGAGCATGACTTACTTCAACTTCCC-ATCGCTG--ACCTTTGCGCAGCACAACTTCTAGGCAAAGCCTGGAACGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTACAAAGAGCGCCATAACAA Colletotrichum_graminicola_Cg104 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATTCAGAACAAAGGCATCTGTGAGTTTGCAAGCATAGCTTCCTTCGACTTCCC-ATCGCTG--ACCCTTTCACAGCGCAGCTTCTGGGTAAAGCCTGGAATGCTGAGTCCCATGAGGTTCGGGAAAAATACAGGGCACTCGCAAAAGCGTACAAAGAGCGCCATAACAA Colletotrichum_graminicola_CgAurora CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATTCAGAACAAAGGCATCTGTGAGTTTGCAAGCATAGCTTCCTTCGACTTCCC-ATCGCTG--ACCCTTTCACAGCGCAGCTTCTGGGTAAAGCCTGGAATGCTGAGTCCCATGAGGTTCGGGAAAAATACAGGGCACTCGCAAAAGCGTACAAAGAGCGCCATAACAA Colletotrichum_graminicola_KY1 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATTCAGAACAAAGGCATCTGTGAGTTTGCAAGCATAGCTTCCTTCGACTTCCC-ATCGCTG--ACCCTTTCACAGCGCAGCTTCTGGGTAAAGCCTGGAATGCTGAGTCCCATGAGGTTCGGGAAAAATACAGGGCACTCGCAAAAGCGTACAAAGAGCGCCATAACAA Colletotrichum_graminicola_M1.001 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATTCAGAACAAAGGCATCTGTGAGTTTGCAAGCATAGCTTCCTTCGACTTCCC-ATCGCTG--ACCCTTTCACAGCGCAGCTTCTGGGTAAAGCCTGGAATGCTGAGTCCCATGAGGTTCGGGAAAAATACAGGGCACTCGCAAAAGCGTACAAAGAGCGCCATAACAA Colletotrichum_graminicola_M5.001 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATTCAGAACAAAGGCATCTGTGAGTTTGCAAGCATAGCTTCCTTCGACTTCCC-ATCGCTG--ACCCTTTCACAGCGCAGCTTCTGGGTAAAGCCTGGAATGCTGAGTCCCATGAGGTTCGGGAAAAATACAGGGCACTCGCAAAAGCGTACAAAGAGCGCCATAACAA Colletotrichum_graminicola_OG1.001 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAAATGGATCCTCAGATCCAGAACAAAGGCATCTGTGAGTTTTCAAGCATGGCTTCCTTCAACTCCCT-ATCACTG--ACCTTTGCATAGCGCGGATTCTGGGTAAAGCCTGGAACGCCGAGTCCCACGAGGTTCGAGAAAAATACAGGGCACTCGCAAAAGCATACAAAGAGCGCCATAACAA Colletotrichum_graminicola_RG1.001 CGTATATTCTCTACCGCAAGGATCGCCAAGCGCATGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGCATCTGTGAGTTTACAAGCATGGCTTTCTTCAAATCCCC-ATCACTG--ACCTTTGCATAGCGCGGATCCTGGGTAAAGCCTGGAATGCCGAGTCCCACGAGGTTCGAGAAAAGTACAGGGCGCTCGCAAAAGCATACAAAGAGCGCCATAACAA Colletotrichum_magna_L2.5 CGTACATTCTCTACCGGAAAGACCACTGCGCCAAGTTGAAGAAACTCAACCCCCGCATCTCCAACAACGATATATGTGAGTAGATGGACTCCCCCTTTCTGAGTGTCGACTCGGATTCTAACCTGATACAGCTTGCGTCTTGGGCAAGGCTTGGAACAACGAGTCGCACGAAGTCCGCGAGAGATATACGGAGCTCGCTAGGTTGCACAAGGAACGCCTTCTGAT Colletotrichum_musae_927 CGTACATTCTATACCGCAAAGATCGCCATGCCACCATGAAGCAGGAAAACAGTCACCTAAGCAACAACGATATTTGTGAGTACTTTGACTTGGTTCCCCTCGG-----GAACAGGCGCTGACCAACAACAGCCATTAGCTTAGGCAAGAAGTGGAACAGTGAATCACCAGCCGTGCGCCAGAAGTATACCGAACTTGCAAAGATACACAAGGAGCGCCTCTTGAT Colletotrichum_sublineolum_JG1.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCATCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_S1.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCATCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_S12.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCATCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_S17.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCATCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_S19.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCGTCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_S26.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCGTCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_S3.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCATCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_S7.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCGTCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA Colletotrichum_sublineolum_W1.001 CGTATATTCTCTACCGCAAGGACCGCCAAGCGCAAGTCAAGCAGATGGATCCTCAGATCCAGAACAAAGGTATCTGTGAGTATACAAGCATGACTTCCTGCGACTTCCCCATCGCTG--ACCTTTGCACAGCGCAACTTCTGGGTAAAGCATGGAATGCCGAGTCCCACGAGGTTCGGGAAAAATATAGGGCACTCGCAAAAGCGTATAAAGAGCGCCATAACAA ; END; BEGIN SETS; CHARSET ivs2 (CHARACTERS = 'Colletotrichum MAT1-2 HMG') = 76; CHARSET EXN3 (CHARACTERS = 'Colletotrichum MAT1-2 HMG') = 132; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'Colletotrichum MAT1-2 HMG') = N: 1-225; CODONPOSSET CodonPositions (CHARACTERS = 'Colletotrichum MAT1-2 HMG') = N: 1-225; END; [ The following blocks are output data for analysis step 2540 ] BEGIN TREES; TITLE Tb7315; LINK TAXA = TaxaForAnalysisStep2540; TREE Fig._4 = [&R] (((((((('Colletotrichum gloeosporioides 38-1D','Colletotrichum gloeosporioides AVO-6',Colletotrichum_gloeosporioides_Castigo3),'Colletotrichum gloeosporioides ArkP-1','Colletotrichum gloeosporioides CG-162',Colletotrichum_gloeosporioides_FA16),Colletotrichum_musae_927),(Colletotrichum_gloeosporioides_2489,Colletotrichum_gloeosporioides_APPR1,Colletotrichum_gloeosporioides_APPY8,Colletotrichum_gloeosporioides_NC329)),('Colletotrichum fragariae CF-63','Colletotrichum fragariae CF-75')Colletotrichum_fragariae),Colletotrichum_gloeosporioides_1362),Colletotrichum_magna_L2.5),(Colletotrichum_coccodes_155,(((Colletotrichum_acutatum_216,'Colletotrichum acutatum ANE-27A',Colletotrichum_acutatum_TUT5954,Colletotrichum_acutatum_2.6.23,Colletotrichum_acutatum_Goff99,'Colletotrichum acutatum ALM-9US',Colletotrichum_acutatum_TUT137A,'Colletotrichum acutatum ANE-25A'),((Colletotrichum_acutatum_2.7.3,'Colletotrichum acutatum ANE-4','Colletotrichum acutatum ANE-NL12',Colletotrichum_acutatum_ATCC28992),Colletotrichum_acutatum_1.4.51,Colletotrichum_acutatum_1.4.57,Colletotrichum_acutatum_2.7.15,Colletotrichum_acutatum_5.7.52,Colletotrichum_acutatum_APPY3),('Colletotrichum acutatum ALM-BZR-9A','Colletotrichum acutatum ALM-IKS-7Q','Colletotrichum acutatum ALM-KSH-10','Colletotrichum acutatum ALM-NRB-30K')Colletotrichum_acutatum_gray_morphotype)Colletotrichum_acutatum,(((Colletotrichum_graminicola_99358,Colletotrichum_graminicola_99365,Colletotrichum_graminicola_99369,Colletotrichum_graminicola_99375),(Colletotrichum_graminicola_OG1.001,((Colletotrichum_graminicola_Cg104,Colletotrichum_graminicola_KY1,Colletotrichum_graminicola_M1.001,Colletotrichum_graminicola_M5.001,Colletotrichum_graminicola_CgAurora)Colletotrichum_graminicola_from_maise,(Colletotrichum_graminicola_BG1.001,(Colletotrichum_sublineolum_JG1.001,Colletotrichum_sublineolum_S17.001,Colletotrichum_sublineolum_W1.001,Colletotrichum_sublineolum_S1.001,Colletotrichum_sublineolum_S3.001,Colletotrichum_sublineolum_S12.001,(Colletotrichum_sublineolum_S7.001,Colletotrichum_sublineolum_S19.001,Colletotrichum_sublineolum_S26.001))Colletotrichum_sublineolum)))),Colletotrichum_graminicola_RG1.001)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2305] END;