#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 23, 2026; 20:06 GMT

TreeBASE (cc) 1994-2008

Study reference:
Vignatti P., Gonzalez M.E., Jofre E., Bolivar-anillo H.J., Moraga J., Viaud M., Gonzalez-collado
I., & Pieckenstain F.L. 2019. Botrydial confers Botrytis cinerea
the ability to antagonize soil and phyllospheric bacteria. Fungal Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S24543]

[ The following blocks are input data for analysis step 25941 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep25941;
        DIMENSIONS NTAX=11;
        TAXLABELS
            BT1L_MH750314
            MPe3L_MH760410
            Pseudomonas_azotoformans_IAM_1603_T_AB039411
            Pseudomonas_brenneri_DSM_15294_T_JN589902
            Pseudomonas_gessardii_CIP_105469_T_FN554186
            Pseudomonas_granadensis_F_278770_T_HG764749
            Pseudomonas_migulae_CCUG_43165_T_FN554204
            Pseudomonas_panacis_CIP_108524_T_FN554214
            Pseudomonas_proteolytica_CIP_108464_T_FN554220
            Pseudomonas_putida_NBRC_14164_T_AP013070
            Pseudomonas_yamanorum_8H1_T_EU557346
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M50359]

	TITLE Pseudomonas_spp._gyrB;
	LINK TAXA = TaxaForAnalysisStep25941;
	DIMENSIONS NCHAR=516;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      ]
[                                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
BT1L_MH750314                                      GCCAAGCGGATTCGTGAACTGTCTTTCCTGAACTCCGGTGTGGGTATCGTCCTCAAGGACGAACGCAGCGGCAAGGAAGAGCTGTTCAAGTACGAAGGCGGCCTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACCGCGGTCAAT---CAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTAGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCTCAGCGCGATGGCGGTACTCACCTGGTGGGTTTCCGTTCTGCACTGACGCGTAACCTGAACACCTACATCGAAGCGGAAGGCCTGGCGAAGAAACACAAAGTCGCCACCACCGGTGACGATGCCCGCGAAGGCCTGACCGCCATTATCTCGGTCAAGGTTCCGGATCCGAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTGTCCTCCGAAGTGAAGACAGCGGTCGAACAGGAAATGGGCAAGTACTTCTCC
MPe3L_MH760410                                     GCCAAGCGGATTCGTGAACTGTCTTTCCTGAACTCCGGTGTGGGTATCGTCCTCAAGGACGAACGCAGCGGCAAGGAAGAGCTGTTCAAGTACGAAGGCGGCCTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACCGCGGTCAAT---CAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTAGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCTCAGCGCGATGGCGGTACTCACCTGGTGGGTTTCCGTTCTGCACTGACGCGTAACCTGAACACCTACATCGAAGCGGAAGGCCTGGCGAAGAAACACAAAGTCGCCACCACCGGTGACGATGCCCGCGAAGGCCTGACCGCCATTATCTCGGTCAAGGTTCCGGATCCGAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTGTCCTCCGAAGTGAAGACAGCGGTCGAACAGGAAATGGGCAAGTACTTCTCC
Pseudomonas_azotoformans_IAM_1603_T_AB039411       GCCAAGCGTATTCGTGAACTGTCGTTCCTTAACTCCGGCGTGGGTATCGTCCTCAAGGACGAGCGCAGCGGCAAGGAAGAGCTGTTCAAGTACGAAGGCGGCTTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACTGCGGTCAAC---CAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCTCAGCGCGACGGCGGTACTCACTTGGTGGGTTTCCGTTCCGCACTGACGCGTAACCTGAACACCTACATCGAAGCCGAAGGTTTGGCCAAGAAGCATAAAGTCGCCACTACCGGTGACGATGCGCGCGAAGGCCTGACTGCGATTATCTCGGTGAAAGTGCCGGATCCGAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAGACCGCAGTGGAACAGGAGATGGGCAAATACTTCTCC
Pseudomonas_brenneri_DSM_15294_T_JN589902          GCCAAGCGGATTCGTGAACTGTCCTTCCTCAACTCCGGTGTGGGTATCGTCCTCAAGGACGAGCGCAGCGGCAAGGAAGAACTGTTCAAGTACGAAGGCGGCCTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACTGCGGTCAAC---CAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCTCAGCGCGATGGCGGTACTCACCTGGTGGGTTTCCGTTCCGCCCTGACGCGTAACCTGAACACCTACATCGAAGCTGAAGGCCTGGCGAAGAAGCACAAAGTCGCCACCACCGGTGATGATGCGCGTGAAGGCCTGACCGCAATTATTTCGGTCAAGGTTCCGGATCCGAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTTTCTTCCGAAGTGAAGACCGCTGTCGAACAGGAAATGGGTAAGTACTTCTCT
Pseudomonas_gessardii_CIP_105469_T_FN554186        GCCAAGCGGATTCGTGAGCTGTCCTTCCTCAACTCCGGTGTGGGTATCGTCCTCAAGGACGAGCGCAGCGGCAAGGAAGAGCTGTTCAAATACGAAGGTGGCCTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACTGCGGTCAAC---CAGGTGTTCCACTTCAATATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCCCAGCGCGACGGCGGTACTCACCTGGTGGGTTTCCGTTCCGCACTGACGCGTAACCTGAACACCTACATCGAAGCCGAAGGCCTGGCGAAGAAGCACAAAGTCGCCACCACCGGTGACGATGCCCGCGAAGGCCTGACTGCGATTATTTCGGTCAAGGTGCCAGACCCAAAGTTCAGCTCCCAGACCAAGGACAAGCTGGTTTCTTCTGAAGTGAAGACCGCTGTCGAACAGGAAATGGGCAAGTACTTCTCC
Pseudomonas_granadensis_F_278770_T_HG764749        GCCAAGCGGATTCGTGAACTGTCCTTCCTCAACTCCGGTGTCGGCATCGTCCTCAAGGATGAGCGCAGCGGCAAGGAAGAGCTTTTCAAATACGAAGGCGGCCTGCGCGCGTTCGTTGAATACCTGAACACCAACAAGACCGCGGTCAAT---CAGGTGTTCCACTTCAATATCCAGCGCGAAGACGGCATCGGCGTGGAAGTTGCGCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCGCAACGCGATGGCGGTACTCACCTGGTGGGCTTCCGTTCGGCGCTGACGCGTAACCTGAACAACTACATCGAACAGGAAGGCCTGGCGAAGAAACACAAAGTCGCCACCACTGGCGATGATGCCCGTGAGGGCCTGACTGCGATCATCTCGGTGAAAGTACCGGATCCGAAGTTCAGCTCGCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAGACCGCCGTCGAGCAGGAGATGGGCAAGTACTTCTCC
Pseudomonas_migulae_CCUG_43165_T_FN554204          GCCAAGCGGATTCGTGAACTGTCCTTCCTGAACTCCGGTGTCGGCATCGTCCTCAAGGATGAGCGCAGCGGCAAGGAAGAGTTGTTCAAGTACGAAGGTGGCTTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACTCCAGTCAAT---CAGGTGTTCCACTTCAACATTCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAATGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATCCCGCAGCGCGATGGGGGGACTCACCTGGTGGGTTTCCGCTCCGCTCTGACGCGTAACCTGAACACTTACATCGAAGCTGAAGGCCTGGCCAAGAAGCACAAGGTTGCCACCACCGGTGATGACGCCCGTGAAGGCTTGACCGCGATCATCTCGGTGAAGGTGCCGGATCCTAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAGACCGCGGTCGAACAGGAAATGGGCAAGTACTTCTCC
Pseudomonas_panacis_CIP_108524_T_FN554214          GCCAAGCGGATTCGTGAATTGTCCTTCCTCAACTCCGGTGTCGGCATCGTCCTCAAGGATGAGCGCAGCGGCAAGGAAGAGCTATTCAAATACGAAGGTGGCTTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACTGCGGTCAAC---CAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAATGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCACAGCGTGACGGTGGTACTCACCTGGTGGGTTTCCGTTCGGCGCTGACGCGTAACCTGAACACCTATATCGAAGCCGAAGGCCTGGCGAAGAAGCATAAGGTCGCCACCACCGGTGACGATGCCCGTGAAGGCCTGACCGCAATCATCTCGGTGAAAGTGCCGGACCCTAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAAACTGCGGTTGAACAGGAGATGGGTAAGTACTTCTCC
Pseudomonas_proteolytica_CIP_108464_T_FN554220     GCCAAGCGGATTCGTGAACTGTCGTTCCTCAACTCCGGTGTGGGTATCGTCCTCAAGGACGAACGCAGCGGCAAGGAAGAGCTGTTCAAGTACGAAGGTGGTCTGCGTGCATTCGTTGAATACCTGAACACCAACAAGACTGCGGTCAAC---CAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAATGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCCCAGCGCGACGGCGGTACTCACTTGGTGGGTTTCCGTTCTGCACTGACGCGCAACCTGAACACCTACATCGAAGCCGAAGGCCTGGCCAAGAAGCACAAGGTCGCCACCACCGGTGACGATGCCCGTGAAGGCCTGACTGCGATTATTTCGGTCAAGGTCCCGGATCCCAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTTTCTTCTGAAGTGAAGACCGCTGTTGAACAGGAAATGGGCAAGTATTTCTCC
Pseudomonas_putida_NBRC_14164_T_AP013070           GCCAAGCGTATTCGCGAGTTGTCGTTCCTCAACTCGGGCGTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAATACGAAGGCGGCCTGCGTGCGTTCGTCGAGTACCTGAACACCAACAAGACGCCAGTCAACTCCCAGGTGTTCCACTTCAGCGTTCAGCGTGAAGACGGCGTGGGCGTGGAAGTTGCTTTGCAGTGGAACGACAGCTTCAACGAAAACCTGCTGTGCTTCACCAACAACATTCCACAGCGCGACGGTGGCACCCACTTGGTGGGCTTCCGTTCTTCGCTGACCCGTAGCCTGAACAGCTACATCGAACAGGAAGGCCTGGCGAAGAAGAACAAGGTGGCGACCACGGGTGACGACGCCCGTGAAGGCCTGACCGCGATCATCTCGGTGAAGGTACCGGACCCCAAGTTCAGCTCGCAGACCAAAGACAAGCTGGTTTCCTCGGAGGTGAAAACCGCCGTGGAACAGGAGATGAACAAGTACTTCTCT
Pseudomonas_yamanorum_8H1_T_EU557346               GCCAAGCGGATTCGTGAATTGTCCTTCCTCAACTCCGGTGTGGGTATCGTCCTCAAGGACGAGCGCAGCGGCAAGGAAGAGCTGTTCAAATACGAAGGTGGCCTGCGTGCGTTCGTTGAATACTTGAACACCAACAAGACTGCGGTCAAC---CAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCTCAGCGCGATGGCGGTACTCACCTGGTGGGTTTCCGTTCGGCACTGACGCGTAACCTGAACACCTACATCGAAGCAGAAGGCCTGGCGAAGAAGCACAAAGTCGCCACCACCGGTGACGATGCCCGTGAAGGCCTGACCGCGATTATTTCGGTCAAGGTTCCGGATCCGAAGTTCAGCTCCCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAGACCGCCGTTGAACAGGAAATGGGCAAGTACTTCTCC
;
END;

[ The following blocks are output data for analysis step 25941 ]
BEGIN TREES;
      TITLE gyrB_Pseudomonas_spp._NJ_analysis;
      LINK TAXA = TaxaForAnalysisStep25941;
      TREE Fig._2G_Suppl. = [&R] ((((((((BT1L_MH750314:0.0,MPe3L_MH760410:0.0):0.02677526,Pseudomonas_brenneri_DSM_15294_T_JN589902:0.01900888):6.1345E-4,Pseudomonas_yamanorum_8H1_T_EU557346:0.01365899):0.00341543,(Pseudomonas_gessardii_CIP_105469_T_FN554186:0.01878683,Pseudomonas_proteolytica_CIP_108464_T_FN554220:0.02517357):0.00704544):0.00207955,Pseudomonas_azotoformans_IAM_1603_T_AB039411:0.03745913):0.01369242,Pseudomonas_migulae_CCUG_43165_T_FN554204:0.0428439):0.00164472,Pseudomonas_panacis_CIP_108524_T_FN554214:0.03340881):0.0142031,Pseudomonas_granadensis_F_278770_T_HG764749:0.0417595,Pseudomonas_putida_NBRC_14164_T_AP013070:0.12826077);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr118363]


END;