#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2024; 6:30 GMT TreeBASE (cc) 1994-2008 Study reference: Roy B., Vogler D., Bruns T., & Szaro T. 1998. Cryptic Species in the Puccinia monoica complex. Mycologia, 90(5): 846-853. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S294] [ The following blocks are input data for analysis step 263 ] BEGIN TAXA; TITLE TaxaForAnalysisStep263; DIMENSIONS NTAX=18; TAXLABELS Puccinia_consimilis_on_A._crand Puccinia_coronata Puccinia_graminis Puccinia_hordei Puccinia_mesnieriana Puccinia_monoica_on_A._demissa Puccinia_monoica_on_A._drummond Puccinia_monoica_on_A._hirsuta Puccinia_monoica_on_A._holboell Puccinia_monoica_on_A._perennan Puccinia_monoica_on_A._sparsifl Puccinia_monoica_on_S._linifoli Puccinia_thlaspeos_on_A._brewer Puccinia_thlaspeos_on_A._demiss Puccinia_thlaspeos_on_A._gunnis Puccinia_thlaspeos_on_A._holboe Puccinia_thlaspeos_on_P._fremon Uromyces_scillarum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2709] TITLE '40bp of ITS-1, 5.8S, ITS-2'; LINK TAXA = TaxaForAnalysisStep263; DIMENSIONS NCHAR=630; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Puccinia_consimilis_on_A._crand ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCGAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTC-CAAAATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-ACCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAAA---CTATAATGAT-CATTTTTT Puccinia_coronata NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAAATTA-AA-ATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAA-CCCTCTCACAAAACAACTTTATT--GTTGC---------TTTTTTTGTGGATGTTGAGTGTTGCTATAT-ATT-TATAGCTCACTTTAAATATATA--AGTCACACTTTT--CAAGTAA-GTTGGATTGACTTGGTGTAATAATT-TTATCATCACATCAAGGAAAGTAGCAATA--CTTGCCATCTT-TT-----------GAAAGG----AGGGACTCCTAAAAAAACCCCTCATAA-CCTTTTTTT Puccinia_graminis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAAGTTTAAATGAA-TGTAACC-AAACCTTTAATTTATAA-ATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-CCCTCTCATTAAA------CATTTT-ATTTTTGAT----TTGTTTAGTGGATGTTGAGTGTTGCTGT---ACC-TATAGCTCACTTTAAATATATA--AGTCA--CTTTT--CAAATAA-GTTGGATTGACTTGGTGTAATAATT-TTATCATCACATCAAGGAAAGTAGTAAAACACTTGCCATCTTGTTT-----------GTTAATAAGA--GACTCCTAAAA---CCCAATATCTT--A-TTTTT Puccinia_hordei NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAAGTTTAAATGAA-TGTAAAA-CAACCTTTAAATTATAT-ATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAA-CCCTCTCATTAAAC-----CATTTTGTTCTTGAACAAGATAGTTTAGTGGATGTTGAGTGTTGCTGTCAT------TAGCTCACTTTAAATATATC--AGTTA--CTTTT--CAAATGA-GTTGGATTGACTTGGTGTAATAATT-TTATCATCACATCAAGGAAAGTAGCAATA--CTTGCCATCTTGTTT-------------AAATAAAAGGGACTTCTAAAAA---CCCAATTAATT-ATTTTTT Puccinia_mesnieriana NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGAGTTTAAAGTGAGTGTAAAA-CCCCCTTTAAATTA-AA-ATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCTCTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAAACCCTCTCACAAAATATCTTTATT--GTTGC-------------TTTGTGGATGTTGAGTGTTGCTATAATATTATA--GCTCACTTTAAATATATA--AGTCACACACTCTTCAAGTAA-GTTGGATTGACTTGGTGTAATAATT-TAATCATCACATCAAGGAAAGTAGTCAAATACTTGCCATCTT-TT-----------GAAAGGGGAGAGGGACTTCTAAAA----CCCCATTAA---ATATTTT Puccinia_monoica_on_A._demissa ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCGAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTC-CAAAATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-ACCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAAA---CTATAATGAT-CATTTTTT Puccinia_monoica_on_A._drummond ATTAAAAGAACTAGAGTGCACTTAACTGTGACTCAAACCCTTTT-CAATATTACCCAA-TTTT-CAAGACTTGGTTGCATGATAT----AAATCATTGCAATTGAGTAAAAGTGACA-TTCTTTACTGAATGTTACATTACCCCCCCCTTTT------C-CTTTTTTTTTATAATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAAAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-CCCTCTCATAAAAA---TA-ATTT-GTTTTTA---------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTTAAATATT-ACAAGTTA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGTGATA--CTTGCCATCTTTATTTTA-TATAT--------------GACTCCTAAAAAAA---ATAAT----CAATTAAG Puccinia_monoica_on_A._hirsuta ATTAAAAGAACTAGAGTGCACTTGACTGTGGCTCAAACCCTTTT-CAATATTACCCAA-TTTT-CAAGACTTGGTTGCATGAT---AATAAATCATTGCAATTGAGTAAAAGTAACACTTCTT-ACTGAATGTTACATTACCCCCCCCTTT------ACTCTTTTT----ATCATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACCTTGCACCTCTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-CCCTCTCATAAAAA---TA-ATTT-GTNTTA----------TTTTTGTGGATATTGAGTGTTGCTGTGA-ACC--ACAGCTCGCTTTAAATATT--CAAGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCCATA--CTTGCCATCTTTCTTTTA-T------------------GACTCCTAAACA---CCATCATAAT-CATTTTTT Puccinia_monoica_on_A._holboell ATTAAAAGAACTAGAGTGCACTTGACTGTGGCTCAAACCCTTTT-CAATATTACCCAA-TTTT-CAAGACTTGGTTGCATGAT------AAATCATTGCAATTGAGTAAAAGTAACACTTCTTTACTGAATGTTACATTACCCCCCCCTTT------A-TCTTTTT----ATCATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACCTTGCACCTCTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-CCCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCGCTTTAAATATT--CAAGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCCATA--CTTGCCATCTTTCTTTTA-T------------------GACTCCTAAACA---CCATCATAATTCATTTTTT Puccinia_monoica_on_A._perennan ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCAAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTC-CAAAATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-ACCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAAA---CTATAATGAT-CATTTTTT Puccinia_monoica_on_A._sparsifl ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCGAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTT-CAAATTACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-CCCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAA---CCTATAATGAA-CATTTTTT Puccinia_monoica_on_S._linifoli ATTAAAAGAACTAGAGTGCACTTAACTGTGGCTCAAACCCTTTTTCAATATTACCCAA-TT---CAAGACTTGGTTGCATGATTTGAGAAAATCATTGCAATTGAGTAAAAGTAACA-TTCTTTACTGAATGTTACATTACCCCCCCTCTTT-----A-TCTTTTTT---ATAATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-{AC}CCTCTCATAAAAA---TA-ATTT-GTTTTA--------TTTTTTTATGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTTAAATATAT--AAGTCA---TTTTTTGAGATAAAGTTGGATTGACTTGGTGTAATAAATATTACCANNACATCAAGGAAAGTAGCCATA--CTTGCCATCTTTATTTTA-TGTAT--------------GACTCCTAAAAA---CCATCATGAT-CATTTTTT Puccinia_thlaspeos_on_A._brewer ATTAAAAGAACTAGAGTGTACTTAATTGTGGCTCGAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTT-CAAAATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACACACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-CCCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATC--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGCTTCTT-------------GACTCCTAAAA---CCTATAATGAA-CATTTTTT Puccinia_thlaspeos_on_A._demiss ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCGAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTC-CAAAATACACAAGTTTAAATGAA-TGTAAAAACCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-ACCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAAA---CTATAATGAT-CATTTTTT Puccinia_thlaspeos_on_A._gunnis ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCGAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTC-CAAAATACACAAGTTTAAATGAA-TGTAAAAACCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-ACCTCTCATAAAAA---TA-ATTT-GTGTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAACTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAAA---CTATAATGAT-CATTTTTT Puccinia_thlaspeos_on_A._holboe ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCGAACCCTTTTA-AACACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTC-CAAAATACACAAGTTTAAATGAA-TGTAAAAACCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-ACCTCTCATAAAAA---TA-ATTT-GTTTTA----------TTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTAGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAAA---CTATAATGAT-CATTTTTT Puccinia_thlaspeos_on_P._fremon ATTAAAAGAACTAGAGTGCACTTAATTGTGGCTCGAACCCTTTTA-AATACCACCCAAATTTTT-AAGACTTGGTTGCATGATTTGAGAGAATCATTGCAATTGAGTAAAAGTAAC--TTCTTTATTGAATGTTACATTACCCCCTCTTTTCTTTTTACTCTTTTTTTTCAAAATACACAAGTTTAAATGAA-TGTAAAA-CCCCCTTTAA-TTATAAAATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAA-CCCTCTCATAAAAA---TA-ATT--GTNTAT---------TTTTTTGTGGATGTTGAGTGTTGCTGTGA-ACC--ACAGCTCACTTGAAATATATA--AGTCA---TTTTT-GAGATAAAGTTGGATTGACTTGGTGTAATAAT-ATTACCANNACATCAAGGAAAGTAGCAATA--CTTGCCATCTTTATTTTAGTTTCTT-------------GACTCCTAAAAA---CTATAATGAT-CATTTTTT Uromyces_scillarum NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAAGTTTAAATGAA-TGTAAAA-CAACCTTTAAATTATAT-ATAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCATCTTGCGCCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAA-CCCTCTCATTAAAC-----CATTTTGTTCTTGAACAAGATAGTTTAGTGGATGTTGAGTGTTGCT-TC-T----GTTAGCTCGCTTTAAATATATC--AGTTA--CTTTTTTCAAATGA-GTTGGATTGACTTGG--TAATAATT-TTATCATCACATCAAGGAAAGTAGCAATA--CTTGCCATCT--CT-------------AAAAAAAAAGGGACTTCTAAAAAA--CCCAATTAATT-ATTATTA ; END; [ The following blocks are output data for analysis step 263 ] BEGIN TREES; TITLE Tb5043; LINK TAXA = TaxaForAnalysisStep263; TREE Fig._1 = [&R] ((((((Puccinia_thlaspeos_on_A._gunnis,Puccinia_monoica_on_A._perennan,Puccinia_monoica_on_A._demissa,Puccinia_thlaspeos_on_A._holboe,Puccinia_thlaspeos_on_A._demiss,Puccinia_consimilis_on_A._crand),(Puccinia_monoica_on_A._sparsifl,Puccinia_thlaspeos_on_A._brewer),Puccinia_thlaspeos_on_P._fremon),(((Puccinia_monoica_on_A._holboell,Puccinia_monoica_on_A._hirsuta),Puccinia_monoica_on_A._drummond),Puccinia_monoica_on_S._linifoli)),((Puccinia_hordei,Uromyces_scillarum),Puccinia_graminis)),Puccinia_mesnieriana),Puccinia_coronata); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1410] END;