#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 13, 2024; 7:52 GMT TreeBASE (cc) 1994-2008 Study reference: Morton J. 1990. Evolutionary relationships among arbuscular mycorrhizal fungi in the Endogonaceae. Mycologia, 82: 192-207. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S295] [ The following blocks are input data for analysis step 265 ] BEGIN TAXA; TITLE TaxaForAnalysisStep265; DIMENSIONS NTAX=56; TAXLABELS Acaulospora_appendicula Acaulospora_delicata Acaulospora_denticulata Acaulospora_dilatata Acaulospora_lacunosa Acaulospora_laevis Acaulospora_longula Acaulospora_mellea Acaulospora_morrowae Acaulospora_myriocarpa Acaulospora_rehmii Acaulospora_rugosa Acaulospora_spinosa Entrophospora_colombiana Entrophospora_infrequens Entrophospora_schenckii Gigaspora_albida Gigaspora_decipiens Gigaspora_gigantea Gigaspora_margarita Glomus_aggregatum Glomus_ambisporum Glomus_arborense Glomus_cerebriforme Glomus_claroideum Glomus_clarum Glomus_deserticola Glomus_diaphanum Glomus_dimorphicum Glomus_etunicatum Glomus_fasciculatum Glomus_fecundisporum Glomus_glomerulatum Glomus_heterosporum Glomus_intraradices Glomus_leptotichum Glomus_macrocarpum Glomus_maculosum Glomus_manihotus Glomus_mosseae Glomus_occultum Glomus_pallidum Glomus_tenerum Glomus_tortuosum Glomus_versiforme Glomus_warcupii Sclerocystis_coremioides Sclerocystis_rubiformis Scutellospora_calospora Scutellospora_corralloidea Scutellospora_dipapillosa Scutellospora_dipurpurescens Scutellospora_gregaria Scutellospora_heterogama Scutellospora_pellucida Scutellospora_weresubiae ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1531] TITLE Table_II; LINK TAXA = TaxaForAnalysisStep265; DIMENSIONS NCHAR=27; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -; CHARSTATELABELS 1 Plant_mutualist / Absent Present, 2 Arbuscular_development / None Dichotomously_branched_intrarad, 3 Fungal_thallus / Arbuscules_alone Arbuscules_and_intraradical_ves Arbuscules_and_extraradical_aux, 4 Auxiliary_cells / Papillate_to_spiny Smooth_to_knobby, 5 Stain_response_in_trypan_blue / Dark_blue Faint_to_no_reaction, 6 Arrangement_of_spores / Singly_rarely_on_branched_hypha On_branched_hyphae_in_loose_agg In_dense_aggregates In_sporocarps, 7 Spore_arrangement_in_sporocarps / Randomly_in_glebal_hyphae Organized_around_a_central_hyph Organized_around_plexus_on_a_st, 8 Peridium_surrounding_spore / Absent Present, 9 Mode_of_spore_development / Terminal_on_an_undifferentiated Lateral_on_neck_of_a_sporiferou Terminal_on_sporogenous_cell_o, 10 Spore_develop_from_saccule_neck / Terminally_on_a_hyphal_branch Terminally_on_a_short_pedicel Lateral_outgrowth_from_saccule Inside_saccule_neck, 11 Precursors_to_spore_development / None 'Thin-walled intraradical vesicl', 12 #_separable_wall_groups / One Two_or_more, 13 'Surface, structural walls' / Smooth Discrete_ornamentations, 14 Wall_enclosing_structural_walls / None One_evanescent_wall Two_evanescent_walls Unit_wall Thin_flexible_wall, 15 Evanescent_outer_spore_wall / Granular_with_no_reaction Mucilaginous_with_dextrinoid_re, 16 Outer_evanescent_wall / Absent Present, 17 Outer_unit_spore_wall / Absent Present, 18 'Surface, outer unit wall' / Smooth Discrete_ornamentations, 19 '# inner semi-rigid wall' / No One Two, 20 #_inner_membranous_walls / None One Two Three, 21 'Surface, membranous inner wall' / Smooth '"Beaded"', 22 'Inner membrane wall rxn--Melzer' / None Dextrinoid_to_light_purple, 23 #_thick_flexible_inner_walls / None One, 24 #_coriaceous_inner_walls / None One Two, 25 Amorph._walls_on_membrane_wall / None One, 26 Amorph._wall_on_coriaceous_wall / None One, 27 Germination_of_spores / Germ_tubes_from_papillate_wall Germ_tubes_from_germination_sh, ; MATRIX [ 10 20 30] [ . . .] Acaulospora_appendicula 111000001000130000000010000 Acaulospora_delicata 111000001201000100121200000 Acaulospora_denticulata 111000001201100100121100000 Acaulospora_dilatata 111000001201000100211000100 Acaulospora_lacunosa 111000001201100100211000100 Acaulospora_laevis 111000001201000100121000000 Acaulospora_longula 111000001201000100121100000 Acaulospora_mellea 111000001201000100121000000 Acaulospora_morrowae 111000001201040100111000100 Acaulospora_myriocarpa 111011001100030000010000000 Acaulospora_rehmii 111000001201100100121100000 Acaulospora_rugosa 111000001201040100111000100 Acaulospora_spinosa 111000001201100100121100000 Entrophospora_colombiana 111000001301000100211000100 Entrophospora_infrequens 111000001300100100200010000 Entrophospora_schenckii 111010001301000100010000000 Gigaspora_albida 112000002000000010000000000 Gigaspora_decipiens 112000002000000010000000000 Gigaspora_gigantea 112000002000000010000000000 Gigaspora_margarita 112100002001000010000000000 Glomus_aggregatum 111002000010000000000000000 Glomus_ambisporum 1110031000000{12}0000010000000 Glomus_arborense 111002000000000000000000000 Glomus_cerebriforme 111003000000000000010000000 Glomus_claroideum 1110000000000{12}0000010000000 Glomus_clarum 111001000010011000000000000 Glomus_deserticola 111001000000000000000000000 Glomus_diaphanum 111001000010010000010000000 Glomus_dimorphicum 111001000000020000010000000 Glomus_etunicatum 111000000000010000000000000 Glomus_fasciculatum 111002000000030000010000000 Glomus_fecundisporum 111011000000030000000000000 Glomus_glomerulatum 111003000000000000010000000 Glomus_heterosporum 111003100000010000010000000 Glomus_intraradices 111001000010021000000000000 Glomus_leptotichum 111011000000030000000000000 Glomus_macrocarpum 111003010000030000000000000 Glomus_maculosum 111000000000030000010000000 Glomus_manihotus 111001000010011000000000000 Glomus_mosseae 111002010000011000000000000 Glomus_occultum 111010000000000000000000000 Glomus_pallidum 111003000000000000000000000 Glomus_tenerum 111003010000000000000000000 Glomus_tortuosum 111010010000000000000000000 Glomus_versiforme 111002000000030000000000000 Glomus_warcupii 111002010000011000000000000 Sclerocystis_coremioides 111002210000000000000000000 Sclerocystis_rubiformis 111002100000000000000000000 Scutellospora_calospora 112100002001000010020100001 Scutellospora_corralloidea 112100002001000011010000001 Scutellospora_dipapillosa 112100002001000011010001001 Scutellospora_dipurpurescens 112100002001000010010001011 Scutellospora_gregaria 112100002001000011020000001 Scutellospora_heterogama 112100002001000010020000001 Scutellospora_pellucida 112100002001000010010002011 Scutellospora_weresubiae 112100002001000010030101001 ; END; [ The following blocks are output data for analysis step 265 ] BEGIN TREES; TITLE Tb5045; LINK TAXA = TaxaForAnalysisStep265; TREE Fig._3 = [&R] (((((Scutellospora_pellucida,Scutellospora_dipurpurescens),Scutellospora_dipapillosa),Scutellospora_corralloidea,(Scutellospora_heterogama,Scutellospora_gregaria,(Scutellospora_calospora,Scutellospora_weresubiae))),Gigaspora_margarita,Gigaspora_gigantea,Gigaspora_decipiens,Gigaspora_albida),(((((((Acaulospora_rehmii,Acaulospora_denticulata),Acaulospora_delicata,Acaulospora_longula,Acaulospora_mellea),Acaulospora_laevis),Acaulospora_rugosa,(Acaulospora_spinosa,(Acaulospora_dilatata,Acaulospora_lacunosa,Acaulospora_morrowae))),Acaulospora_myriocarpa,(Entrophospora_infrequens,(Entrophospora_schenckii,Entrophospora_colombiana))),Acaulospora_appendicula),((Glomus_occultum,Glomus_maculosum),(Glomus_claroideum,Glomus_etunicatum)),Glomus_tortuosum,(Glomus_deserticola,((((Glomus_manihotus,Glomus_clarum,(Glomus_intraradices,Glomus_diaphanum)),Glomus_aggregatum),Glomus_dimorphicum),(Glomus_leptotichum,Glomus_fecundisporum),(Glomus_arborense,((Glomus_warcupii,Glomus_mosseae),(Glomus_versiforme,Glomus_fasciculatum),(Glomus_pallidum,((Glomus_tenerum,Glomus_macrocarpum),(Glomus_glomerulatum,Glomus_cerebriforme),(Sclerocystis_rubiformis,(Sclerocystis_coremioides,(Glomus_heterosporum,Glomus_ambisporum))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1413] END; BEGIN TREES; TITLE Tb5045; LINK TAXA = TaxaForAnalysisStep265; TREE Fig._2 = [&R] (((Gigaspora_albida,Gigaspora_decipiens,Gigaspora_gigantea,Gigaspora_margarita)Gigaspora,(((Scutellospora_heterogama,Scutellospora_gregaria),(Scutellospora_calospora,Scutellospora_weresubiae)),(Scutellospora_corralloidea,(Scutellospora_dipapillosa,(Scutellospora_dipurpurescens,Scutellospora_pellucida))))Scutellospora),(((((((((Acaulospora_longula,Acaulospora_delicata,Acaulospora_mellea),(Acaulospora_rehmii,Acaulospora_denticulata)),Acaulospora_laevis),Acaulospora_rugosa),(Acaulospora_spinosa,(Acaulospora_lacunosa,(Acaulospora_morrowae,Acaulospora_dilatata)))),Acaulospora_myriocarpa),Acaulospora_appendicula)Acaulospora,(Entrophospora_infrequens,(Entrophospora_schenckii,Entrophospora_colombiana))Entrophospora),((((((Glomus_heterosporum,Glomus_ambisporum),(Sclerocystis_rubiformis,Sclerocystis_coremioides)Sclerocystis),((Glomus_cerebriforme,Glomus_glomerulatum),(Glomus_pallidum,(Glomus_tenerum,Glomus_macrocarpum)))),((Glomus_warcupii,Glomus_mosseae),(Glomus_arborense,(Glomus_versiforme,Glomus_fasciculatum)))),(((Glomus_leptotichum,Glomus_fecundisporum),Glomus_deserticola),(Glomus_dimorphicum,(Glomus_aggregatum,(Glomus_intraradices,(Glomus_diaphanum,(Glomus_manihotus,Glomus_clarum))))))),(Glomus_tortuosum,((Glomus_etunicatum,Glomus_claroideum),(Glomus_occultum,Glomus_maculosum))))))Endogonaceae; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1412] END;