#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on December 25, 2025; 7:07 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ercole E., Voyron S., Ghignone S., Perotto S., & Girlanda M. 2016. Fine-scale spatial
distribution of orchid mycorrhizal fungi in the soil of host-rich grasslands.
New Phytologist, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19171]

[ The following blocks are input data for analysis step 26743 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep26743;
        DIMENSIONS NTAX=15;
        TAXLABELS
            Mortierella_longicollis_HQ630287
            Umbelopis_ramanniana_var_angulispora_HQ630286
            Umbelopsis_autotrophica_HQ630285
            Umbelopsis_isabellina_HQ630363
            Umbelopsis_isabellina_HQ630365
            Umbelopsis_nana_JN206391
            Umbelopsis_ovata_JN206395
            Umbelopsis_sp._OTU_1762
            Umbelopsis_sp._OTU_1763
            Umbelopsis_sp._OTU_2917
            Umbelopsis_sp._OTU_4735
            Umbelopsis_vinacea_HQ630366
            uncultured_Helotiaceae_FJ454913_OM
            uncultured_Helotiaceae_FJ454916_OM
            uncultured_Mortierella_HQ021935
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M57110]

	TITLE Umbelopsis;
	LINK TAXA = TaxaForAnalysisStep26743;
	DIMENSIONS NCHAR=387;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       ]
[                                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]
Mortierella_longicollis_HQ630287                  CGAAATGCGATACGTAATGTGAATTGCAGAA---AGTGAATCATCTAATCTTTGAACGCATCTTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTTCAGTATCATGAAAACCCTCACCTCTAAACAAGGTGG-TTTATGAAAGTGCTTTGTGACCTGAGCTCTTTT----TAAACATATTCCATGAGATGGAATTGTGA------CCTATACCTACTAATGGTTTAACGACCTACC-----TTGGTATTGTGTCCCAAACTCCAATACTCTCA----------TGTCACGGCGGCGGCTTTGGCTTTGGCCAAAACCCCCACCA---------CCCATTCATAAAT-TTGATCTGAAATCAGGTAGGACTACCCGCTGA------
Umbelopis_ramanniana_var_angulispora_HQ630286     CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACAACTAACCTTTG----GGTGAAATTGTGGAAT-TGGAATGCGCTGATTTTAA-TAAGCAGCCCTTCTAAAATATATTTCATG-----ACTGTCACCTAACACAGCAGT-TTGGCCTAAT-AGTTTTGACATTGATTTGTCAAATCTTTGGCTTACATTTGC-----TTCAGG-TTGTCAGTCTTGATAATACAGAAAA------------------CTC--ATTCAAAT-TTGATC--------------------------------
Umbelopsis_autotrophica_HQ630285                  CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCTCTGGTATTCCGGAGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACACCTAACCTTTG--G-GGATAAAGTGTGGAAT-TGGGATGCGCCAGTTTGCAAAGATTGGCCCTCTTAAAATTCAGTTCTTG-----GCTGTTTTCAATATGAGCAGT-TTGGCCTAAT-AGTTTTGGCTCT--TTTGTCAAATCTTTGGCT-TCATTCGC-----TTCTGA-AAATCAGTCTTGATA-TACAGAAAA------------------CTC--ATTCAAACTTTGATCTGAAATCAGGTAGGGCTACCCGCTGA------
Umbelopsis_isabellina_HQ630363                    CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCTATGGTATTCCGTAGAGTATGCCTGTTTCAGTATCATGAACACCTCACTACTATAACTTTATTG--TTGTAATAGTGGACT-TGGAATGCGCTGGTGT----CAATCAGCCCTTCTAAAATGGAGTTCTTGCACTGTTGATTTGTTTTAACAGCGATGTTGGCCTAATAAGTTTCGGCAGTAAT-GTTGAAATC-CTGGCT-TTTTTTGC-----TTAGAATCTGACAGTCTTGATA-TACAGAATTTTGAGGTGACTTGT----CTCCTCTTCAAATTTTGATCTGAAATCAGGTAGGATTACCCGCTGAACTTAA
Umbelopsis_isabellina_HQ630365                    CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACTCCTAACCTTTG--T-GGTTATGATGTGGAAT-TGGGATGCGCCGATTTTTACTAGTCGGCACTCCTAAAATGTAGCTCTTG-----GCTGTTTCCTACTACAGCAGT-TTGGCCTAAT-AGTTTTGACTTT----TGTCAAATCTTTGGCTACA-TTTGC-----TTCTGG-AAGTCAGTCTTGATAATACAGAAAA------------------CTCA-TTTCAAACTTTGATCTGAAATCAGGTAGGGCTACCCGCTGAACTTAA
Umbelopsis_nana_JN206391                          CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACACCTAACCTTTG--G-GTTTATGGCGTGGAAT-TGGAATGCGCCGACTGTCA-TGGTTGGCCCTTCTAAAATGTAGTTCTTG-----GCTGTCACCTAATACAGCAGT-TTGGCCTAAT-AGTTTTGGCATTCAT-TGTCAAATCTTTGGCTAACATTTGC-----TCCAG--GAGTCAGTCTTGATAATACAGAAAA------------------CTC--ATTCAAATTTTGATCTGAAATCAGGTAGGGCTACCCGCTGAACTTAA
Umbelopsis_ovata_JN206395                         CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACAACTAACCTTTG--G-GTTATTATTGTGGAAT-TGGGATGCGCCGATTTTCAATGGTCGGCACTCCTAAAATGTAGTTCTTG-----GCTGTTTCCTACTACAGCAGT-TTGGCCTAAT-AGTTTTGACTTT----TGTCAAATCTTTGGCTACATTTTGC-----TTCTGG-AAATCAGTCTTGATGATACAGAAAA------------------CTCA-TTTCAAACTTTGATCTGAAATCAGGTAGGG-----------------
Umbelopsis_sp._OTU_1762                           CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACAACTAATCTTTGTTG-GTTAAGATTGTGGAAT-TGGGATGCGCCAGTTGTTATTGATTGGCCCTCCTAAAATGTAGCTCTTG-----ACTGTGGACTGCTACAGTAGT-TTGGCCTAAT-AGTTTTGGCAGTTATATGTCAAATCTTTGGCT-ACATTTAC-----TTTGGTCCATGCAGTCTTGATA-TACAGAAAA------------------CTCT-AATACAACTTTGATCTGAAATCAGGTAGGGCTACCCGCTGAACTTAA
Umbelopsis_sp._OTU_1763                           CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACACCTAACCTTTG--G-GTTTATGGCGTGGAAT-TGGAATGCGCCGACTGTCA-TGGTTGGCCCTTCTAAAATGTAGTTCTTG-----GCTGTCACCTAATACAGCAGT-TTGGCCTAAT-AGTTTTGGCATTCAT-TGTCAAATCTTTGGCTAACATTTGC-----TCCAG--GAGTCAGTCTTGATAATACAGAAAA------------------CTC--ATTCAAATTTTGATCTGAAATCAGGTAGGGCTACCCGCTGAACTTAA
Umbelopsis_sp._OTU_2917                           CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAACACCTCAAACTGAACTGTT----------------------TGATGTTGGGCAACGC----CTGGAGGCGTGCCTAAAAT----------------------------------------------------TTAGCGATGGTACATTAAACCTCAAGCGCACAGATGTCGTTATGTGGGCAAGATGGCACCAGTCTCTTCG----------------------TGAATTTCTGAATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA
Umbelopsis_sp._OTU_4735                           CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTGTCATTGAATTCTCAGAACCCCTTCCTGATCT--TTCAGCAAGTGGGTT-TGGATTGGTGGAGGAT----GCACTGCTGCCTCTATGGGGGCATTTTTGCT---CCTCTGAAATGGAACAGTGTTATGGCACAAAC-----TGGTCATCGGTATATGATACTCCTTAC---CGGCTGCCAACCTGTGCGTGGCACAATCCCATTGTTGTAT----------------------TTTGTGGACAAAT-TTGACCTCAAATCAGGCAGGACTACCCGCTGAACTTAA
Umbelopsis_vinacea_HQ630366                       CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCTATGGTATTCCGTAGAGTATGCCTGTTTCAGTATCATGAACACCTCACTACTACAACTTTATTGTTTTGTAAGAGTGGACT-TGGGATGCGCTGGTGT----CAATCAGCCCTTCTAAAATGGAGTTCTTGCACTGTTGATTTGTTTTAACAGCAATGTTGGCCTAATAAGTTTCGGCAGTAAT-GTTGAAATCACCGGCT-TTTTTTGC-----TTAGAATCTGACAGTCTTGATA-TACAGAATTTTGAGGTGGACTTTGGTCCCCTCTTTCAAATTTTGATCTGAAATCAGGTAGGATTACCCGCTGAACTTAA
uncultured_Helotiaceae_FJ454913_OM                CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACACCTAACCTTTG--G-GTTTATGGCGTGGAAT-TGGAATGCGCCGACTGTCA-TGGTTGGCCCTTCTAAAATGTAGTTCTTG-----GCTGTCACCTAATACAGCATT-TTGGCCTAAT-AGTTTTGGCATTCAT-TGTCAAATCTTTGGCTAACATTTGC-----TCCAG--GAGTCAGTCTTGATAATACATAAAA------------------CTC--ATTCAAATTTTGATCTGAAATCAGGTAGGGCTACCCGCTGAACTTAA
uncultured_Helotiaceae_FJ454916_OM                CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACACCTAACCTTTG--G-GTTTATGGCGTGGAAT-TGGAATGCGCCGACTGTCA-TGGTTGGCCCTTCTAAAATGTAGTTCTTG-----GCTGTCACCTAATACAGCAGT-TTGGCCTAAT-AGTTTTGGCATTCAT-TGTCAAATCTTTGGCTAACATTTGC-----TCCAG--GAGTCAGTCTTGATAATACAGAAAA------------------CTC--ATTCAAATTTTGATCTGAAATCAGGTAGGGCTACCCGCTGAACTTAA
uncultured_Mortierella_HQ021935                   CGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACAACTAATCTTTGTTG-GTTAAGATTGTGGAAT-TGGGATGCGCCAATTGTTATTGATTGGCCCTCCTAAAATGTAGCTCTTG-----ACTGTGGACTACTACAGTAGT-TTGGCCTAAT-AGTTTTGGCAGTTACATGTCAAATCTTTGGCT-ACATTTAC-----TTTGGTCCATGCAGTCTTGATA-TACAGAAAA------------------CTCTAAATACAACTTTGATCTGAAATCAGGTAGGGCTACCCGCTGAACTTAA
;
END;

[ The following blocks are output data for analysis step 26743 ]
BEGIN TREES;
      TITLE Umbelopsis;
      LINK TAXA = TaxaForAnalysisStep26743;
      TREE Imported_tree_1 = [&R] (Mortierella_longicollis_HQ630287:0.5778476854212148,((Umbelopsis_sp._OTU_2917:0.7701509474024444,Umbelopsis_sp._OTU_4735:0.8835757120005165)82:0.5886879001921456,((Umbelopsis_isabellina_HQ630363:7.78579152133E-7,Umbelopsis_vinacea_HQ630366:0.04175697004035963):0.2945717394993664,(Umbelopis_ramanniana_var_angulispora_HQ630286:0.04208259143421322,((uncultured_Helotiaceae_FJ454913_OM:0.006693085527723762,(Umbelopsis_sp._OTU_1763:7.78579152133E-7,(Umbelopsis_nana_JN206391:7.78579152133E-7,uncultured_Helotiaceae_FJ454916_OM:7.78579152133E-7)29:7.78579152133E-7)66:7.78579152133E-7)93:0.02957278578862127,((Umbelopsis_sp._OTU_1762:0.006726752023666627,uncultured_Mortierella_HQ021935:0.003028149498362935)97:0.1121809000285265,(Umbelopsis_autotrophica_HQ630285:0.10981713398053898,(Umbelopsis_isabellina_HQ630365:0.03181875659845021,Umbelopsis_ovata_JN206395:0.02044753153966824)82:0.025828827230091268)52:0.015775430878360412)37:0.024539749285516985)28:0.0407984543551369)51:0.09676084329687785)89:0.291658182152693)63:0.5778476854212148);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr127525]


END;