#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 2:20 GMT TreeBASE (cc) 1994-2008 Study reference: Spies C.F., Mostert L., Carlucci A., Moyo P., Van jaarsveld W.J., Du plessis I.L., Van dyk M., & Halleen F. 2020. Novel taxa in the Phaeomoniellales and other fungi associated with wounds, cankers and other symptomatic wood of European and wild olives in South Africa. Persoonia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S26669] [ The following blocks are input data for analysis step 26984 ] BEGIN TAXA; TITLE TaxaForAnalysisStep26984; DIMENSIONS NTAX=30; TAXLABELS 'Calosphaeria africana CSN33_ITS5' 'Calosphaeria africana NR_135945_STE_U_6182' 'Calosphaeria pulchella NR_145357_CBS_115999' 'Jattaea algeriensis NR_135946_STE_U_6201' 'Jattaea aphanospora NR_136007_J.F._06100' 'Jattaea aurea KT716462_CBS_140209' 'Jattaea discreta NR_145369_CBS_127681' 'Jattaea leucospermi NR_135948_CBS_119343' 'Jattaea mookgoponga EU367449_STE_U_6184' 'Jattaea mookgoponga NR_136008_CBS_120867' 'Jattaea ribicola NR_136135_CBS_139779' Jattaea_sp._CSN1152_ITS4_CS30 'Jattaea taediosa NR_136136_MR_3669' 'Jattaea tumidula NR_136137_CBS_140208' 'Pleurostoma ochraceum NR_136033_CBS_131321' 'Pleurostoma ootheca NR_136009_CBS_115329' 'Pleurostoma repens NR_135925_CBS_294.39' 'Pleurostoma richardsiae CSN1101_ITS4_CS022' 'Pleurostoma richardsiae CSN1161_ITS5' 'Pleurostoma richardsiae CSN144_ITS5' 'Pleurostoma richardsiae CSN145_ITS4_CS30' 'Pleurostoma richardsiae CSN1925_ITS5_CS31' 'Pleurostoma richardsiae CSN493_ITS5' 'Pleurostoma richardsiae CSN496_ITS4_CS30' 'Pleurostoma richardsiae CSN500_ITS5' 'Pleurostoma richardsiae CSN501_ITS4_CS012' 'Pleurostoma richardsiae CSN514_ITS5_CS31' 'Pleurostoma richardsiae CSN947_ITS4_CS30' 'Pleurostoma richardsiae NR_135933_CBS_270.33' 'Togniniella acerosa NR_135947_CBS_113726' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58019] TITLE 'Calosphaeriales - ITS alignment'; LINK TAXA = TaxaForAnalysisStep26984; DIMENSIONS NCHAR=624; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Calosphaeria africana CSN33_ITS5' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCCC--AAGGCCCAGCGCCTGGTGTTGGGGCACCGCGG----------AGACGCGGGCCCCCAAGTCCAGTGGCGAGCCCGCCGGCGAACCGAGCGAAGTAACAT--ACCCTCCGCCACGGTGAC-CCGACGGGACCCAGCCGTAAAA-TCGGGCG--GTCGCGCGGTCACAAACCGCGCCGAC{AC}GACGAAACTAAGTGG--------------------------------------- 'Calosphaeria africana NR_135945_STE_U_6182' AGGGATCATTAGCGAGTTGAAAAACTCCCAAACCC-ATGCGTACCTTACCA-TGTCGTTGCTTCGGCGGGCGGCCCTGACCCTTCCCCCCT---CCGGGGGGGAGCGGGAGAGGGCACGC-GGCCCCCCCTTTGGGGGG--------CGCCCGCCGGAGGCCCGAA-CAGACCCTGTCATCTCAGCGAGAAGTCCTCTGAGCCAACTGAAAAAAAATCAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCCC--AAGGCCCAGCGCCTGGTGTTGGGGCACCGCGG----------AGACGCGGGCCCCCAAGTCCAGTGGCGAGCCCGCCGGCGAACCGAGCGAAGTAACAT--ACCCTCCGCCACGGTGAC-CCGACGGGACCCAGCCGTAAAA-TCGGGCG--GTCGCGCGGTCACAAACCGCGCCGACCGACGAAACTAAGTGGTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Calosphaeria pulchella NR_145357_CBS_115999' AGGGATCATTAGCGAGTTGAAAAACTCCCAAACCC-ATGCGTACCTTACCA-TGTCGTTGCTTCGGCGGGCGGCTCTTGACCCTCCCCCCCGAGTCCGGTGGGGAGGGGAGAGGGCACGCGGGCCCCCCGTCGGGGGGG--------CGCCCGCCGGAGGCCCGAA-CAGACACTGTCATCTCAGCGAGAAGTCCTCTGAGCCAACTG---AAAAATCAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCCCCAAGGCCC-AGCGCCTGGTGTTGGGGCACCGCGG----------AGACGCGGGCCCCCAAGTCCAGTGGCGAGCCCGCCGGCGAACCGAGCGAAGTAACAT--ACCCTCCGCCACGGTGAC-CCGACGGGACCCAGCCGTGAAAACCGGTCG--GGAGCGCGGCCACGAAACCGCGCGACCGCCGAAACTAAGTGGTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Jattaea algeriensis NR_135946_STE_U_6201' AGGGATCATTACAGAGTTGCAAAACTCCCAAACCC-ATGCGTA-CATACCG-TGTCGTTGCTTCGGCGGGCTGTCGCCTCCCCC-----------------------GGGGGGTGCGGCCCCG-----GCCCGCGAGGG--------AGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGTATCTTG-AAAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GG-AAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGAAACCCGAGCGCAGTAGA----AATCTCCGCCCCGGGAGC-CCGGACGGCCTCCGCCGTTAAA-CGAGACG--CGTGAAAAACGTCCT-------------------CCACAAGTTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Jattaea aphanospora NR_136007_J.F._06100' -----------CAGAGTTGCAAAACTCCCAAACCCATTGCGTA-CATACCA-TGTCGTTGCTTCGGCGGGCTGCCGCCCTCCCTC----------------------CGGGGAGGCGGACCCG-----GCCCCTCGGGG--------AGCCCGCCGGAGGTACAAA------CTCTTATCTTCCTAG--AAGCCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCACTC--AGGCCC---AGCCTGGCGTTGGGGCACTGCGT-------GC-GAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGGGC-CCGGGCGGACTCCGCCATCAAC-AGAGGGA--CTCGCGTCCCTCCTT-------------------CTCAAGG---------------------------------------- 'Jattaea aurea KT716462_CBS_140209' ------CATTACAGAGTTGCAAAACTCCCAAACCC-ATGCGTA-CATACCG-TGTCGTTGCTTCGGCGGGCTGTCGCCTCCCCCC----------------------GGGGGGTGCGGCCCCG-----GCCCGCGAGGG--------AGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GG-AAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGAAACCCGAGCGTAGTAA-----AATCTCCGCCCCGGGAGC-CCGGACGGCCTCCGCCGTTAAG-CGAGACG--CGTAAAAAACGTCCT-------------------CCACAAGT--------------------------------------- 'Jattaea discreta NR_145369_CBS_127681' -----------CAGAGTTGCAAAACTCCCAAACCCATTGCGTA-CATACCA-TGTCGTTGCTTCGGCGGGCTGCCGCCCTCCCTC----------------------CGGGGAGGCGGACCCG-----GCCCCTCGGGG--------AGCCCGCCGGAGGTACAAA------CTCTTATCTTTCTAGAAAAGTCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCACTC--AGGCCC---AGCCTGGCGTTGGGGCACTGCGT-------GC-GAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGGGC-CCGGGCGGACTCCGCCATCAAC-CGAGGGA--CGCGAGTCCCTCCTT-------------------CTCAAGG---------------------------------------- 'Jattaea leucospermi NR_135948_CBS_119343' AGGGATCATTATCGAGTTGCAAAACTCCCAAACCC-TTGCGTA-CATACCA-CGTCGTTGCTTCGGCGGGCTGCCGCCCTCCCCCCC----------------AGCGGGGGCGGGCGGACCTG-----GCCCGGGAGGG--------AGCCCGCCGGAGGCCCAAAACAAACTCTTGTATCCCATCCAGTCGTCTTCTGAGTGACTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCCCAAGTTCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAGC----ACTCTCCGCCACGGGAAC-CCGGACGGCCTCCGCCGTGAAA-CGGGACG--CGCGAGCGTCCCCCA-------------------CCAAAAGGTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Jattaea mookgoponga EU367449_STE_U_6184' AGGGATCATTAACGAGTTGCAAAACTCCCAAACCC-TTGCGTA-CATACCATTGTCGTTGCTTCGGCGGGCTGCCCTCCCCCTCG----------------------CGGGGGAGCGGACCTG-----GCCCGAGAGGGA-------AGCCCGCCGGAGGCCCAAAACAAACTCTTGTATCAAAACCAGTCGTCTTCTGAGTGACTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCCCAAGTGCAGTGGCGAGCCGGCCGGTAACCCGAGCGTAGTAAT----ACTCTCCGCCCCGGGACG-CCGGACGGCCTCCGCCGTTAAA-CGGGACGCCCACCAGCGTCCTCCA-------------------CTAAAGGT-TGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Jattaea mookgoponga NR_136008_CBS_120867' -----------ACGAGTTGCAAAACTCCCAAACCC-TTGCGTA-CATACCATTGTCGTTGCTTCGGCGGGCTGCCCTCCCCCTCG----------------------CGGGGGAGCGGACCTG-----GCCCGAGAGGGA-------AGCCCGCCGGAGGCCCAAAACAAACTCTTGTATCAAAACCAGTCGTCTTCTGAGTGACTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCCCAAGTGCAGTGGCGAGCCGGCCGGTAACCCGAGCGTAGTAAT----ACTCTCCGCCCCGGGACG-CCGGACGGCCTCCGCCGTTAAA-CGGGACGCCCACCAGCGTCCTCCA-------------------CTAAAGG---------------------------------------- 'Jattaea ribicola NR_136135_CBS_139779' ------CATTAATGAGTTGCAAAACTCCCAAACCA-CTGCGTA-CGTACCA-TGTCGTTGCTTCGGCGGGCCGCCGCCCTCCCCC--------------------CGGGGGGGCGCGGTCCTG-----GCCCGAGAGGG--------GGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGCATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCTCAAGTACAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAC----ACTCTTCGCCCTGGGGCC-CCGGGCGACCTCCGCCGTTAAA-CGAGACG--CGAGAGCGCCTTCCA-------------------CAAGG------------------------------------------ Jattaea_sp._CSN1152_ITS4_CS30 -------------GAGTTGAAAAACTCCCAAACCCACTGCGTA-CGTACCA-TGTCGTTGCTTCGGCGGGCTGCCGCCCCCCCGA--------------------GAGGTGGGCGCGGCCCCG-----GCCCGAGAGGG--------AGCCCGCCGGAGGCCTAAA------CTCTGTATCTCGGCGAGATGTCTTCTGAGTATCTTG-AAAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCTCAAGCCCAGTGGCGAGCCGGCCGGTAACCCGAGCGTAGTAGC----ACTCTTCGCCCTGGGAGC-CCGGACGGCCTCCGCCGTGAAA-CAGTGGGCGCGAGAGCGCCCCCCT-------------------CCACAAGG--------------------------------------- 'Jattaea taediosa NR_136136_MR_3669' ------CATTACAGAGTTGCAAAACTCCCAAACCCATTGCGTA-CATACCA-TGTCGTTGCTTCGGCGGGCTGCCGTCCTCCCCC----------------------AGGGGAGGCGGACCCG-----GCCCCTCGGGG--------AGCCCGCCGGAGGTATAAA------CTCTTATCTTTATAGAAAAGCCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCACTC--AGGCCC---AGCCTGGCGTTGGGGCACTGCGT-------GC-GAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGGCC-CCGGACGCACTCCGCCATGAAC-CGAGGGA--CGCGAGTCCCTCCTT-------------------CTCAAGG---------------------------------------- 'Jattaea tumidula NR_136137_CBS_140208' ------CATTAACGAGTTGCAAAACTCCCAAACCA-CTGCGTA-CTTACCA-TGTCGTTGCTTCGGCGGGCCGCCGCCTCCCCCCC-------------------CGGGGGGGCGCGGTCCTG-----GCCCGAGAGGG--------GGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGCATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCTCAAGTACAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGACC-CCGGGCGACCTCCGCCGTTAAA-CGAGGCG--CGAGAGCGCCCTCCA-------------------CAAGG------------------------------------------ 'Pleurostoma ochraceum NR_136033_CBS_131321' ----ATCATTACTGAGTTGCAAAACT-CCAAACCC-ACGCGTA-CTTACCACTGTCGTTGCTTCGGCGGA-CGCCGCCCCCGGTGTCCATC-------------TCCTTCCCCAGCGGGAGGA-----GGGCCCTGGGT--------CGCCCGCCGGAGGTTAACCAAACTCTTCTGTATCAACTG---TGAAACTCTGAGCATAAG---CTTCAATAAGTAAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCGGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCACCGCGC-------AGCGCGCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGCCTAAAAACCTCGCTCAGGGCGTCCCGGCGCGCGTCTGCCGTAAAA-CACCCCC--TACCA-----------------------------CCTAAAGGTTGACC--------------------------------- 'Pleurostoma ootheca NR_136009_CBS_115329' -----------CTGAGTTGCAAAACTCCCAAACCC-ACGCGTA-TCTACCTATGTCGTTGCTTCGGCGG--CGCCGTCCCCAGGT-------------------------------GCTCCGG-----CGCCGCGGGGG--------CGCCCGCCGGAGGTTCT---AAACTCTCTGTATCACTGT---GGACTCTCTGAGAAAAC----ATACCAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCCC---AGCCTGGCGTTGGGGCACCGCGC-------AGCGCGCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGTGTAACAGCCTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CCCCCCA--ACT-------------------------------ATCAAAGG--------------------------------------- 'Pleurostoma repens NR_135925_CBS_294.39' AGGGATCATTACTGAGTTGCAAAACTCCCAAACCC-ACGCGTACCTTACCTATGTCGTTGCTTCGGCGG--CGCCGCCCACTGGC----------------------CGCTCCGGCGCCCGGG-----------GGGTG--------TGCCCGCCGGAGGTTCTAC-AAACTCTCTGTATCACAGT---GGACTCTCTGAGAAAAAC---ATATCAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCCC---AGCCTGGCGTTGGGGCACCGCGC-------AGCGCGCGCGGGCCCTGAAATACAGTGGCGAG-CCGCCTGGACTCCGAGCGTAGTAGTGTAAAAGCCTCGCTCAGGGCGT-CCGGCGCGCGTC-GCCGTGAAA-ACCCCCA--ACT-------------------------------TCACAAGGTTGACCTCGGATTCAGGTAGGAATACCCGCTGAACTTAA 'Pleurostoma richardsiae CSN1101_ITS4_CS022' ---------------------------------------------------------------------------------GGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCC-GGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CAAAGG----------------------------------------- 'Pleurostoma richardsiae CSN1161_ITS5' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN144_ITS5' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAG{AT}AGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN145_ITS4_CS30' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG----CCCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCC{GT}TAAAA-CACCCCA--ACTCA-----------------------------CCAAA------------------------------------------ 'Pleurostoma richardsiae CSN1925_ITS5_CS31' ---------------------------------------------CTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN493_ITS5' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCC-GGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCC---------------------------------------------------------------------------------------------------------------------------------------------------- 'Pleurostoma richardsiae CSN496_ITS4_CS30' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN500_ITS5' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTC----------------------------------------------------------------------------------------------------------------------------------------------------- 'Pleurostoma richardsiae CSN501_ITS4_CS012' -----------------------------------------------------------------------------------------------------------------------------------------GG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CAAA------------------------------------------- 'Pleurostoma richardsiae CSN514_ITS5_CS31' -----------------------------------------------ACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG----CCCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN947_ITS4_CS30' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGGC---CCCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae NR_135933_CBS_270.33' -----------CCGAGTTGCAAACTCCCAAAACCC-ACCCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG-TTGACCTCGGA-TCAGGTAGGAAT--------------- 'Togniniella acerosa NR_135947_CBS_113726' AGGGATCATTAGCGAGTCTAAAAAGCTCCAACCCC-CTGTGTATCTTACCC-TGTCGTTGCTTCGGCGGGCGGCCCCGACCCTGG----------------------GGCCGCGGCCTACCCC-----CCTCCCGGGGGGGTCCAGGCGCCCGCCGGAGGGACCACCGAAAACACTGAATCAGAAGC--GTACCCTCTGAGAGCTATA-CATAAGACAAGTAAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCTC---GGCCTGGCGTTGGGGCCCTGCGC-----------CTAGCAGGCCCTTAAGTTCAGTGGCGAGCACGCCGGCACCCCGGGCGCAGTAAC----ACTCTCTGCCCGGGGGTTGCCGTCGGGCCTCCGCCGTAAAA-CGAGAGG--CTCTCCC---TCCGGGGGGAGGCCCTCTCAACAAACACATGGTTGACCTCGGA-TCAGGTAGGGATACCCGCTGAACTTAA ; END; [ The following blocks are output data for analysis step 26984 ] BEGIN TREES; TITLE 'Calosphaeriales - ITS phylogeny'; LINK TAXA = TaxaForAnalysisStep26984; TREE Imported_tree_1 = [&R] ((('Pleurostoma repens NR_135925_CBS_294.39':0.01585713,('Pleurostoma ootheca NR_136009_CBS_115329':0.02251214,('Pleurostoma ochraceum NR_136033_CBS_131321':0.12690799,(('Pleurostoma richardsiae CSN493_ITS5':0.0,'Pleurostoma richardsiae CSN500_ITS5':0.0)33:0.0,(('Pleurostoma richardsiae CSN144_ITS5':0.0,('Pleurostoma richardsiae NR_135933_CBS_270.33':0.01072725,('Pleurostoma richardsiae CSN501_ITS4_CS012':0.0,'Pleurostoma richardsiae CSN1101_ITS4_CS022':0.0)62:0.0050118)12:1.6183E-4)12:0.0,('Pleurostoma richardsiae CSN947_ITS4_CS30':0.0,('Pleurostoma richardsiae CSN145_ITS4_CS30':0.0,(('Pleurostoma richardsiae CSN1161_ITS5':0.0,'Pleurostoma richardsiae CSN496_ITS4_CS30':0.0)24:0.0,('Pleurostoma richardsiae CSN514_ITS5_CS31':0.0,'Pleurostoma richardsiae CSN1925_ITS5_CS31':0.0)6:0.0)0:0.0)1:0.0)0:0.0)7:0.0)100:0.14529364)76:0.04553593)57:0.02075785)100:0.28829118,(('Jattaea leucospermi NR_135948_CBS_119343':0.01257953,(((('Jattaea algeriensis NR_135946_STE_U_6201':0.00398845,'Jattaea aurea KT716462_CBS_140209':0.00437425)94:0.04849272,(Jattaea_sp._CSN1152_ITS4_CS30:0.0479987,('Jattaea taediosa NR_136136_MR_3669':0.00933981,('Jattaea aphanospora NR_136007_J.F._06100':0.00963899,'Jattaea discreta NR_145369_CBS_127681':5.859E-4)70:0.01097593)99:0.11794342)35:0.00754617)30:0.0092512,('Jattaea tumidula NR_136137_CBS_140208':0.00365518,'Jattaea ribicola NR_136135_CBS_139779':0.01780105)97:0.0328851)52:0.04703368,('Jattaea mookgoponga EU367449_STE_U_6184':0.0,'Jattaea mookgoponga NR_136008_CBS_120867':0.0)96:0.0373445)36:0.01624844)64:0.10005773,('Calosphaeria pulchella NR_145357_CBS_115999':0.02657523,('Calosphaeria africana NR_135945_STE_U_6182':0.0,'Calosphaeria africana CSN33_ITS5':0.0):0.03630098)100:0.18122179)100:0.08828558)57:0.191680945,'Togniniella acerosa NR_135947_CBS_113726':0.191680945); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr128771] END;