#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 20, 2025; 2:28 GMT

TreeBASE (cc) 1994-2008

Study reference:
Spies C.F., Mostert L., Carlucci A., Moyo P., Van jaarsveld W.J., Du plessis I.L.,
Van dyk M., & Halleen F. 2020. Novel taxa in the Phaeomoniellales and other fungi
associated with wounds, cankers and other symptomatic wood of European and wild
olives in South Africa. Persoonia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S26669]

[ The following blocks are input data for analysis step 27002 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep27002;
        DIMENSIONS NTAX=13;
        TAXLABELS
            'Furfurella luteostiolata NR_164060_CBS_143620'
            'Furfurella nigrescens NR_164061_CBS_143622'
            'Furfurella stromatica NR_164062_CBS_144409'
            Leptosillia_SP._PMM2101_ITS1
            'Leptosillia acerina NR_164063_CBS_143939'
            'Leptosillia macrospora NR_164064_CBS_143627'
            'Leptosillia mayteni NR_166330_CPC_37000'
            'Leptosillia muelleri NR_164065_CBS_143628'
            'Leptosillia pistaciae NR_160064_CBS_128196'
            'Leptosillia slaptonensis NR_164066_CBS_145296'
            'Leptosillia wienkampii NR_164067_CBS_143630'
            'Liberomyces macrosporus NR_154605_CCF_4028'
            'Liberomyces saliciphilus NR_137570_CCF_4020'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58022]

	TITLE 'Leptosillia - ITS alignment';
	LINK TAXA = TaxaForAnalysisStep27002;
	DIMENSIONS NCHAR=525;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520        ]
[                                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
'Furfurella luteostiolata NR_164060_CBS_143620'   CAGAGTACTAT---ACTCCTAAACCC-ATGTGAACTTACCA-GTTTCGTTGCTTCGGCGGGCCTGCGTATACGCG----------CCTCGCGGC-------------GTGCTGCGCGCTCAAGGCCCGCCGAGGGT-CCCAAACTCT-TGA---AATCTTAGTTGGCTTCTGAGCGTAATTATTTAATTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTAATAGTATTCTGTTAGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTAACTGCTTGGCGTTGGGGCATTACCGT----------ACGGTAAGCCCCGAAAATCAGTGGCAAGATCAG-TCATCTCTGAGCGTAGTAAA----TCTCT--TCTCGCTTTGGTAAGGTGTCCTGGTTGCAGCCAACAAACCCA--ATA-TTTTCTGAT
'Furfurella nigrescens NR_164061_CBS_143622'      CAGAGTACTAT---ACTCCTAAACCC-ATGTGAACTTACCA-GTTTCGTTGCTTCGGCGGGCCTGCGTATACGCG----------CCTCGCGGC-------------GTGTTGCGCGCTCAGGGCCCGCCGGGGGT-CCCAAACTCT-TGA---AATCTTAGTTGGCTTCTGAGCGTAATTATTTAATTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTAATAGTATTCTGTTAGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTAACTGCTTGGTGTTGGGGCATTACCGC---------AACGGTAAGCCCCGAAAACCAGTGGCAAGATCAG-TCATCTCTGAGCGTAGTAAA----TCTCT--TCTCGCTTTGGTAAGGTGTCCTGGTTGCAGCCAGCAAACCCA--TTA-TTTTCTGAT
'Furfurella stromatica NR_164062_CBS_144409'      CAGAGTACTAT---ACTCCTAAACCC-ATGTGAACTTACCA-GTTTCGTTGCTTCGGCGGGCCTGCGTATGCGCG---------CCCCCGCGGC-------------GTGTTGCGCGCTCATGGCCCGCCGGGGGT-CCCAAACTCT-TGA---AATCTTAGTTGGCTTCTGAGCGTAATTATTTAATTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTAATAGTATTCTGTTAGGCATGCCTGTTCGAGCGTCATTTCAACTCTCAAGCTTAACTGCTTGGCGTTGGGGCATTACCGT----------ACGGTAAGCCCCGAAAATCAGTGGCAAGATCAG-TCATCTCTGAGCGTAGTAAA----TCTCT--TCTCGCTTTGGTAAGGTGTACTGGTTGCAGCCAGCAAACCCA--TTA-TTTTCTGAT
Leptosillia_SP._PMM2101_ITS1                      -----------------------------------TTACCA-GTTTTGTTGCTTCGGCGGG{AC}TGCGCCTCTCGACGTCTCCCTCCCCCCTCGGGGGCAGGCTGCCGTCCGGGGCGCGCT-ACGGCCCGCCGGGGGT-CTCAAACTCT-------ATTATTACGGATATTCTGAAGTAAAAATATAAATAAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAGTAGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCTACCGCTTGGTGTTGGGA----GCCACATACCGCCTGGCGGTAACTCCCCAAATGCAGTGGCAGGATCAGGGCATCTCTGAGCGTAGTAAA----TCTCTTATCTCGCTTTGGCAAGGTGTCCTGGTAGTAGCCATCAAACCTA-TTAT-CTATTGAAT
'Leptosillia acerina NR_164063_CBS_143939'        CAGAGTACTTT---ACTCATAAACCA-CTGTGAACTTACC---TTCTGTTGCTTCGGCTGGGCTGTCCCCCGGAC---------CTCTCACGA--------GGCCC---GGGGCGGCGTCAAGGCCCGCCGAGGGACCCTAAACTCT-TGT---ATATATATGGAAATTCTGAGA--AACGATTTAATAAATCAAAACCTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAGTAGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCTTTATTGCTTGGAGTTGGGACATTACCGC-----CTCCGGCGGCAAGTCCTCAAATATAGTGGCGAGGCCGGATGTCCTCTAAGCGTAGTAAT----CTTTTTTTCTCGCTTTGGCTAGGCAT-CTGGTTGCAGCCAG-AAACCAC-TTTA-TTTTTTAAT
'Leptosillia macrospora NR_164064_CBS_143627'     CAGAGTACTTTAAAACTCATAAACCC-CTGTGAACTTACCA--TTTTGTTGCTTCGGCGGGCTATGCCCGACCCT---CGCCCACCCCCTCGGGGGAGGCAGGGGAGAGGGCGCCCTTTAGGGGCCCGCCGGAGGT-CTTAAACTAT-CATCTATAACGTATGGGCATTCTGAATG-AGAAAACAAATAAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAGTAGGCATGCCTGTTCGAGCGTCATTTCACCCCTCAAGCCTCGTCGCTTGGTGTTGGGACGTTACCACGCGCCTGCGCGGGGTAAGTCCTCAAATGCAGTGGCAAGATCAGGGCACCTCTGAGCGTAGTAGAAACCTATTTTATCTCGCTTTGGCTAGGTGTCCCGGTGGTAGCCAT-AAACCTA-TTTT-TCTTTGAAT
'Leptosillia mayteni NR_166330_CPC_37000'         CAGAGTATCTT---ACTCATAAACCC-CTGTGAACTTACCA--TTCTGTTGCTTCGGCCGGGTTCGC-------------------------------------------------------GCCTGGCCGAGGGAAACTAAACTCT-TGT---ATCTTTTAAGAAATTCTGAGAA-AACAAACAAATAAATCAAAACCTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAGTAGGCATGCCTGTTCGAGCGTCATTTCACCCCTCAAGCCTAGTTGCTTGGTGTTGGGACGTTACCGC------GTCAGCGGTAAGTCCTCAAATACAGTGGCAAGATCAGAACAACTCTGAGCGTAGTAAA----TCTTTTATCTCGCTTTGGCTAGGTGTTCTGGTTGCAGCCATCAAACCTA-TTTA-ATTTTGAAT
'Leptosillia muelleri NR_164065_CBS_143628'       CAGAGTACTTT---ACTCATAAACCA-CTGTGAACTTACC---TTCTGTTGCTTCGGCTGGGCTGTCCCCCGGAC---------CTCTCACGA--------GGCCT---GGGGCGGCGTCAAGGCCCGCCGAGGGACCCTAAACTCT-TGT---ATATATATGGAATTTCTGAGA--AACGATTTAATAAATCAAAACCTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAGTAGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCTTCATTGCTTGGAGTTGGGACATTACCGC-----CTCCGGCGGCAAGTCCTCAAATATAGTGGCGAGGCCGGATGTCCTCTAAGCGTAGTAAT----CTTCTTTTCTCGCTTTGGCTAGGCGT-CTGGTTGCAGCCAG-AAACAAC-TTTATTTTTTTAAT
'Leptosillia pistaciae NR_160064_CBS_128196'      CAGAGTACTTT-ACACTCACAAACCC-CTGTGAACTTACCACTTTTTGTTGCTTCGGCGGGCTGCATCTCGTCGC---------CTCCTTCGG--------GGGGTGAGGTGGTGCGCTAAAGGCTCGCCGAGGGTACCTAAACTCT-TATT--ATTTTACTGGTTATTCTGAATCTAAAAGATAAATAAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTAATTGCTTGGTGTTGGGAGCTTACCCC--------CTGTGGTAACTCCCTAAATCTAGTGGCAAGATCAGAACATCTCTGAGCGTAGTAAA-----TTTTTATCTCGCTTTGGTCAGGTGTTTTGGTACTAGCCATCAAACCTA-TTTTATTTCTGAAT
'Leptosillia slaptonensis NR_164066_CBS_145296'   CAGAGTACTTT-ACACTCATAAACCCTTTGTGAACTTACTA--TTTTGTTGCTTCGGCGGGCTGTTCCTGACCCC---------TCCTCGCGG--------AGGAT---ACGGTACGTTAAAGGTCCGCCGAGGGTACCTAAACTCTCTAT---TATTACTAATGAATTCTGAATC--GAAAACAAATAAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAATAGGCATGCCTGTTCGAGCGTCATTTCACCCCTCAAGCTTTACTGCTTGGTGTTGGGATGTTACCGC------GCAAGCGGTAAGTCCTTAAATCTAGTGGCAAGATCAGGGCATCTCTGAGCGTAGTAAA----TCTTTTATCTCGCTTTGGTCAGGTGTCCCGGTGGTAGCCAT-AAACCTATTTTT-ATTCTGAAT
'Leptosillia wienkampii NR_164067_CBS_143630'     CAGAGTACTTT-ACACTCATAAACCC-CTGTGAACTTACCA-TTTTTGTTGCTTCGGCGGGCTGTGCCTGA-CCC---------TCTTCGTGG--------GGGAT---ACGGTACGCTAAAGGTCCGCCGAGGGTACCTAAACTCT-TAT---CATTTTTAATGAATTCTGAATT--AAAAACAAATAAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAATAGGCATGCCTGTTCGAGCGTCATTTCACCCCTCAAGCTTCATTGCTTGGTGTTGGGACGTTACCGC------GCAAGCGGTAAGTCCTCAAATCCAGTGGCAAGATCAGGGCATCTCTGAGCGTAGTAAA----TCTTTTATCTCGCTTTGGTCAGGTGTCCTGGTGGTAGCCAT-AAACCTA-TTTT-ATTTTGAAT
'Liberomyces macrosporus NR_154605_CCF_4028'      CAGAGTACTTTAAAACTCATAAACCC-CTGTGAACTTACCA--TTTTGTTGCTTCGGCGGGCTATGCCCGACCCT---CGACCACCCCCTCGGGGGAGGC-GGGGAGAGGGCGCCCTTTAGGGGCCCGCCGGAGGT-CTTAAACTAT-CATCTATAACGTATGGGCATTCTGAATG-AGAAAACAAATAAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAGTAGGCATGCCTGTTCGAGCGTCATTTCACCCCTCAAGCCTCGTCGCTTGGTGTTGGGACGTTACCACGCGCCTGCGCGGGGTAAGTCCTCAAATGCAGTGGCAAGATCAGGGCACCTCTGAGCGTAGTAGAAACCTATTTTATCTCGCTTTGGCTAGGTGTCCCGGTGGTAGCCAT-AAACCTA-TTTT-TCTTTGAAT
'Liberomyces saliciphilus NR_137570_CCF_4020'     CAGAGTACTTT-ACACTCATAAACCC-CTGTGAACTTACCA-TTTTTGTTGCTTCGGCGGGCTGTGCCTGACCCC---------TCCTCGTGG--------GGGAT---ACGGTACGCTAAAGGTCCGCCGAGGGTACCTAAACTCT-TAT---CATTTTTAATGAATTCTGAATT--AAAAACAAATAAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTATTAGTATTCTAATAGGCATGCCTGTTCGAGCGTCATTTCACCCCTCAAGCTTCATTGCTTGGTGTTGGGACGTTACCGC------GCAAGCGGTAAGTCCTCAAATCCAGTGGCAAGATCAGGGCATCTCTGAGCGTAGTAAA----TCTTTTATCTCGCTTTGGTCAGGTGTCCTGGTGGTAGCCAT-AAACCTA-TTTT-ATTTTGAAT
;
END;

[ The following blocks are output data for analysis step 27002 ]
BEGIN TREES;
      TITLE 'Leptosillia - ITS phylogeny';
      LINK TAXA = TaxaForAnalysisStep27002;
      TREE Imported_tree_1 = [&R] (('Furfurella nigrescens NR_164061_CBS_143622':1.0E-8,('Furfurella stromatica NR_164062_CBS_144409':0.01216346,'Furfurella luteostiolata NR_164060_CBS_143620':0.01069616)77:0.00918905)100:0.133374925,(((('Liberomyces macrosporus NR_154605_CCF_4028':0.0020547,'Leptosillia macrospora NR_164064_CBS_143627':1.0E-8)100:0.13944161,('Leptosillia slaptonensis NR_164066_CBS_145296':0.04128518,('Leptosillia wienkampii NR_164067_CBS_143630':0.00224697,'Liberomyces saliciphilus NR_137570_CCF_4020':1.0E-8)74:0.00271029)88:0.0371957)51:0.02540919,('Leptosillia pistaciae NR_160064_CBS_128196':0.09698279,Leptosillia_SP._PMM2101_ITS1:0.15434604)34:0.02295589)50:0.04107448,('Leptosillia mayteni NR_166330_CPC_37000':0.0438279,('Leptosillia acerina NR_164063_CBS_143939':0.00328637,'Leptosillia muelleri NR_164065_CBS_143628':0.01075919):0.20970953)100:0.04302594)66:0.133374925);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr128774]


END;