#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 23:46 GMT

TreeBASE (cc) 1994-2008

Study reference:
Spies C.F., Mostert L., Carlucci A., Moyo P., Van jaarsveld W.J., Du plessis I.L.,
Van dyk M., & Halleen F. 2020. Novel taxa in the Phaeomoniellales and other fungi
associated with wounds, cankers and other symptomatic wood of European and wild
olives in South Africa. Persoonia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S26669]

[ The following blocks are input data for analysis step 27007 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep27007;
        DIMENSIONS NTAX=12;
        TAXLABELS
            'Didymosphaeria rubi-ulmifolii CBS_100299'
            'Didymosphaeria rubi-ulmifolii CBS_115.92'
            'Didymosphaeria rubi-ulmifolii CBS_122319'
            'Didymosphaeria rubi-ulmifolii CBS_122320'
            'Didymosphaeria rubi-ulmifolii CBS_587.84'
            Didymosphaeria_sp._CSN1150_ITS5_CS29
            Didymosphaeria_sp._CSN1932_ITS4_CS30
            Didymosphaeria_sp._CSN618_ITS4_CS30
            Didymosphaeria_sp._CSN634_ITS4_CS022
            'Didymosphaeria variabile NR_137006_STE_U_6311'
            'Paraconiothyrium fuckelii CBS_797.95'
            'Paraphaeosphaeria michotii MFLUCC_13_0349'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58038]

	TITLE 'Didymosphaeria - ITS alignment';
	LINK TAXA = TaxaForAnalysisStep27007;
	DIMENSIONS NCHAR=533;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530      ]
[                                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
'Didymosphaeria rubi-ulmifolii CBS_100299'        TCTATTC--CATGAGGTGCGGTCGCGGCCCTCGGCGGGAGCATCAGCT------------GCCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGCGGGGCAACCTGCCGTTGGAACCTATCAAAACC-TTTTTTTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATGCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
'Didymosphaeria rubi-ulmifolii CBS_115.92'        TCTATTC--CATGAGGTGCGGTCGCGGCCCTCGGCGGGAGCAACAGCT------------GCCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGCGGGGCAACCTGCCGTTGGAACCTATCAAAACC-TTTTTTTGCATCTAGCATTACCTGTTCTGATAAAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
'Didymosphaeria rubi-ulmifolii CBS_122319'        TCTATTC--CATGAGGTGCGGTCGCGGCCCTCGGCGGGAGCAACAGCT------------ACCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGCGGGGCAACCTGCCGTTGGAACCTATCAAAACC-TTTTTTTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
'Didymosphaeria rubi-ulmifolii CBS_122320'        TCTATTC--CATGAGGTGCGGTCGCGGCCCTCGGCGGGAGCAACAGCT------------ACCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGCGGGGCAACCTGCCGTTGGATCCTATCAAAACCTTTTTTTTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
'Didymosphaeria rubi-ulmifolii CBS_587.84'        TCTATTC--CATGAGGTGCGGTCGCGGCCCTCGGCGGGAGCAACAGCT------------ACCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGTGGGGCAACCTGCCGTTGGAACCTATCAAAACC-TTTTTTTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
Didymosphaeria_sp._CSN1150_ITS5_CS29              ---------------------------------------------GCT------------ACCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGCGGGGCAACCTGCCGTTGGAACCTATCAAAACCTTTTTTTTGCATCTAGTACTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
Didymosphaeria_sp._CSN1932_ITS4_CS30              TCTATTC--CATGAGGTGTGGTCGCGGCCCCCGGGGGGGCTA--AACT------------CCCCCAGGGCGGTAGAGGTAACACTTTCACGCGCCACATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGTGGGGCAACCTGCCGCTGGAACTTAACAATAAC-CTTTTTTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTTTGCGCGTGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
Didymosphaeria_sp._CSN618_ITS4_CS30               TCTATTC--CATGAGGTGTGGTCGCGGCCCCCGGGGGGGCTA--AACT------------CCCCCAGGGCGGTAGAGGTAACACTTTCACGCGCCACATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGTGGGGCAACCTGCCGCTGGAACTTAACAATAAC-CTTTTTTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTTTGCGCGTGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
Didymosphaeria_sp._CSN634_ITS4_CS022              TCTATTC--CATGAGGTGCGGTCGCGGCCCTCGGCGGGAGCAACAGCT------------GCCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGCGGGGCAACCTGCCGTTGGAACCAAT-AAAACC-TTTTTTTGCATCTAGCATTACCTGTTCTGATAAAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCG{CG}GCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
'Didymosphaeria variabile NR_137006_STE_U_6311'   TCTATTC--CATGAGGTGTGGTCGCGGCCCCCGGGGGGGCTA--AACT------------CCCCCAGGGCGGTAGAGGTAACACTTTCACGCGCCACATGTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGTGGGGCAACCTGCCGCTGGAACTTAACAATAAC-CTTTTTTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTTTGCGCGTGGACTCGTCCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACA-TTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
'Paraconiothyrium fuckelii CBS_797.95'            TCCATCT--CACCAGGTGTGGTTGCGGCCCCCGGGGGCGTGGGCGTCTTCTGGCGTCCTCTCTCCCGGGCGGTAGGGGTAACACTCTCACGCGCCACATTTCTGAATCCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGTGGGGCAACCTGCCGCTGGAACTTATCAAA----CTCTTCTGCATCTAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTTTGCGCGTGGACTCG-CCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCACATTTGCGCTTCTCGAGGTGCGCGGCCCGCGTCCACGAAGCAACATTACCGTC
'Paraphaeosphaeria michotii MFLUCC_13_0349'       TCCATCTAAAACCAGGTGCGGTCGCGGCCTCCGGGTGAAAG----------------------CCTGGGTGG--------------TTTCGCGCCGCATTCCTGCACCCTTTTTTTACGAGCACCTTT-GTTCTCCTTCGGCGGGGCAACCTGCCGCTGGAACTTAATAAAAC--CTTTTTTGCATCTAGCATTACCTGTTCTGATACAAATAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGTGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCG-CCCCAAATTCATTGGCAGCGGTCTTTGCCTCCTCTCGCGCAGCACAATTGCGTCTGCGAGGGGGCGTGGCCCGCATCCACGAAGCAACATTACCGTC
;
END;

[ The following blocks are output data for analysis step 27007 ]
BEGIN TREES;
      TITLE 'Didymosphaeria - ITS phylogeny';
      LINK TAXA = TaxaForAnalysisStep27007;
      TREE Imported_tree_1 = [&R] (('Paraconiothyrium fuckelii CBS_797.95':0.01375283,(('Didymosphaeria rubi-ulmifolii CBS_587.84':0.0,(Didymosphaeria_sp._CSN1150_ITS5_CS29:0.0048652,(('Didymosphaeria rubi-ulmifolii CBS_100299':0.00403086,(Didymosphaeria_sp._CSN634_ITS4_CS022:0.00198571,'Didymosphaeria rubi-ulmifolii CBS_115.92':0.0)76:0.00200025)66:0.00193542,('Didymosphaeria rubi-ulmifolii CBS_122320':0.00196325,'Didymosphaeria rubi-ulmifolii CBS_122319':0.0)46:1.0E-8)28:0.0)67:0.00195689)96:0.0374901,((Didymosphaeria_sp._CSN618_ITS4_CS30:0.0,Didymosphaeria_sp._CSN1932_ITS4_CS30:1.0E-8)33:0.0,'Didymosphaeria variabile NR_137006_STE_U_6311':0.0):0.01000693)94:0.03296846)76:0.05337396,'Paraphaeosphaeria michotii MFLUCC_13_0349':0.05337396);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr128794]


END;