#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 23:48 GMT

TreeBASE (cc) 1994-2008

Study reference:
Spies C.F., Mostert L., Carlucci A., Moyo P., Van jaarsveld W.J., Du plessis I.L.,
Van dyk M., & Halleen F. 2020. Novel taxa in the Phaeomoniellales and other fungi
associated with wounds, cankers and other symptomatic wood of European and wild
olives in South Africa. Persoonia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S26669]

[ The following blocks are input data for analysis step 27010 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep27010;
        DIMENSIONS NTAX=12;
        TAXLABELS
            'Allophoma minor CBS_325.82'
            'Allophoma oligotrophica LC_6246'
            'Heterophoma nobilis GU237877_CBS_507.91'
            'Heterophoma novae-verbascicola GU237753_CBS_114.93'
            'Heterophoma novae-verbascicola GU237774_CBS_127.93'
            'Heterophoma poolensis MH854684_CBS_113.20'
            'Heterophoma poolensis MH855958_CBS_253.38'
            Heterophoma_sp._CSN1929_ITS4_CS30
            'Heterophoma sylvatica GU237781_CBS_135.93'
            'Heterophoma sylvatica GU237907_CBS_874.97'
            'Heterophoma sylvatica NR_136006_CBS_874.97'
            'Heterophoma verbascicola NR_158268_CGMCC_3.18364'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58041]

	TITLE 'Heterophoma - ITS alignment';
	LINK TAXA = TaxaForAnalysisStep27010;
	DIMENSIONS NCHAR=465;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                              10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460     ]
[                                                               .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
'Allophoma minor CBS_325.82'                           ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTTCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAATTGAAATCAGCGTCTGAAAAAACTTTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAGCAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTTTACACTC
'Allophoma oligotrophica LC_6246'                      ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTTCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAATTGAAATCAGCGTCTGAAAAACT-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCTCGCCTTTTGCGCGCAGACTCGCCTCAAAACGATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCACAACGACGACGTCCAAAAAGTACATTTTT-ACGCTC
'Heterophoma nobilis GU237877_CBS_507.91'              ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGAATGGACAAAACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAACAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCCTTGCACTCATAACGTCGACGTCCAAAAAGTACATTTTTAACACTC
'Heterophoma novae-verbascicola GU237753_CBS_114.93'   ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAATAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
'Heterophoma novae-verbascicola GU237774_CBS_127.93'   ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAACAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
'Heterophoma poolensis MH854684_CBS_113.20'            ATCATTACCTAGAGTCGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAATAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
'Heterophoma poolensis MH855958_CBS_253.38'            ATCATTACCTAGAGTCGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAATAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
Heterophoma_sp._CSN1929_ITS4_CS30                      ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGATTGGAC-ACATTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAAAAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Heterophoma sylvatica GU237781_CBS_135.93'            ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAATAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
'Heterophoma sylvatica GU237907_CBS_874.97'            ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAATAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
'Heterophoma sylvatica NR_136006_CBS_874.97'           ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACACTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAATAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
'Heterophoma verbascicola NR_158268_CGMCC_3.18364'     ATCATTACCTAGAGTTGCGGGCTTTGCCTGCCATCTCTTACCCATGTCTTTTGAGTACCTTCGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACATTTAAACCCTTTGTAGTTGCAATCAGCGTCTGAATAAAC-TTAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCCTTGCTTGGTGTTGGGTGTTTGTCTCGCC-TCTGCGCGCAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAAGTACATTTTT-ACACTC
;
END;

[ The following blocks are output data for analysis step 27010 ]
BEGIN TREES;
      TITLE 'Heterophoma - ITS phylogeny';
      LINK TAXA = TaxaForAnalysisStep27010;
      TREE Imported_tree_1 = [&R] (('Allophoma minor CBS_325.82':0.00177022,'Allophoma oligotrophica LC_6246':0.0146742):0.00695773,('Heterophoma nobilis GU237877_CBS_507.91':0.01322026,('Heterophoma novae-verbascicola GU237774_CBS_127.93':1.0E-8,(('Heterophoma verbascicola NR_158268_CGMCC_3.18364':0.0,Heterophoma_sp._CSN1929_ITS4_CS30:0.00805134)33:0.00221241,('Heterophoma sylvatica NR_136006_CBS_874.97':0.0,('Heterophoma sylvatica GU237907_CBS_874.97':0.0,('Heterophoma sylvatica GU237781_CBS_135.93':1.0E-8,('Heterophoma novae-verbascicola GU237753_CBS_114.93':1.0E-8,('Heterophoma poolensis MH854684_CBS_113.20':1.0E-8,'Heterophoma poolensis MH855958_CBS_253.38':0.0)73:0.00220391)13:1.0E-8)8:0.0)12:1.0E-8)38:0.0)13:0.00220397)22:0.00168518)98:0.00695773);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr128797]


END;