#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 20, 2025; 2:22 GMT

TreeBASE (cc) 1994-2008

Study reference:
Spies C.F., Mostert L., Carlucci A., Moyo P., Van jaarsveld W.J., Du plessis I.L.,
Van dyk M., & Halleen F. 2020. Novel taxa in the Phaeomoniellales and other fungi
associated with wounds, cankers and other symptomatic wood of European and wild
olives in South Africa. Persoonia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S26669]

[ The following blocks are input data for analysis step 27026 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep27026;
        DIMENSIONS NTAX=14;
        TAXLABELS
            'Loramyces macrosporus JN033383_KACC45617'
            'Mollisia heterosperma KP768364_CBS_292.59'
            'Phialocephala aylmerensis KP768366_NB543'
            'Phialocephala catenospora KP768360_NB432'
            'Phialocephala dimorphospora KP972464_DAOM87232'
            'Phialocephala mallochii KP768363_NB611'
            'Phialocephala nodosa KP768357_NB475'
            'Phialocephala oblonga KP768370_NB561'
            'Phialocephala oblonga KP768373_NB377'
            'Phialocephala piceae EU434836_CdV_2_2.4b'
            'Phialocephala repens EU434847_MUCL1849'
            'Phialocephala scopiformis KP972465_CBS_468.94'
            Phialocephala_sp._CSN1185_ITS5_CS32
            Phialocephala_sp._CSN630_ITS5
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58064]

	TITLE 'Phialocephala - ITS alignment';
	LINK TAXA = TaxaForAnalysisStep27026;
	DIMENSIONS NCHAR=527;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530]
[                                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
'Loramyces macrosporus JN033383_KACC45617'         ATCATTACCC----------------------------------------AAAAGGATACCCTCGTGGTATACC-CCATCCGTGTCTATATACTCTTGTTGCTTTGGCAGGCCGTGGTCTCGACCCTGTGG-----GCTTTGCCTGCATGTGCCTGCCAGAGGACCAAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCTCTATCAACCTACACGCTCCGCGTGGAATTGGGGCCTGCGGTCACCTGCAGCCCTAGAACCCAACAGCGATACCGAGTGGTCCTCAGCGTAGTACAT-ACCCCGCTACAGGCCTCCTCTGGTGTTCTGCCATAA-ATGGTGCAAGCCGTTAACAAGGTTGACCT
'Mollisia heterosperma KP768364_CBS_292.59'        --CATTAATCAGTGGATCCGGC---------------GGGGTACTCTT--AGGAGGATCCCCGCCGGGTAGACCTCCACCCGTGTTTATCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCTCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATATTAGTGATGTCTGAGAACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTAGCGTGGTATTGGGGCACGCGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAA-CC--CCCAACTTCTTA---AGGT--ACCT
'Phialocephala aylmerensis KP768366_NB543'         --CATTAATCAGTGGATCCGGT---------------CGGGGACTCTC--CGGGG--GCCCCGTCGGGTAGACCTCCACCCGTGCTTACCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCTCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATATTAGTGATGTCTGAGAACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTGTTGGGGCACGCGGT--CCCGCGGCCCTCAAAATTAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGCGGCTCGCCAGAA-CC--CCCAACTTCTCA---AGGT--ACCT
'Phialocephala catenospora KP768360_NB432'         --CATTAATCAGTGGATCCGGC---------------GGGGAAC-------------TCCCCGCCGGGTAGACCTCCACCCGTGCCTATCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCTCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATTTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTATTGGGGCACGCGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAA-CC--CCCAACTTCTCA---AGGT--ACCT
'Phialocephala dimorphospora KP972464_DAOM87232'   ATCATTAATCAGTGGATCCGGC---------------GGGGGACTCGTAAAAGAGGATCCCCGTCGGGTAGACCTCCACCCGTGCCTACCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCTCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATATTAGTGATGTCTGAGAACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTATTGGGGCACGCGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAA-CC--CCCAACTTCTCA---AGGTTGACCT
'Phialocephala mallochii KP768363_NB611'           --CATTAATCAGTGGATCCGGC---------------GGGGAACC------------CCCCCGCTGGGTAGACCTCCACCCGTGCTTACCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCTCTGTTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATTTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTAGCGTGGTATTGGGGCACGCGGT--CCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCTCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAA-CC--CCCAACTTCTTA---AGGT--ACCT
'Phialocephala nodosa KP768357_NB475'              --CATTAATCAGTGGATCCGGC---------------GGGGACC-------------TCCCCGCCGGGTAGACCTCCACCCGTGCCTATCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCTCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATTTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTATTGGGGCACGCGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAACCC--CCCAACTTCTCA---AGGT--ACCT
'Phialocephala oblonga KP768370_NB561'             --CATTAATCGGTGGATCTGGTACTGGGGGCCAGCGGGAGCGGCCGTG--AGCAAAAATCCCGCCGGATAGACC-ACACCCGTGTTTACCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCGCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATTATAGTGATGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTATTGGAGCACGCGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAA-CC--CCCAACTTCTCA---AGGT--ACCT
'Phialocephala oblonga KP768373_NB377'             --CATTAATCGGTGGATCTGGTACTGGGGGCTAGCGGGAGCGGCCGTG--AGCAAAAATCCCGCCGGATAGACC-ACACCCGTGTTTACCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCGCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATTATAGTGATGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTATTGGGGCACGCGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAA-CC--CCCAACTTCTCA---AGGT--ACCT
'Phialocephala piceae EU434836_CdV_2_2.4b'         ATTACAAGTGAGGCCGCCGAAC---------------ACCGGTC------AAACGGTGGGGAGGCGGCTAACAC-CCACCCGTGTCTACATACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTGCGGGCTCTGCTCTGCTCGTGTGTGCCCGCCAGAGGACCAAACTCTGAATGTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATT-TAACCACTCACGCCTGGCGTGGTGTTGGGGCACGCGGT--CTCGCGGCCCTCGAAAGCAGTGGCGGCGCCGGTGGGCTCTAAGCGTAGTACATACTCCCGCTATAGAGTTCCCTCGGTGGCTCGCCAGAA-CC--CCCTAATTTTTAC--CGGTTGACCT
'Phialocephala repens EU434847_MUCL1849'           --CATTAATCAGTGGATCCGGC---------------GGGGTACTCTT--CGGAGGATCCCCGTCGGGTAGACCTCCACCCGTGTTTATCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCTCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATATTAGTGATGTCTGAGAACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTATTGGGGCACGCGGT--TTCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCTCGGTGGCTCGCCAGAA-CC--CCCAACTTCTTA---AGGTTGACCT
'Phialocephala scopiformis KP972465_CBS_468.94'    ATCATTAATAAGGATGCTGGAA---------------GGGGGTGAGCT--CACGCCTCCCCTAGACGGTATACC-CCACCCGTGTCTATCTACTCTTGTTGCTTTGGCAGGCCGTGGCCTC--CACTGTGG-----GCTCTGCCTGCATGTGCCTGCCAGAGGATTAAACTCTGAATTTTAGTGATGTCTGAGAACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTGTTGGGGTTTGCGGT--TCCGCAGCCCCTAAAATCAGTGGCGGTGCCGGTGGGCTCTACGCGTAGTAAATCTCCTCGCGATTGAGTTCCCCCGGTGGCCTGCCAGAA-CC--CCCAATTTTTAC---AGGTTGACCT
Phialocephala_sp._CSN1185_ITS5_CS32                ------------------------------------------------------------CCCTCCCGCGATTC-CCACCCGTGTCTACCTACTCTTG{AT}TGCTTTGGCAGGCCGTGGCCTC--CACTGCGG-----GCGCTGCTCGTATGTGCCTGCCAGAGGACTCAACTCTGTATGTTAGTGATGTCTGAGTACTAT-TAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTACAACCACTCACGCCTGGCGTGGTGTTGGGGCACGCGGT--CGCGCGGCCCCCAAAACCAGTGGCGGTGCCGGTGGGCTCTAAGCGTAGTACATCTCCTCGCTCCAGGG-CCCCTCGGTGTCTCGCCAGAA-CC--CCCAATTCTTC----AGGTTGACCT
Phialocephala_sp._CSN630_ITS5                      ATCATTAATCGGTGGATCTGGTACTGGGGGCCAGCGGGAGCGGCCGTG--AGCAAAAATCCCGCCGGATAGACC-ACACCCGTGTTTACCTACTCTTGTTGCTTTGGCGGGCCGTGGCCTC--CACTACGG-----GCGCTGCTCGTACGTGCCCGCCAGAGGACCAAACTCTGAATTATAGTGATGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGACCACTCACGCCTGGCGTGGTATTGGGGCACGCGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTAGGCCCTAAGCGTAGTAAATCTCCTCGCTATAGGGTCCTCCCGGTGGCTCGCCAGAA-CC--CCCAACTTCTCA---AGGTTGACCT
;
END;

[ The following blocks are output data for analysis step 27026 ]
BEGIN TREES;
      TITLE 'Phialocephala - ITS phylogeny';
      LINK TAXA = TaxaForAnalysisStep27026;
      TREE Imported_tree_1 = [&R] (('Phialocephala scopiformis KP972465_CBS_468.94':0.11340026,(Phialocephala_sp._CSN1185_ITS5_CS32:0.06747316,('Phialocephala piceae EU434836_CdV_2_2.4b':0.13330712,('Phialocephala dimorphospora KP972464_DAOM87232':4.8119E-4,('Phialocephala aylmerensis KP768366_NB543':0.02340439,(('Mollisia heterosperma KP768364_CBS_292.59':0.00427768,'Phialocephala repens EU434847_MUCL1849':0.00446897)56:0.00892745,(('Phialocephala oblonga KP768373_NB377':0.00169503,('Phialocephala oblonga KP768370_NB561':0.00210767,Phialocephala_sp._CSN630_ITS5:0.00209533)44:3.9148E-4)100:0.04554533,('Phialocephala mallochii KP768363_NB611':0.0174482,('Phialocephala catenospora KP768360_NB432':1.0E-8,'Phialocephala nodosa KP768357_NB475':0.00231714)55:0.00442011)30:0.00205133)22:0.01134311)10:1.0E-8)26:0.00633149)88:0.08721331)53:0.01810764):0.0451496)62:0.193823505,'Loramyces macrosporus JN033383_KACC45617':0.193823505);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr128842]


END;