#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on January 19, 2026; 11:39 GMT TreeBASE (cc) 1994-2008 Study reference: Tsutsumi C., Yatabe Y., Hirayama Y., Chiou W., & Kato M. 2021. Molecular analyses of the disjunctly distributed Osmunda regalis and O. japonica (Osmundaceae), with particular reference to introgression and hybridization. Plant Systematics and Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S26988] [ The following blocks are input data for analysis step 27369 ] BEGIN TAXA; TITLE TaxaForAnalysisStep27369; DIMENSIONS NTAX=23; TAXLABELS Claytosmunda_claytoniana_CL2 Osmunda_japonica_J1aJ5J6J7J8 Osmunda_japonica_J1b Osmunda_japonica_J2a Osmunda_japonica_J2b Osmunda_japonica_J3J4 Osmunda_lancea_L1a Osmunda_lancea_L1bL2 Osmunda_lancea_L3 Osmunda_regalis_R10 Osmunda_regalis_R11R12 Osmunda_regalis_R13a Osmunda_regalis_R13b Osmunda_regalis_R14aR16a Osmunda_regalis_R14b Osmunda_regalis_R15 Osmunda_regalis_R16b Osmunda_regalis_R17R18 Osmunda_regalis_R1R2R3 Osmunda_regalis_R4 Osmunda_regalis_R5R6R7R8R9 Plenasium_banksiifolium_A Plenasium_banksiifolium_B ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M56342] TITLE Osmundaceae_L519; LINK TAXA = TaxaForAnalysisStep27369; DIMENSIONS NCHAR=712; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Claytosmunda_claytoniana_CL2 AACAGGTCTCCTCCCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTTTGGGCTTTCCAGCTTTCTTTGCTATGTATCCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGTATCCTCTGTCTCTTTGTCGGTCAGATCTGGTAGCAAGAGCTGTCTAATGAGATCGAGGCTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGATCGTTCTAACAGGCCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCCGCGTTTGTTGATAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ATGCAGCAGGCA-TTTTTTCTGTCTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTATGCAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACCAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTGTGGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTCTGCT-GTGCGAAGTTCAGAGATGGACGTCTGATGAAGC Osmunda_japonica_J1aJ5J6J7J8 AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGCCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTGGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_japonica_J1b AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGTTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_japonica_J2a AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGCCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_japonica_J2b AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGCCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTAGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_japonica_J3J4 AACAGGTCTCCTCCTC-TCCTCCTCCTCCT------CCTCCTGTTTTGGGTTTTTCAGTTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_lancea_L1a AACAGGTCTCCTCCTC-TCCTCCTCCTCCT------CCTCCTGTTTTGGGTTTTTCAGTTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCATTTTTTTCTGTTTCTGCAGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACTTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_lancea_L1bL2 AACAGGTCTCCTCCTC-TCCTCCTCCTCCT---------CCTGTCTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGCTGAAAGCGTAGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCGGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_lancea_L3 AACAGGTCTCCTCCTC-TCCTCCTCCTCCT---------CCTGTCTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTAGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCGGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_regalis_R10 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACAGGCATCGCAATCGTGAA-------GCTCGCCAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCTCGGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTATAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_regalis_R11R12 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCGGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTACGTTGAAAGCACCTATAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_regalis_R13a AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTTGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R13b AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATC-TCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCTAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTGAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R14aR16a AACAGGTCTCCTCCTCCTCCTCCTCCTCTT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCGTCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTTTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGCCTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R14b AACAGGTCTCCTCCTCCTCCTCCTCCTCTT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCGTCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTTTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGCCTCGTT----AGTTTGATCATACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTTGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R15 AACAGGTCTCCTCCTCCTCCTCCTCCTCTT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCGTCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTTTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGCCTCGTT----AGTTTGATCATACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTTGCAGAGCTGCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R16b AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGACCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R17R18 AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCTAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGTACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R1R2R3 AACAGGTCTCCTCCTC------------------------CTCTTTTGGGGTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATAGTCTTGGTCTCAATCGTGAGTATCTCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTGTAA-CAATCGCAGAGTTTGCGGATCTCACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCTTGTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_regalis_R4 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATAGTCTTGGTCTCAATCGTGAGTATCTCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTGTAA-CAATCGCAGAGTTTGCGGATCTCACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCTTGTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_regalis_R5R6R7R8R9 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCGAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTATAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCATAGATGGACGACTGGAGAAGT Plenasium_banksiifolium_A AACAGGTCTCCTCCTCCTTCTCCT---------------TCTCTTTTGGGCGTTTCAGCTTTCTTTGCCATGTATCCTCTTTTGGGTTTTTCAGCTTTCTTTGCTACGTATCCTCTGTCTCTGTGTCCGTCAGATCTGGTAGCAAGATCTGTCATATCCAATTGAGGCTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------TCTCGCCAGACGGTTCTAACAGGCCTTGTTCCTCAGATATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCAACATCGATTTTCTGCGTTTGTAGAAAGCGTGGAGCTCATTGAATCCACCAACCGGAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTGTCTCTGTGTCTC-ATTTCACGCT------------ATGCAGCAGGCA-TTTTTC-TGTTTC------------ACTGCGTTGAAAGCCCTTGTATGCAATCGCAGAGTTTGCGGATCTAACCTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCTTCTTGT-GTCAGCGATTCACGATTCAGCTTTGCTCGCTT-GATCTGTGATTCTGCT-GTGCGAAGTTCAGAGATGGACGACTGAAGAAGC Plenasium_banksiifolium_B AACAGGTCTCCTCCTCCTTCTCCT---------------TCTCTTTTGGGCGTTTCAGCTTTCTTTGCCATGTATCCTCTTTTGGGTTTTTCAGCTTTCTTTGCTACGTATCCTCTGTCTCTGTGTCCGTCAGATCTGGTAGCAAGATCTGTCATATCCAATTGAGGCTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------TCTCGCCAGACGGTTCTAACAGGCCTTGTTCCTCAGATATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCAACATCGATTTTCTGCGTTTGTAGAAAGCGTGGAGCTCGTTGAATCCACCAACCGGAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTGTCTCTGTGTCTC-ATTTCACGCT------------ATGCAGCAGGCA-TTTTTC-TGTTTC------------ACTGCGTTGAAAGCCCTTGTATGCAATCGCAGAGTTTGCGGATCTAACCTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCTTCTTGT-GTCAGCGATTCACGATTCAGCTTTGCTCGCTT-GATCTGTGATTCTGCT-GTGCGAAGTTCAGAGATGGACGACTGAAGAAGC ; END; [ The following blocks are output data for analysis step 27369 ] BEGIN TREES; TITLE Osmundaceae_L519; LINK TAXA = TaxaForAnalysisStep27369; TREE con_50_majrule = [&R] (Claytosmunda_claytoniana_CL2:0.011295,((Plenasium_banksiifolium_A:0.001755,Plenasium_banksiifolium_B:0.003314)1.00:0.058672,(((Osmunda_regalis_R1R2R3:0.003366,Osmunda_regalis_R4:0.001657)1.00:0.007169,(Osmunda_regalis_R10:0.005002,Osmunda_regalis_R5R6R7R8R9:0.003348,Osmunda_regalis_R11R12:0.004987):0.003286)0.81:0.011553,(((Osmunda_regalis_R14aR16a:0.001717,(Osmunda_regalis_R15:0.003367,Osmunda_regalis_R14b:0.001686)1.00:0.005002)1.00:0.008026,(Osmunda_regalis_R13a:0.003326,Osmunda_regalis_R16b:0.003348,(Osmunda_regalis_R13b:0.003352,Osmunda_regalis_R17R18:0.003381)1.00:0.005052)0.97:0.004178)0.98:0.005658,((Osmunda_lancea_L3:0.001646,Osmunda_lancea_L1bL2:0.003279)1.00:0.006997,(Osmunda_lancea_L1a:0.005181,(Osmunda_japonica_J3J4:0.001747,(Osmunda_japonica_J1b:0.001854,(Osmunda_japonica_J1aJ5J6J7J8:0.003362,Osmunda_japonica_J2a:0.001674,Osmunda_japonica_J2b:0.003305)0.99:0.005009)0.91:0.003412)0.88:0.003333)0.77:0.00327)1.00:0.015623)1.00:0.009617)1.00:0.029197)1.00:0.011295); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr126308] END; BEGIN TREES; TITLE Osmundaceae_L519; LINK TAXA = TaxaForAnalysisStep27369; TREE con_50_majrule = [&R] (Osmunda_regalis_R10:0.005002,Osmunda_regalis_R5R6R7R8R9:0.003348,Osmunda_regalis_R11R12:0.004987,((((((((Osmunda_japonica_J1aJ5J6J7J8:0.003362,Osmunda_japonica_J2a:0.001674,Osmunda_japonica_J2b:0.003305):0.005009,Osmunda_japonica_J1b:0.001854):0.003412,Osmunda_japonica_J3J4:0.001747):0.003333,Osmunda_lancea_L1a:0.005181):0.00327,(Osmunda_lancea_L3:0.001646,Osmunda_lancea_L1bL2:0.003279):0.006997):0.015623,(((Osmunda_regalis_R15:0.003367,Osmunda_regalis_R14b:0.001686):0.005002,Osmunda_regalis_R14aR16a:0.001717):0.008026,(Osmunda_regalis_R13a:0.003326,(Osmunda_regalis_R13b:0.003352,Osmunda_regalis_R17R18:0.003381):0.005052,Osmunda_regalis_R16b:0.003348):0.004178):0.005658):0.009617,((Plenasium_banksiifolium_A:0.001755,Plenasium_banksiifolium_B:0.003314):0.058672,Claytosmunda_claytoniana_CL2:0.02259):0.029197):0.011553,(Osmunda_regalis_R1R2R3:0.003366,Osmunda_regalis_R4:0.001657):0.007169):0.003286); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr126309] END;