#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 12, 2025; 11:14 GMT

TreeBASE (cc) 1994-2008

Study reference:
Stone R. 2005. Phylogeny of major lineages in Melastomataceae, subfamily Olisbeoideae:
utility of nuclear glyceraldehyde 3-phosphate dehydrogenase (GapC) gene sequences.
Systematic Botany, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1429]

[ The following blocks are input data for analysis step 2738 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2738;
        DIMENSIONS NTAX=19;
        TAXLABELS
            Crypteronia_paniculata_2.3
            Crypteronia_paniculata_2.5
            Heteropyxis_natalensis_1.10
            Heteropyxis_natalensis_1.2
            Heteropyxis_natalensis_1.4
            Heteropyxis_natalensis_1.6
            Memecylon_lateriflorum_1.6
            Memecylon_lateriflorum_1.8
            Pternandra_coerulescens_1.3
            Pternandra_coerulescens_1.4
            Pternandra_coerulescens_2.1
            Pternandra_multiflora_3.1
            Tibouchina_urvilleana_3.1
            Tibouchina_urvilleana_3.2
            Tibouchina_urvilleana_3.3
            Zea_mays_GapC1
            Zea_mays_GapC2
            Zea_mays_GapC3
            Zea_mays_GapC4
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1569]

	TITLE GapC_exon;
	LINK TAXA = TaxaForAnalysisStep2738;
	DIMENSIONS NCHAR=412;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                       10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  ]
[                                        .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .  ]
Crypteronia_paniculata_2.3      GATAGATTTGGAATTGTTGAGGGACTTATGACCACTGTTCACTCCATCACTGCTACCCAGAAAACTGTCGATGGTCCATCAATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATTCCCAGCAGCACTGGTGCTGCTAAGGCCGTTGGAAAGGTTCTGCCAGCTCTGAATGGAAAATTGACCGGAATGGCTTTCCGTGTCCCCACAGTGGATGTCTCCGTTGTTGATCTCACTGTCAGGCTCGAGAAGGAGGCCACATATGAGGAAATCAAAGCTGCCATCAAGGAGGAGTCTAAGGGCAAGTTGAAGGGAATTTTGGGCTACACTGAGGATGATGTGGTCTCCACTGACTTTGTCGGTGATAGCAGATCAAGCATATTTGATGCCAAGGCTGGAATTGCTT
Crypteronia_paniculata_2.5      GATAGATTTGGAATTGTTGAGGGACTTATGACCACTGTCCACTCTATCACTGCTACCCAGAAAACTGTCGATGGTCCATCAATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTTAACATCATTCCTAGCAGCACTGGTGCTGCTAAGGCCGTTGGGAAGGTTCTTCCAGCACTGAACGGAAAGTTGACTGGAATGTCTTTCCGTGTTCCTACAGTAGATGTCTCCGTTGTTGATCTCACGGTCAGACTTCAGAAGGAGGCTACATACGAGGAAATCAAAGGTGCCATCAAGGAGGAGTCTGAGGGCAAGTTGAAGGGTATTCTGGGCTACACCGAGGACGATGTGGTCTCCACTGACTTTGTTGGCGACAGCAGATCAAGCATATTTGATGCCAAGGCTGGAATTGCTT
Heteropyxis_natalensis_1.10     GATAGATTTGGAATTGTTGAGGGACTTATGACAACTGTTCACTCCATTACTGCCACACAGAAGACTGTTGATGGCCCATCGATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATCCCCAGCAGCACTGGTGCTGCAAAGGCCGTGGGAAAGGTGCTACCGGCTCTCAATGGTAAACTCACTGGAATGTCTTTCCGTGTGCCTACTGTTGATGTGTCTGTTGTGGATCTCACCGTCAGGCTTGAGAAGGAGGCAACTTATGAGGAGATCAAAGCTGTCATTAAGGAGCAGTCTGAGGGCAAACTGAAAGGGATTTTAGGTTACACTGAAGACGATGTGGTCTCCACAGACTTTGTTGGTGATAACAGGTCAAGCATTTTCGATGCCAAGGCTGGAATTGCTT
Heteropyxis_natalensis_1.2      GATAGATTTGGAATTGTTGAGGGTCTTATGACCACTGTCCATTCCATTACTGCCACACAGAAGACTGTTGATGGACCATCAATGAAGGACTGGAGAGGTGGCAGAGCTGCTTCTTTCAACATCATCCCAAGCAGCACCGGTGCTGCCAAGGCCGTAGGGAAAGTGCTTCCAGCACTAAATGGCAAGTTGACTGGAATGGCTTTCCGTGTGCCCACTGTTGATGTCTCAGTGGTTGACCTCACTGTGAGACTCGAGAAGGCTGCTACTTATGACGAGATCAAGGCTGCAATTAAGGAGGAATCTGAAGGGAATATGAAGGGCATTCTTGGTTTCACTGATGATGATGTGGTATCAACTGACTTTGTTGGTGACAACAGGTCAAGTATCTTTGATGCCAAGGCTGGAATTGCTT
Heteropyxis_natalensis_1.4      GATAGATTTGGAATTGTTGAGGGACTTATGACAACTGTTCACTCCATTACTGCCACACAGAAGACTGTTGATGGCCCATCGATGAAGGATTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATCCCCAGCAGCACTGGTGCTGCAAAGGCCGTGGGAAAGGTGCTACCGGCTCTCAATGGTAAACTCACTGGAATGTCTTTCCGTGTGCCTACTGTTGATGTGTCTGTTGTGGATCTCACCGTCAGGCTTGAGAAGGAGGCAACTTACGAGGAGATCAAAGCTGTCATTAAGGAGCAGTCTGAGGGCAAACTGAAAGGGATTTTAGGTTACACTGAAGACGATGTGGTCTCCACAGACTTTGTTGGTGATAACAGGTCAAGCATTTTCGATGCCAAGGCTGGAATTGCTT
Heteropyxis_natalensis_1.6      GATAGATTTGGAATTGTTGAGGGACTTATGACAACTGTTCACTCCATTACTGCCACACAGAAGACTGTTGATGGCCCATCGATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATCCCCAGCAGCACTGGTGCTGCAAAGGCCGTGGGAAAGGTGCTACCGGCTCTCAATGGTAAACTCACTGGAATGTCTTTCCGTGTGCCTACTGTTGATGTGTCTGTTGTGGATCTCACCGTCAGGCTTGAGAAGGAGGCAACTTACGAGGAGATCAAAGCTGTCATTAAGGAGCAGTCTGAGGGCAAACTGAAAGGGATTTTAGGTTACACTGAAGACGATGTGGTCTCCACAGACTTTGTTGGTGATAACAGGTCAAGCATTTTCGATGCCAAGGCTG-AATTGCTT
Memecylon_lateriflorum_1.6      GATAGATTTGGAATTGTTGAGGGTCTCATGACCACTGTACACTCTATCACTGCCACCCAGAAAACCGTCGATGGCCCATCAATGAAGGATTGGAGAGGTGGAAGGGCTGCCTCTTTCAACATCATTCCCAGCAGCACTGGCGCTGCTAAGGCTGTTGGAAAAGTTCTGCCATCATTGAACGGAAAATTGACTGGAATGGCCTTCCGAGTCCCAACTGTCGATGTATCTGTTGTGGATTTGACCGTAAGACTTGAGAAGGAGGCTACCTATGATGATATCAAGCATGCCATGAAGGAGGCATCTGAGGGCAAATTGAAGGGAATTGTGGGTTATACTGAGGATGATGTGGTCTCCACTGACTTTATTGGTGACAGCAGGTCGAGCATCTTTGATGCCAAGGCTGGAATTGCTT
Memecylon_lateriflorum_1.8      GATAGATTTGGAATTGTTGAGGGTCTCATGACCACTGTACACTCTATCACTGCCACCCAGAAAACCGTCGATGGCCCATCAATGAAGGATTGGAGAGGTGGAAGGGCTGCCTCTTTCAACATCATTCCTAGCAGCACTGGCGCTGCTAAGGCTGTTGGAAAAGTTCTGCCATCATTGAACGGAAAATTGACTGGAATGGCCTTCCGAGTCCCAACTGTCGATGTATCTGTTGTGGATTTGACCGTAAGACTTGAGAAGGAGGCTACCTATGATGATATCAAGCATGCCATGAAGGAGGCATCTGAGGGCAAATTGAAGGGAATTGTGGGTTATACTGAGGATGATGTGGTCTCCACTGACTTTATTGGTGACAGCAGGTCGAGCATCTTTGATGCCAAGGCTGGAATTGCTT
Pternandra_coerulescens_1.3     GATAGATTTGGAATTGTTGAGGGTCTCATGACAACTGTCCACTCCATTACTGCCACCCAGAAAACTGTTGATGGCCCGTCAATGAAGGACTGGAGAGGTGGAAGAGCGGCCTCCTTCAACATCATTCCCAGCAGCACTGGCGCTGCGAAGGCCGTCGGAAAAGTTCTGCCAGTATTGAACGGAAAATTGACTGGAATGGCCTTCCGTGTCCCAACTGTAGATGTCTCTGTTGTTGATCTTACTGTCAGACTTCAGAAGGAGGCTACTTATGATGACATCAAGGCTGCCATCAAGAAGGCATCCGAAGGCAAGTTAAAGGGAATTTTGGGCTACACTGAAGATGATGTGGTCTCCACTGACTTTATTGGTGACAGCAGATCAAGCATATTCGATGCCAAGGCTGGAATTGCTT
Pternandra_coerulescens_1.4     GATAGATTTGGAATTGTTGAGGGTCTCATGACAACTGTCCACTCCATTACTGCCACCCAGAAAACTGTTGATGGCCCGTCAATGAAGGACTGGAGAGGTGGAAGAGCGGCCTCCTTCAACATCATTCCCAGCAGCACTGGCGCTGCGAAGGCCGTCGGAAAAGTTCTGCCAGTATTGAACGGAAAATTGACTGGAATGGCCTTCCGTGTCCCAACTGTAGATGTCTCTGTTGTTGATCTTACTGTCAGACTTCAGAAGGAGGCTACTTATGATGACATCAAGGCTGCCATCAAGAAGGCATCCGAAGGCAAGTTGAAGGGAATTTTGGGCTACACTGAAGATGATGTGGTCTCCACTGACTTTATTGGTGACAGCAGATCAAGCATATTCGATGCCAAGGCTGGAATTGCTT
Pternandra_coerulescens_2.1     GATAGATTTGGAATTGTTGAGGGTCTCATGACCACAGTACATTCCATAACCGCCACCCAAAAGACTGTTGATGGGCCATCCATGAAGGACTGGAGAGGGGGTAGAGCTGCCTCTTTTAACATAATTCCAAGCAGCACAGGAGCTGCTAAGGCTGTTGGAAAAGTGCTTCCAGCGCTAAATGGGAAACTGACTGGAATGGCTTTCCGTGTGCCTACTGTGGATGTCTCGGTGGTCGACCTAACTGTGAGACTTGAGAAGCCAGCTTCCTATGATGAGATCAAGGCCGCCATCAAGGAGGAATCTGAGAGCAATATGAAAGGCATTCTGGGATACACAGAGGATGATGTTGTATCCACGGACTTTCTAGGTGATAGCAGATCAAGCATCTTTGACGCCAAGGCTGGAATTGCTT
Pternandra_multiflora_3.1       GATAGATTTGGAATTGTTGAGGGTCTCATGACAACTGTCCACTCCATTACTGCCACCCAGAAAACTGTTGATGGCCCGTCAATGAAGGACTGGAGAGGTGGAAGAGCGGCCTCCTTCAACATCATTCCTAGCAGCACTGGTGCTGCGAAGGCCGTTGGAAAAGTTCTGCCAGTATTGAACGGAAAATTGACTGGAATGGCCTTCCGTGTCCCAACCGTAGATGTCTCTGTTGTTGATCTTACTGTCAGACTTGAGAAGGAGGCTACTTATGATGACATCAAGGCTGCCATCAAGGAGGCATCCCAGGGCAAGTTGAAGGGAATTTTGGGCTACACTGAAGATGATGTGGTCTCCACTGACTTTGTTGGTGACAGCAGATCAAGCATATTCGATGCCAAGGCTGGAATTGCTT
Tibouchina_urvilleana_3.1       GATAGATTTGGAATTGTTGAGGGGCTAATGACCACAGTGCATTCCATGACTGCCACCCAGAAGACTGTCGACGGACCATCCATGAAGGACTGGAGGGGAGGCAGAGCCGCTTCTTTTAACATAATCCCGAGCAGCACGGGGGCGGCGAAGGCAGTTGGAAAAGTGCTCCCGTCCCTGAACGGGAAGCTGACTGGAATGGCCTTCCGTGTGCCCACCGTGGACGTCTCTGTGGTCGACCTAACCGTAAGACTGGAAAAGGAAGCATCTTATGACGAGATCAAGGCTGCCATCAAGGAGGAATCCGAGGGGAAAATGAAGGGCATCCTCGGGTACACGGAGGACGACGTAGTCTCCACCGACTTCATGGGAGACAATAGGTCAAGCATCTTCGACGCCAAGGCTGGAATTGCTT
Tibouchina_urvilleana_3.2       GATAGATTTGGAATTGTTGAGGGGCTAATGACCACAGTGCATTCCATGACAGCCACCCAAAAGACTGTCGACGGACCATCCATGAAGGATTGGAGGGGAGGCAGAGCCGCTTCTTTTAACATAATCCCGAGCAGCACGGGGGCGGCAAAGGCAGTTGGAAAAGTGCTCCCGTCCCTGAACGGGAAGCTGACTGGAATGGCCTTCCGTGTGCCCACCGTGGACGTCTCTGTGGTCGACCTAACCGTAAGACTGGAAAAGGAAGCATCTTATGACGAGATCAAGGCCGCCATCAAGGAGGAATCCGAGGGGAAAATGAAGGGCATCCTCGGGTACACGGAGGACGACGTAGTCTCCACCGACTTCATGGGAGACAACAGGTCAAGCATCTTCGACGCCAAGGCTGGAATTGCTT
Tibouchina_urvilleana_3.3       GATAGATTTGGAATTGTTGAGGGGCTAATGACCACAGTGCATTCCATGACAGCCACCCAAAAGACTGTCGACGGACCATCCATGAAGGATTGGAGGGGAGGCAGAGCCGCTTCTTTTAACATAATCCCGAGCAGCACGGGGGCGGCAAAGGCAGTTGGAAAAGTGCTCC-GTCCCTGAACGGGAAGCTGACTGGAATGGCCTTCCGTGTGCCCACCGTGGACGTCTCTGTGGTCGACCTAACCGTAAGACTGGAAAAGGAAGCATCTTATGACGAGATCAAGGCTGCCATCAAGGAGGAATCCGAGGGGAAAATGAAGGGCATCCTCGGGTACACGGAGGACGACGTAGTCTCCACCGACTTCATGGGAGACAATAGGTCAAGCATCTTCGACGCCAAGGCTGGAATTGCTT
Zea_mays_GapC1                  GACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTGCCACACAGAAAACTGTTGACGGACCCTCAGCCAAGGACTGGAGAGGTGGCAGGGCTGCCAGCTTTAACATCATTCCTAGCAGCACCGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCCTGATCTGAATGGCAAGCTCACTGGTATGTCCTTCCGTGTTCCTACTGTGGATGTCTCGGTTGTTGACCTCACCGTCAGAATCGAGAAGGGGGCCTCCTATGAGGATATCAAGAAAGCTATTAAGGCTGCTTCCGAGGGTCCACTCAAGGGTATCATGGGTTATGTGGAAGAGGATCTGGTTTCTACCGACTTCCTTGGTGACAGCAGGTCGAGCATCTTCGACGCCAAGGCCGGGATCGCTC
Zea_mays_GapC2                  GACAACTTTGGCATTATTGAGGGCTTGATGACAACTGTTCATGCCATCACTGCCACCCAGAAGACTGTTGATGGACCCTCAGCCAAGGACTGGAGAGGTGGCAGGGCTGCCAGCTTTAACATCATTCCCAGCAGCACCGGTGCTGCCAAGGCTGTCGGTAAGGTTCTTCCTGAATTGAATGGCAAGCTCACTGGCATGTCCTTCCGGGTTCCCACCGTGGATGTGTCAGTTGTTGACCTCACTGTCAGAATCGAGAAGGGGGCCTCTTACGAGGAAATCAAGAAAGCTATTAAGGCTGCTTCTGAGGGCCCACTCAAGGGTATTATGGGCTACGTGGAGGAGGATCTGGTTTCCACCGACTTCACCGGTGACAGCAGGTCGAGCATCTTCGACGCCAAGGCCGGGATTGCCC
Zea_mays_GapC3                  GACAAGTTCGGTATTGTTGAGGGTCTGATGACCACTGTTCATGCCATCACTGCTACCCAGAAGACTGTTGATGGGCCCTCATCTAAGGACTGGAGGGGTGGAAGGGCTGCTAGTTTCAACATCATTCCCAGCAGCACTGGAGCTGCTAAGGCTGTTGGCAAAGTGCTTCCTGTCCTCAATGGAAAGTTGACTGGAATGTCTTTCCGTGTCCCAACTGTCGATGTTTCTGTTGTTGATCTAACTGTTAGGCTTGAGAAGTCTGCCACCTATGATGAGATCAAGGCTGCGGTCAAGGCCGAGGCAGAGGGTAGCCTCAAGGGCATTCTGGGTTATGTCGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGGTCTAGCATCTTTGATGCGAAGGCTGGCATTGCCT
Zea_mays_GapC4                  GACAAGTTCGGTATCGTTGAGGGTCTGATGACCACTGTCCATGCCATCACTGCTACCCAGAAGACTGTTGATGGGCCCTCATCTAAGGACTGGAGGGGTGGAAGGGCTGCTAGTTTCAACATCATTCCCAGCAGCACTGGAGCTGCTAAGGCTGTTGGCAAAGTGCTTCCTGTCCTTAACGGAAAGTTGACTGGAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = GapC_exon) = 
		N: 4-412,
		1: 1-3\3,
		2: 2-4\3,
		3: 3-5\3;
CODONPOSSET  CodonPositions (CHARACTERS = GapC_exon) = 
		N: 4-412,
		1: 1-3\3,
		2: 2-4\3,
		3: 3-5\3;
END;
[ The following blocks are output data for analysis step 2738 ]
BEGIN TREES;
      TITLE Tb7512;
      LINK TAXA = TaxaForAnalysisStep2738;
      TREE Fig._2A = [&R] (Zea_mays_GapC1,(Zea_mays_GapC2,((Zea_mays_GapC3,Zea_mays_GapC4),((Heteropyxis_natalensis_1.2,(Pternandra_coerulescens_2.1,(Tibouchina_urvilleana_3.1,(Tibouchina_urvilleana_3.2,Tibouchina_urvilleana_3.3))))Myrtales_GapC_short_paralog_subclade,(((Heteropyxis_natalensis_1.4,Heteropyxis_natalensis_1.6),Heteropyxis_natalensis_1.10),((Crypteronia_paniculata_2.3,Crypteronia_paniculata_2.5),(((Pternandra_coerulescens_1.3,Pternandra_coerulescens_1.4),Pternandra_multiflora_3.1),(Memecylon_lateriflorum_1.6,Memecylon_lateriflorum_1.8))))Myrtales_GapC_long_paralog_subclade)Myrtales)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr247]


END;
BEGIN TREES;
      TITLE Tb7512;
      LINK TAXA = TaxaForAnalysisStep2738;
      TREE Fig._2B = [&R] (Zea_mays_GapC1,(Zea_mays_GapC2,((Zea_mays_GapC3,Zea_mays_GapC4),((Heteropyxis_natalensis_1.2,(Pternandra_coerulescens_2.1,(Tibouchina_urvilleana_3.1,(Tibouchina_urvilleana_3.2,Tibouchina_urvilleana_3.3))))Myrtales_GapC_short_paralog_subclade,(((Heteropyxis_natalensis_1.4,Heteropyxis_natalensis_1.6),Heteropyxis_natalensis_1.10),(Crypteronia_paniculata_2.3,Crypteronia_paniculata_2.5),(((Pternandra_coerulescens_1.3,Pternandra_coerulescens_1.4),Pternandra_multiflora_3.1),(Memecylon_lateriflorum_1.6,Memecylon_lateriflorum_1.8)))Myrtales_GapC_long_paralog_subclade)Myrtales)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr246]


END;