#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 01, 2025; 7:57 GMT TreeBASE (cc) 1994-2008 Study reference: Miller E., Barragan V.A., Chiriboga J., Weddell C., Luna L., Jiménez D.J., Aleman J., Mihaljevic J.R., Olivas S., Marks J., Izurieta R., Nieto N., Keim P., Trueba G., Caporaso J., & Pearson T. 2020. Leptospira in river and soil in a highly endemic area of Ecuador. BMC Microbiology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S27108] [ The following blocks are input data for analysis step 27517 ] BEGIN TAXA; TITLE TaxaForAnalysisStep27517; DIMENSIONS NTAX=41; TAXLABELS 'Leptonema illini DB52_AY996803_16S' 'Leptospira alexanderi Manzhuang_A23_AY996803_16S.' 'Leptospira bandrabouensis CES_MN062727_16S' 'Leptospira biflexa Patoc_Patoc_1_Paris_CP000786' 'Leptospira borgpetersenii Hardjo.bovis_L550_CP000348' 'Leptospira bourretii CES_MN061027_16S' 'Leptospira bouyouniensis CES_MN061028_16S' 'Leptospira brenneri CES_MK791639_16S' 'Leptospira congkakensis CES_MN061030_16S' 'Leptospira ellinghausenii CES_MN061031_16S' 'Leptospira fainei Hurstbridge_str._BUT_6_NR_043049' 'Leptospira harrisiae CES_MK791640_16S' 'Leptospira idonii Eri.1_NR_114336' 'Leptospira ilyithenensis CES_MN086350_16S' 'Leptospira inadai Lyme_10_NR_115296' 'Leptospira interrogans Lai_str._56601_AE010300' 'Leptospira jelokensis CES_MN062728_16S' 'Leptospira kanakyensis CES_MN061032_16S' 'Leptospira kemamanensis CES_MN062726_16S' 'Leptospira kirschneri CES_MK72612316S' 'Leptospira kirschneri Mozdok_3759_KP125531_16S' 'Leptospira kmetyi CES_MK719980_16S' 'Leptospira kobayashii CES_MN061033_16S' 'Leptospira levettii CES_MK791641_16S' 'Leptospira licerasiae Varillal_EF612287_MMD835_16S' 'Leptospira macculloughii CES_MK791638_16S' 'Leptospira meyeri CES_MN047229_16S' 'Leptospira montravelensis CES_MN062731_16S' 'Leptospira mtsangambouensis CES_MN062733_16S' 'Leptospira noguchii CES_MK726126_16S' 'Leptospira noumeaensis CES_MN062729_16S' 'Leptospira ognonensis CES_MN082575_16S' 'Leptospira perdikensis CES_MN086353_16S' 'Leptospira ryugenii CES_MN086356_16S' 'Leptospira santarosai Georgia_LT_117_AY996805_16S' 'Leptospira terpstrae CES_MN047230_16S' 'Leptospira vanthielii Holland_WaZ_Holland_NR_115297' 'Leptospira weilii Sarmin_U12673' 'Leptospira wolbachii CES_MN047227_16S' 'Leptospira wolffii Khorat_Khorat.H2_NR_044042' 'Leptospira yanagawae CES_MN047228_16S' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58627] TITLE Leptospira_16S; LINK TAXA = TaxaForAnalysisStep27517; DIMENSIONS NCHAR=229; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ] [ . . . . . . . . . . . . . . . . . . . . . . ] 'Leptonema illini DB52_AY996803_16S' CGGCGCGTCTTAAACATGCAAGTCGAGCGG--CAGCACTTCGGGTGGCGAGCGGCGAACGGGTGAGTAACACGTAGGTAATTTGCCCACGGATGGGGGATAACCTTTCGAAAGGAAGGCTAATACCGCATAACACCATGG-TTACCA--------CGGTAATTAT-GGTCAAAGCAGCAATGC-GTCTGTGGAGAAGCCTGCGTCCGATTAGGTAGTTGGTGAGGTAA- 'Leptospira alexanderi Manzhuang_A23_AY996803_16S.' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TTAAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATA-------GTCCCGAGAGGTCATATGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGCCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira bandrabouensis CES_MN062727_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira biflexa Patoc_Patoc_1_Paris_CP000786' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGTAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira borgpetersenii Hardjo.bovis_L550_CP000348' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATA-------GTCCCGAGAGGTCATAGGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGCCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira bourretii CES_MN061027_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAAGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira bouyouniensis CES_MN061028_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira brenneri CES_MK791639_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira congkakensis CES_MN061030_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ellinghausenii CES_MN061031_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira fainei Hurstbridge_str._BUT_6_NR_043049' CGGCGCGTCTTAAACATGCAAGTCGAGCGGGGTAGCAATAC------CTAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATA-------GTCCTGTTGGATCACAAGATTTGATAGGTAAAGATTTATTGC---TTGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira harrisiae CES_MK791640_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira idonii Eri.1_NR_114336' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTTTAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCAGCAAAG----GCTGGATT---GGTTAAAGCAGCAATGC-GCTTAGAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ilyithenensis CES_MN086350_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-CTAGCAATAG------C-AGTGGCGAACGGGTGAGTAATACATGGATAATCTACCTAAAAGTTGGGGATAACTCAGAGAAATTTGGGCTAATACCG---AATGTGACGG-TTTGACATAG----GTCAGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTAGGGTAA- 'Leptospira inadai Lyme_10_NR_115296' CGGCGCGTCTTAAACATGCAAGTCGAGCGGGGTAGCAATAC------CTAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATA-------GTCCTACTGGATCACAGGATCTGATAGGTAAAGATTTATTGC---TTGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira interrogans Lai_str._56601_AE010300' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCTGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATG-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira jelokensis CES_MN062728_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira kanakyensis CES_MN061032_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira kemamanensis CES_MN062726_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira kirschneri CES_MK72612316S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATG-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira kirschneri Mozdok_3759_KP125531_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC------TCAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATG-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira kmetyi CES_MK719980_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTTCGAAAGGAAAGCTAATACTG---GATA-------GTCCCGAGAGATCACAAGGTTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira kobayashii CES_MN061033_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-CTAGCAATAG------C-AGTGGCGAACGGGTGAGTAATACATGGATAATCTACCTAAAAGTTGGGGATAACTCAGAGAAATTTGGGCTAATACCG---AATGTGACGG-TTTGACATAG----GTCAGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTAGGGTAA- 'Leptospira levettii CES_MK791641_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira licerasiae Varillal_EF612287_MMD835_16S' ------------------CAAGTCGAGCGGAGTAGCAATAC-----TT-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAATCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATAGTTCTA-TT--GGATCA----CAGGATTT---GATAGATAAAGGTTTACTGTTCGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira macculloughii CES_MK791638_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira meyeri CES_MN047229_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira montravelensis CES_MN062731_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira mtsangambouensis CES_MN062733_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira noguchii CES_MK726126_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTTCGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATA-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTCATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira noumeaensis CES_MN062729_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ognonensis CES_MN082575_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAATCTACCTAAAAGTTGGGGATAACTCAGAGAAATTTGGGATAATACCG---AATGTGACGG-TTCAGCACAA----GCTGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira perdikensis CES_MN086353_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ryugenii CES_MN086356_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAAAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira santarosai Georgia_LT_117_AY996805_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTTCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATAGTCCCGATAGATCATAG----GATGTATC---GGGTAAAGATTCATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira terpstrae CES_MN047230_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAAAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira vanthielii Holland_WaZ_Holland_NR_115297' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira weilii Sarmin_U12673' CGGCGCGTCTTAAACATGCAAGTCAAGCGGGATAGCAATAT-----CC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATA-------GTCCCGAGAGGTCATATGATTTTTCGGGTAAAGATTTATTGC---TCGGAGCTGAGCCCGCGCCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira wolbachii CES_MN047227_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira wolffii Khorat_Khorat.H2_NR_044042' CGGCGCGTCTTAAACATGCAAGTCGAGCGGAGTAGCAATAC-----TT-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAATCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATAGTTCTA-TT--GGATCA----CAGGATTT---GATAGATAAAGGTTTACTGTTCGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira yanagawae CES_MN047228_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- ; END; [ The following blocks are output data for analysis step 27517 ] BEGIN TREES; TITLE Leptospira; LINK TAXA = TaxaForAnalysisStep27517; TREE Imported_tree_1 = [&R] ('Leptonema illini DB52_AY996803_16S':0.147067,((('Leptospira wolffii Khorat_Khorat.H2_NR_044042':0.0,'Leptospira licerasiae Varillal_EF612287_MMD835_16S':0.0):0.103429,(('Leptospira inadai Lyme_10_NR_115296':0.021674,'Leptospira fainei Hurstbridge_str._BUT_6_NR_043049':0.0):0.041266,('Leptospira kmetyi CES_MK719980_16S':0.010524,(('Leptospira noguchii CES_MK726126_16S':0.010705,('Leptospira kirschneri Mozdok_3759_KP125531_16S':0.005916,('Leptospira kirschneri CES_MK72612316S':0.0,'Leptospira interrogans Lai_str._56601_AE010300':0.005326):0.0):0.005841):0.0,('Leptospira santarosai Georgia_LT_117_AY996805_16S':0.090682,('Leptospira alexanderi Manzhuang_A23_AY996803_16S.':0.006241,('Leptospira weilii Sarmin_U12673':0.027438,'Leptospira borgpetersenii Hardjo.bovis_L550_CP000348':0.005348):0.0):0.006123):0.019609):0.01158):0.042011):0.036845):0.109163,(('Leptospira idonii Eri.1_NR_114336':0.029173,('Leptospira ognonensis CES_MN082575_16S':0.015469,('Leptospira kobayashii CES_MN061033_16S':0.0,'Leptospira ilyithenensis CES_MN086350_16S':0.0):0.054815):0.020384):0.04223,(('Leptospira perdikensis CES_MN086353_16S':0.0,('Leptospira harrisiae CES_MK791640_16S':0.0,'Leptospira brenneri CES_MK791639_16S':0.0):0.0):0.0,('Leptospira vanthielii Holland_WaZ_Holland_NR_115297':0.0,(('Leptospira terpstrae CES_MN047230_16S':0.0,'Leptospira ryugenii CES_MN086356_16S':0.0):0.005377,('Leptospira bourretii CES_MN061027_16S':0.005377,(('Leptospira bouyouniensis CES_MN061028_16S':0.0,'Leptospira biflexa Patoc_Patoc_1_Paris_CP000786':0.005379):0.0,('Leptospira yanagawae CES_MN047228_16S':0.0,('Leptospira wolbachii CES_MN047227_16S':0.0,('Leptospira noumeaensis CES_MN062729_16S':0.0,('Leptospira mtsangambouensis CES_MN062733_16S':0.0,('Leptospira montravelensis CES_MN062731_16S':0.0,('Leptospira meyeri CES_MN047229_16S':0.0,('Leptospira macculloughii CES_MK791638_16S':0.0,('Leptospira levettii CES_MK791641_16S':0.0,('Leptospira kemamanensis CES_MN062726_16S':0.0,('Leptospira kanakyensis CES_MN061032_16S':0.0,('Leptospira jelokensis CES_MN062728_16S':0.0,('Leptospira ellinghausenii CES_MN061031_16S':0.0,('Leptospira congkakensis CES_MN061030_16S':0.0,'Leptospira bandrabouensis CES_MN062727_16S':0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.005376):0.0):0.0):0.354179):0.147067); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr129543] END;