#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 8:18 GMT TreeBASE (cc) 1994-2008 Study reference: Feng Y., Oh S., & Manos P. 2005. Phylogeny and Historical Biogeography of the Genus Platanus as Inferred From Nuclear and Chloroplast DNA. Systematic Botany, 30. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1434] [ The following blocks are input data for analysis step 2753 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2753; DIMENSIONS NTAX=21; TAXLABELS Platanus_kerrii Platanus_mexicana_var._mexicana_CH1 Platanus_mexicana_var._mexicana_CH2 Platanus_mexicana_var._mexicana_VE1 Platanus_mexicana_var._mexicana_VE2 Platanus_mexicana_var._mexicana_VE4 Platanus_occidentalis_var._occidentalis_IL Platanus_occidentalis_var._occidentalis_MO Platanus_occidentalis_var._occidentalis_NC1 Platanus_occidentalis_var._occidentalis_NC2 Platanus_occidentalis_var._occidentalis_NC3 Platanus_occidentalis_var._occidentalis_NJ Platanus_orientalis_GR1 Platanus_orientalis_GR3 Platanus_orientalis_TU Platanus_racemosa_var._racemosa_CA1 Platanus_racemosa_var._racemosa_CA2 Platanus_racemosa_var._wrightii_AZ1 Platanus_racemosa_var._wrightii_AZ2 Platanus_racemosa_var._wrightii_AZ3 Platanus_rzedowskii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1580] TITLE LEAFY; LINK TAXA = TaxaForAnalysisStep2753; DIMENSIONS NCHAR=956; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Platanus_kerrii CGATCCTTTTCCAGCCCTAGCATTCATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG-AATGAAATCATTTCATTTGAGTTTCCCAAGGATTTTGT{AC}ATTACAATGGGATGGTTTATAATCAATTCATTCAGATTTGTAGCCATTTGTGCTTGTTAACATAAGTCATTTCATGTCATAGAAAAACCTAAGAAGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATCTGAATGAG{CT}TCATTTTGAAACCATCCTCTCATGGCCATAAATATTTTGAGAAACTCAAATGAAATTATTACATTAC{AC}GGTGGCTGCCAAACGCAGCCT-AAAAACAAAATGA---AAGTTGAAT-CAGGCGAGTGAAAGGAGTCCGGGACTACC---------CCAAAATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAAACTTTTAAGTAAAACTTTTCTTCCTTCTTTCAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGTTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGC----GAGAGAGAGAGAGAGAGA----------------------------------CTGAGGACTTTGAGGTTGTCTTCGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_mexicana_var._mexicana_CH1 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCCAGCTTGGCTAAGCTTGGACCACGAG{AT}AAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGGGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAGCTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAA------GAGAGAGAGAGAGAGAGAGAGAGA------------------------------GAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_mexicana_var._mexicana_CH2 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCCAGCTTGGCTAAGCTTGGACCACGAGTAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGGGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAGCTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGACATTCAAAACTTATGAGAAGGCATGCACCAAAGAA------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--GAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_mexicana_var._mexicana_VE1 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTGCAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCTTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAAATTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_mexicana_var._mexicana_VE2 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTGCAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGT{CG}TAATTAATTTTTATGTAAAACCTTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAAATTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGA{CG}AGAGA----------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_mexicana_var._mexicana_VE4 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTGCAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCTTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAAATTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_occidentalis_var._occidentalis_IL CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTA{CT}GTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_occidentalis_var._occidentalis_MO CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGTGT--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_occidentalis_var._occidentalis_NC1 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTATGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_occidentalis_var._occidentalis_NC2 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAG{GT}TCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_occidentalis_var._occidentalis_NC3 CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTA{CT}GTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_occidentalis_var._occidentalis_NJ CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAG{CT}TCTGCTTGTTAAGACCCCTAGGTTG{CG}T{AC}TGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGCTTGGACCACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTA{CT}GTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACG{AG}AACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGTCTAATTAAATTTTATGTAAAACCGTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAACTTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG Platanus_orientalis_GR1 CGATCCTTTTGCAGCCCTAGCATTCATGTGACAAGCCTGAACTAGGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAACTCATATTCACTTT-GAGTTGGGACTAAT-TTTTTCCTTGCCAACTATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTAGTTACAATGGGATAGTTTATAATCAACTCATTCAGATT---------------------ACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAATTAAATTATTACATTACAGGTGGCTGCG-------------------------TTTAAGTTGAATACTGGTGAATGGA----GTCTGGGACTATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCAAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------AAAACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTTTTTTGGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATGATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_orientalis_GR3 CGATCCTTTTGCAGCCCTAGCATTCATGTGACAAGCCTGAACTAGGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAACTCATATTCACTTT-GAGTTGGGACTAAT-TTTTTCCTTGCCAACTATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTAGTTACAATGGGATAGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATGACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAATTAAATTATTACATTACAGGTGGCTGCG-------------------------TTTAAGTTGAATACTGGTGAATGGA----GTCTGGGAC{AT}ATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCAAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------AAAACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTTTTTTGGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATGATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_orientalis_TU CGATCCTTTTGCAGCCCTAGCATTCATGTGACAAGCCTGAACTAGGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAACTCATATTCACTTT-GAGTTGGGACTAAT-TTTTTCCTTGCCAACTATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTAGTTACAATGGGATAGTTTATAATCAACTCATTCAGATT---------------------ACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAATTAAATTATTACATTACAGGTGGCTGCG-------------------------TTTAAGTTGAATACTGGTGAATGGA----GTCTGGGACTATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCAAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------AAAACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTTTTTTGGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATGATATGC{CG}TAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_racemosa_var._racemosa_CA1 CGATCCTTTTGCAGCGCTAGCATTCATGTGACAAGCCTGAACTAAGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAACTCATATTCACTTT-GAGTTGGGACTAAT-TTTTTCCGTGCCAAAGATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTTGTTACAATGGGATAGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTTAAATTAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACTGGCGAATGGA----GTCTGGGCCTATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCTAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------AAAACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_racemosa_var._racemosa_CA2 CGATCCTTTTGCAGCGCTAGCATTCATGTGACAAGCCTGAACTAAGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAACTCATATTCACTTT-GAGTTGGGACTAAT-TTTTTCCGTGCCAAAGATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTTGTTACAATGGGATAGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTTAAATTAAATTATTACATTACAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACTGGCGAATGGA----GTCTGGGCCTATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCTAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------AAAACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_racemosa_var._wrightii_AZ1 CGATCCTTTTGCAGCGCTAGCATTCATGTGACAAGCCTGAACTAAGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAAGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAACTCATATTCACTTT-GAGTTGGGACTAAT-TTTTTCCTTGCCAAAGATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTAGTTACAATGGGATAGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAATTAAATTATTACATTACAGGTGGCTCCCAAACGCAGCCTAAAAAACAAA-TGA---AAGTTGAATACTGGCGAATGGA----GTCTGGGCCTATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCTAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------AAAACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_racemosa_var._wrightii_AZ2 CGATCCTTTTGCAGCGCTAGCATTCATGTGACAAGCCTGAACTAAGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAAGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAACTCATATTCACTTT-GAGTTGGGACTAAT-TTTTTCCTTGCCAAAGATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTAGTTACAATGGGATAGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAATTAAATTATTACATTACAGGTGGCTCCCAAACGCAGCATAAAAAACAAAATGA---AAGTTGAATACTGGCGAATGGA----GTCTGGGCCTATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCTAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------A{AG}AACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_racemosa_var._wrightii_AZ3 CGATCCTTTTGCAGCGCTAGCATTCATGTGACAAGCCTGAACTAAGTTGGGTAAAGCTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGAC------------------------GAGAAAGTCCAGCTTTGCGGGAGCTCATATTCCCTTT-GAGTTGGGACTAAT-TTTTTCCGTGCCAAAGATTAAGGCTGCGTTTGGCAGCCACCTGTAATGAAATCATTTCATTTGAGTTTCCCAATGATTTTGTAGTTACAATGGGATAGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAAAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGAAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAATTAAATTATTACATTACAGGTG{AG}CTCCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACTGGCGAATGGA----GTCTGGGCCTATCTTATTTCTGCCAAAATTTTAGATGAATCTAATTAAATTTTGTGTAAGACCGTATTTAGTAAGCTTTTAAGTAAAACTTTTCTAGCTTCTT-CAATCAACTTTGGCATTTCTCTCTCTAAAA--GAGCTTTTAAGTAAAACTGCAATCTC--------------AAAACTTATGAGAAGGCATGCACCAAAGAACT----GAGAGAGAGAGA----------------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTATATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTACAG Platanus_rzedowskii CGATCCTTCTGCAGCTCTAG------------------------AGTTGGGTAAAGTTCTGCTTGTTAAGACCCCTAGGTTGGTATGTGCTTGGCCCAAATTAAGACCTAGCTTGGCTAAGATTGGACTACGAGAAAGTCTAGCTTTGCGGGAACTCATATTCACTTTTGAGTTGGGAGTAATCTTTTTCCTTGCCAAAGATTAAGGCTACGTTTGGCAGTCAACTGTAATGAAATCATTTCATTTGAGTTTTCCAAGGATTTTGTAGTTACAATGGGATGGTTTATAATCAACTCATTCAGATTTGCAGCCATTTGTGCTTGATAACACAAGTCATTTCATTTTACAGAAAAACCTAAGATGACTTCATTTCTAATTGTAGTCAACAAATCAGTATACATTTGAATGAGTTCATTACGGAACCATCATCTCATGGCTATAAATGCCTTGAGAAACTCAAGTGAAATTATTACATTGCAGGTGGCTGCCAAACGCAGCCTAAAAAACAAAATGA---AAGTTGAATACAGGCGGATGAA-GGAGTCTGGGACTACCTTATTTTTGCCAATATTTTAGACGGGT{CG}TAATTAATTTTTATGTAAAACCTTATTTAGTAGGCTTTTAAGTAAAACTTTTCTTTCTTCTT-CAATAAAATTTGGCATTTATCTCTCAAAAAAAGAGCTTTTAAGTAAAACTGCAATCTCATGGTTGGATATTCAAAACTTATGAGAAGGCATGCACCAAAGAAGT----GAGAGAGAGAGAGAGAGAGAGA------------------------------CTGAGGACTTTGAGGTTGTCTTTGTTTTGTTT-GGCTAAAAAGATGAAACTACATGCTTAAATAGGTAGTCTTCTGGTTTGAGATTTAATGTAAATTTAGATAAATTATATGCCTAACTAGGTAGTTTTCTGGTTTGAGTACTGTATAG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = LEAFY) = N: 1-956; CODONPOSSET CodonPositions (CHARACTERS = LEAFY) = N: 1-956; END; [ The following blocks are output data for analysis step 2753 ] BEGIN TREES; TITLE Tb7527; LINK TAXA = TaxaForAnalysisStep2753; TREE LEAFY = [&R] (Platanus_kerrii,((((Platanus_mexicana_var._mexicana_VE1,(Platanus_mexicana_var._mexicana_VE2,Platanus_rzedowskii),Platanus_mexicana_var._mexicana_VE4),Platanus_occidentalis_var._occidentalis_IL,Platanus_occidentalis_var._occidentalis_MO,Platanus_occidentalis_var._occidentalis_NC1,Platanus_occidentalis_var._occidentalis_NC2,Platanus_occidentalis_var._occidentalis_NC3,Platanus_occidentalis_var._occidentalis_NJ),(Platanus_mexicana_var._mexicana_CH1,Platanus_mexicana_var._mexicana_CH2)),((Platanus_orientalis_TU,Platanus_orientalis_GR1,Platanus_orientalis_GR3),((Platanus_racemosa_var._racemosa_CA1,Platanus_racemosa_var._racemosa_CA2),((Platanus_racemosa_var._wrightii_AZ1,Platanus_racemosa_var._wrightii_AZ2),Platanus_racemosa_var._wrightii_AZ3))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2297] END;